Wall clock time and date at job start Tue Mar 31 2020 12:30:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46925 * 2 1 4 4 C 1.52995 * 109.47313 * 239.99592 * 2 1 3 5 5 C 1.53004 * 109.47313 * 180.02562 * 4 2 1 6 6 C 1.52995 * 109.47028 * 59.99996 * 5 4 2 7 7 C 1.53001 * 109.47371 * 300.00115 * 6 5 4 8 8 C 1.53004 * 109.47139 * 59.99953 * 7 6 5 9 9 H 1.08998 * 109.46925 * 59.99846 * 8 7 6 10 10 C 1.52995 * 109.47313 * 180.02562 * 8 7 6 11 11 N 1.46509 * 109.46745 * 295.00194 * 10 8 7 12 12 C 1.34778 * 119.99882 * 180.02562 * 11 10 8 13 13 O 1.21285 * 119.99828 * 359.97438 * 12 11 10 14 14 C 1.50695 * 120.00139 * 180.27131 * 12 11 10 15 15 C 1.50702 * 109.47245 * 179.72302 * 14 12 11 16 16 C 1.37641 * 120.12305 * 264.73032 * 15 14 12 17 17 C 1.38620 * 120.24131 * 179.70072 * 16 15 14 18 18 C 1.38657 * 120.50242 * 0.59902 * 17 16 15 19 19 C 1.37601 * 120.24751 * 359.67672 * 18 17 16 20 20 C 1.40698 * 120.12560 * 84.99917 * 15 14 12 21 21 C 1.41387 * 120.24478 * 0.02817 * 20 15 14 22 22 H 1.08004 * 120.00033 * 334.57979 * 21 20 15 23 23 C 1.39951 * 119.99991 * 154.57919 * 21 20 15 24 24 N 1.30819 * 119.99921 * 342.83831 * 23 21 20 25 25 Si 1.86799 * 120.00121 * 162.83719 * 23 21 20 26 26 H 1.48498 * 109.47151 * 94.64590 * 25 23 21 27 27 H 1.48494 * 109.47206 * 214.65121 * 25 23 21 28 28 H 1.48507 * 109.47021 * 334.65213 * 25 23 21 29 29 H 1.09000 * 109.46875 * 299.99709 * 1 2 3 30 30 H 1.08991 * 109.46957 * 60.00521 * 1 2 3 31 31 H 1.08999 * 109.46777 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46872 * 59.99904 * 4 2 1 33 33 H 1.08998 * 109.47458 * 300.00082 * 4 2 1 34 34 H 1.08999 * 109.46777 * 299.99876 * 5 4 2 35 35 H 1.08993 * 109.47119 * 180.02562 * 5 4 2 36 36 H 1.09001 * 109.46974 * 179.97438 * 6 5 4 37 37 H 1.09007 * 109.46835 * 60.00199 * 6 5 4 38 38 H 1.08999 * 109.46978 * 300.00454 * 7 6 5 39 39 H 1.08994 * 109.47000 * 180.02562 * 7 6 5 40 40 H 1.08993 * 109.47259 * 175.00549 * 10 8 7 41 41 H 1.09000 * 109.46965 * 54.99571 * 10 8 7 42 42 H 0.96993 * 120.00349 * 359.97438 * 11 10 8 43 43 H 1.08997 * 109.47188 * 299.72588 * 14 12 11 44 44 H 1.09003 * 109.47055 * 59.72353 * 14 12 11 45 45 H 1.07995 * 119.88268 * 359.97438 * 16 15 14 46 46 H 1.07997 * 119.74938 * 180.29439 * 17 16 15 47 47 H 1.07997 * 119.87509 * 179.70125 * 18 17 16 48 48 H 1.08001 * 120.12782 * 180.02562 * 19 18 17 49 49 H 0.96996 * 120.00078 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5701 -0.7219 -1.2488 6 6 4.0795 -1.4434 0.0005 7 6 3.5695 -0.7221 1.2497 8 6 2.0395 -0.7215 1.2494 9 1 1.6758 -1.7491 1.2491 10 6 1.5295 0.0003 2.4982 11 7 1.9166 -0.7562 3.6917 12 6 1.5725 -0.3073 4.9150 13 8 0.9427 0.7231 5.0279 14 6 1.9759 -1.0821 6.1430 15 6 1.4777 -0.3686 7.3734 16 6 2.3062 0.4941 8.0546 17 6 1.8485 1.1564 9.1831 18 6 0.5579 0.9493 9.6457 19 6 -0.2858 0.0871 8.9837 20 6 0.1660 -0.5860 7.8333 21 6 -0.6918 -1.4747 7.1452 22 1 -0.5370 -1.6695 6.0942 23 6 -1.7415 -2.1019 7.8259 24 7 -1.7403 -2.1443 9.1334 25 14 -3.1443 -2.8784 6.8675 26 1 -2.8688 -4.3243 6.6710 27 1 -4.4114 -2.7143 7.6243 28 1 -3.2679 -2.2139 5.5452 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6767 -0.2075 -2.1392 33 1 1.6768 -1.7490 -1.2491 34 1 3.9337 0.3057 -1.2487 35 1 3.9334 -1.2353 -2.1389 36 1 5.1695 -1.4442 0.0004 37 1 3.7158 -2.4710 0.0002 38 1 3.9332 0.3054 1.2498 39 1 3.9329 -1.2359 2.1396 40 1 0.4433 0.0788 2.4543 41 1 1.9645 0.9987 2.5439 42 1 2.4199 -1.5804 3.6014 43 1 1.5416 -2.0809 6.1013 44 1 3.0624 -1.1597 6.1829 45 1 3.3150 0.6589 7.7062 46 1 2.5037 1.8351 9.7087 47 1 0.2134 1.4670 10.5287 48 1 -1.2908 -0.0724 9.3455 49 1 -2.4676 -2.5793 9.6052 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776855105.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:57 Heat of formation + Delta-G solvation = -75.463969 kcal Electronic energy + Delta-G solvation = -26397.628575 eV Core-core repulsion = 22900.581064 eV Total energy + Delta-G solvation = -3497.047510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.96430 -39.93719 -38.97384 -35.70297 -35.49730 -33.69694 -33.39307 -31.90300 -31.32825 -28.85919 -27.58542 -26.88728 -25.90297 -22.91789 -22.79197 -21.94270 -21.87250 -21.02777 -20.46311 -19.06776 -17.82530 -17.34978 -16.96964 -16.43872 -16.17698 -15.82512 -15.63264 -15.40406 -15.27822 -14.96232 -14.74728 -14.62752 -14.37573 -14.08880 -13.59114 -13.48277 -13.36247 -13.04338 -12.90289 -12.82271 -12.73935 -12.67735 -12.58084 -12.48408 -12.38654 -12.13348 -11.90054 -11.73760 -11.31614 -11.30721 -11.21539 -11.01159 -10.98071 -10.87224 -10.66168 -9.93882 -9.22765 -9.15279 -8.60009 -6.28410 1.00088 1.13973 1.35015 1.46689 1.53434 1.87293 2.19686 2.42358 2.78872 3.65965 3.73885 3.77498 3.82952 4.12967 4.17002 4.27308 4.36280 4.41808 4.44236 4.51404 4.57155 4.59788 4.62426 4.63542 4.71551 4.72052 4.81746 4.86819 4.90820 4.95265 5.07473 5.08487 5.14919 5.20474 5.22242 5.29453 5.34691 5.37235 5.38516 5.43923 5.48347 5.55602 5.60257 5.66635 5.78237 6.04660 6.17520 6.22075 6.42743 6.69487 6.76858 6.99828 7.12142 7.48746 8.36765 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014025 B = 0.003453 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.000595 B = 8107.877022 C = 9431.921293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 H 0.068 0.932 4 C -0.109 4.109 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.114 4.114 8 C -0.082 4.082 9 H 0.082 0.918 10 C 0.124 3.876 11 N -0.722 5.722 12 C 0.515 3.485 13 O -0.578 6.578 14 C -0.070 4.070 15 C -0.187 4.187 16 C -0.092 4.092 17 C -0.244 4.244 18 C -0.118 4.118 19 C -0.196 4.196 20 C 0.095 3.905 21 C -0.483 4.483 22 H 0.071 0.929 23 C 0.037 3.963 24 N -0.825 5.825 25 Si 0.970 3.030 26 H -0.254 1.254 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.042 0.958 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.412 0.588 43 H 0.097 0.903 44 H 0.113 0.887 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.257 -2.613 -19.577 21.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 H 0.086 0.914 4 C -0.146 4.146 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.101 4.101 9 H 0.100 0.900 10 C 0.000 4.000 11 N -0.376 5.376 12 C 0.303 3.697 13 O -0.457 6.457 14 C -0.109 4.109 15 C -0.189 4.189 16 C -0.110 4.110 17 C -0.263 4.263 18 C -0.136 4.136 19 C -0.215 4.215 20 C 0.093 3.907 21 C -0.513 4.513 22 H 0.089 0.911 23 C -0.178 4.178 24 N -0.452 5.452 25 Si 0.791 3.209 26 H -0.179 1.179 27 H -0.192 1.192 28 H -0.193 1.193 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.249 0.751 43 H 0.115 0.885 44 H 0.131 0.869 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.681 -1.976 -19.302 21.257 hybrid contribution -0.836 -0.363 0.235 0.941 sum 7.845 -2.339 -19.067 20.750 Atomic orbital electron populations 1.21935 0.95566 1.02010 1.01613 1.21062 0.95185 0.99551 0.94184 0.91399 1.21554 0.95776 1.00660 0.96635 1.21547 0.95286 1.00810 0.98070 1.21519 1.00577 0.99407 0.93865 1.21596 0.93653 1.01095 0.98791 1.21361 0.96487 0.99888 0.92317 0.90001 1.21444 0.99165 0.95139 0.84258 1.45924 1.58469 1.28300 1.04905 1.21146 0.78054 0.85114 0.85427 1.90658 1.40905 1.26781 1.87325 1.20285 1.02249 0.99160 0.89249 1.19542 0.94275 1.05195 0.99845 1.20746 0.98545 0.96194 0.95554 1.20719 0.96932 1.07330 1.01313 1.20945 0.95007 0.98526 0.99108 1.21297 0.99471 1.00512 1.00228 1.17739 0.91262 0.90241 0.91459 1.19618 1.11565 1.23293 0.96801 0.91129 1.26661 1.00304 0.95234 0.95552 1.69882 1.31322 1.34473 1.09487 0.85378 0.77371 0.79163 0.78958 1.17858 1.19236 1.19258 0.93865 0.91697 0.92476 0.91289 0.91698 0.92232 0.91113 0.91329 0.91568 0.92389 0.91494 0.93318 0.93239 0.75104 0.88523 0.86924 0.86543 0.86693 0.87695 0.88585 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.85 71.98 0.64 -2.14 16 2 C -0.08 -1.32 2.25 -10.79 -0.02 -1.35 16 3 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.11 -1.40 5.20 30.59 0.16 -1.24 16 5 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 6 C -0.12 -1.42 5.92 30.59 0.18 -1.24 16 7 C -0.11 -1.75 5.08 30.60 0.16 -1.59 16 8 C -0.08 -1.47 1.75 -10.79 -0.02 -1.48 16 9 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 10 C 0.12 3.25 4.85 86.38 0.42 3.67 16 11 N -0.72 -20.45 5.28 -463.06 -2.45 -22.90 16 12 C 0.51 20.25 7.47 87.66 0.65 20.90 16 13 O -0.58 -29.01 16.03 -3.04 -0.05 -29.06 16 14 C -0.07 -2.71 5.18 29.10 0.15 -2.56 16 15 C -0.19 -9.17 4.43 -19.40 -0.09 -9.26 16 16 C -0.09 -4.25 9.66 22.22 0.21 -4.03 16 17 C -0.24 -11.36 10.05 22.46 0.23 -11.14 16 18 C -0.12 -5.93 10.02 22.22 0.22 -5.71 16 19 C -0.20 -11.07 8.69 22.73 0.20 -10.87 16 20 C 0.10 5.34 5.57 -21.29 -0.12 5.22 16 21 C -0.48 -26.61 8.15 23.46 0.19 -26.42 16 22 H 0.07 3.79 6.66 -2.91 -0.02 3.77 16 23 C 0.04 1.92 5.15 85.26 0.44 2.36 16 24 N -0.83 -44.40 10.98 21.83 0.24 -44.16 16 25 Si 0.97 39.70 29.59 68.60 2.03 41.73 16 26 H -0.25 -9.65 7.11 99.48 0.71 -8.95 16 27 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 28 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 29 H 0.04 0.95 6.32 -2.39 -0.02 0.93 16 30 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.00 7.18 -2.39 -0.02 0.98 16 40 H 0.05 1.49 6.17 -2.39 -0.01 1.48 16 41 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.41 8.70 7.66 -92.71 -0.71 7.99 16 43 H 0.10 3.72 7.05 -2.39 -0.02 3.70 16 44 H 0.11 3.43 8.05 -2.39 -0.02 3.42 16 45 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 46 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 47 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 48 H 0.10 5.67 6.21 -2.91 -0.02 5.65 16 49 H 0.29 13.93 8.30 -92.71 -0.77 13.17 16 Total: -1.00 -69.35 382.87 3.77 -65.58 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.22 Total: 36.91 kcal Atomic # 6 Polarization: -51.88 SS G_CDS: 3.78 Total: -48.10 kcal Atomic # 7 Polarization: -64.85 SS G_CDS: -2.21 Total: -67.05 kcal Atomic # 8 Polarization: -29.01 SS G_CDS: -0.05 Total: -29.06 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Total: -69.35 3.77 -65.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776855105.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.882 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds