Wall clock time and date at job start Tue Mar 31 2020 12:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47537 * 120.00127 * 2 1 3 5 5 C 1.53003 * 109.47598 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47046 * 300.00597 * 5 4 2 7 7 C 1.52998 * 109.47409 * 59.99287 * 6 5 4 8 8 C 1.52993 * 109.47537 * 300.00349 * 7 6 5 9 9 H 1.09003 * 109.47141 * 300.00127 * 8 7 6 10 10 C 1.52998 * 109.47537 * 179.97438 * 8 7 6 11 11 N 1.46499 * 109.46973 * 64.99549 * 10 8 7 12 12 C 1.34783 * 119.99697 * 180.02562 * 11 10 8 13 13 O 1.21277 * 120.00200 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99675 * 180.02562 * 12 11 10 15 15 C 1.50700 * 109.47024 * 180.02562 * 14 12 11 16 16 C 1.37637 * 120.12950 * 264.72692 * 15 14 12 17 17 C 1.38617 * 120.24413 * 179.72234 * 16 15 14 18 18 C 1.38648 * 120.50515 * 0.55356 * 17 16 15 19 19 C 1.37602 * 120.24764 * 359.72758 * 18 17 16 20 20 C 1.40704 * 120.12570 * 85.00157 * 15 14 12 21 21 C 1.41393 * 120.24409 * 359.97438 * 20 15 14 22 22 H 1.08004 * 120.00422 * 334.08348 * 21 20 15 23 23 C 1.39950 * 120.00209 * 154.08942 * 21 20 15 24 24 N 1.30820 * 119.99334 * 343.62187 * 23 21 20 25 25 Si 1.86793 * 120.00108 * 163.62292 * 23 21 20 26 26 H 1.48504 * 109.47191 * 89.99986 * 25 23 21 27 27 H 1.48500 * 109.46927 * 209.99622 * 25 23 21 28 28 H 1.48500 * 109.47452 * 329.99897 * 25 23 21 29 29 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47517 * 299.99381 * 1 2 3 31 31 H 1.09002 * 109.47400 * 60.00030 * 1 2 3 32 32 H 1.08994 * 109.47443 * 300.00332 * 4 2 1 33 33 H 1.09004 * 109.46597 * 60.00131 * 4 2 1 34 34 H 1.09001 * 109.46577 * 59.99807 * 5 4 2 35 35 H 1.08990 * 109.47178 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47080 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.46580 * 299.99582 * 6 5 4 38 38 H 1.08997 * 109.47118 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47009 * 60.00557 * 7 6 5 40 40 H 1.09004 * 109.47000 * 304.99825 * 10 8 7 41 41 H 1.08993 * 109.47522 * 184.99927 * 10 8 7 42 42 H 0.96995 * 120.00113 * 0.02562 * 11 10 8 43 43 H 1.08994 * 109.47234 * 60.00202 * 14 12 11 44 44 H 1.09005 * 109.47341 * 299.99604 * 14 12 11 45 45 H 1.07996 * 119.87530 * 359.97102 * 16 15 14 46 46 H 1.08000 * 119.74519 * 180.25623 * 17 16 15 47 47 H 1.08001 * 119.87766 * 179.74826 * 18 17 16 48 48 H 1.08001 * 120.12452 * 180.02562 * 19 18 17 49 49 H 0.97006 * 119.99711 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2489 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7220 -1.2497 8 6 2.0395 -0.7215 -1.2493 9 1 1.6758 -1.7491 -1.2491 10 6 1.5294 0.0003 -2.4982 11 7 1.9165 -0.7560 -3.6916 12 6 1.5732 -0.3065 -4.9150 13 8 0.9442 0.7243 -5.0279 14 6 1.9709 -1.0848 -6.1427 15 6 1.4696 -0.3731 -7.3729 16 6 0.2696 -0.7365 -7.9405 17 6 -0.1965 -0.0797 -9.0687 18 6 0.5438 0.9413 -9.6448 19 6 1.7490 1.3175 -9.0976 20 6 2.2294 0.6616 -7.9489 21 6 3.4662 1.0400 -7.3776 22 1 3.6493 0.8724 -6.3265 23 6 4.4531 1.6319 -8.1741 24 7 4.3781 1.5492 -9.4775 25 14 5.8772 2.5398 -7.3760 26 1 6.9939 1.5918 -7.1316 27 1 6.3385 3.6264 -8.2769 28 1 5.4314 3.1228 -6.0850 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6767 -0.2076 2.1392 33 1 1.6767 -1.7490 1.2491 34 1 3.9337 0.3058 1.2486 35 1 3.9334 -1.2360 2.1385 36 1 5.1695 -1.4441 -0.0005 37 1 3.7158 -2.4709 -0.0003 38 1 3.9328 -1.2358 -2.1396 39 1 3.9331 0.3055 -1.2499 40 1 1.9643 0.9988 -2.5439 41 1 0.4432 0.0789 -2.4543 42 1 2.4198 -1.5802 -3.6014 43 1 1.5352 -2.0828 -6.0971 44 1 3.0572 -1.1641 -6.1866 45 1 -0.3129 -1.5337 -7.5029 46 1 -1.1412 -0.3687 -9.5051 47 1 0.1730 1.4435 -10.5261 48 1 2.3238 2.1134 -9.5478 49 1 5.0624 1.9591 -10.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776855107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:10 Heat of formation + Delta-G solvation = -59.765820 kcal Electronic energy + Delta-G solvation = -26435.998887 eV Core-core repulsion = 22939.632099 eV Total energy + Delta-G solvation = -3496.366787 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.75709 -38.70279 -37.21424 -34.45568 -33.56928 -32.89754 -31.76108 -30.86176 -29.39780 -27.44704 -26.49850 -25.30708 -24.62164 -21.98687 -21.13128 -20.87722 -20.43301 -19.92794 -19.13840 -17.13050 -16.39947 -15.79273 -15.36340 -15.11791 -15.03855 -14.65495 -14.46863 -14.27567 -14.07775 -13.68415 -13.41161 -13.20596 -12.82116 -12.70136 -12.53752 -12.22194 -11.97987 -11.92052 -11.70243 -11.64833 -11.52626 -11.19875 -11.09557 -11.06203 -10.93464 -10.91460 -10.65725 -10.60437 -10.35626 -10.22306 -10.12129 -9.42978 -9.32757 -9.11721 -9.06225 -8.58276 -7.25798 -7.23244 -6.68972 -4.28840 2.83137 3.02817 3.09330 3.14901 3.31239 3.43897 3.75921 3.97552 4.42349 4.48303 4.54125 4.71301 4.88419 4.94135 5.11588 5.20487 5.26552 5.28527 5.36068 5.49267 5.54426 5.61495 5.66114 5.78453 5.81291 5.83205 5.88585 5.91244 5.97278 6.03234 6.05822 6.10102 6.14551 6.19482 6.27509 6.33818 6.36500 6.49132 6.56352 6.85445 6.90437 7.13774 7.35053 7.47811 7.69790 7.95637 8.03900 8.13876 8.18522 8.37106 8.70314 8.95954 8.97512 9.07218 10.25372 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.003588 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.098324 B = 7802.526761 C = 9300.355807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.084 4.084 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.119 4.119 7 C -0.117 4.117 8 C -0.091 4.091 9 H 0.075 0.925 10 C 0.122 3.878 11 N -0.745 5.745 12 C 0.513 3.487 13 O -0.522 6.522 14 C -0.071 4.071 15 C -0.179 4.179 16 C -0.082 4.082 17 C -0.240 4.240 18 C -0.108 4.108 19 C -0.160 4.160 20 C 0.129 3.871 21 C -0.456 4.456 22 H 0.074 0.926 23 C 0.077 3.923 24 N -0.796 5.796 25 Si 0.901 3.099 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.065 0.935 42 H 0.394 0.606 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.085 0.915 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.057 -6.249 18.039 19.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.110 4.110 9 H 0.093 0.907 10 C -0.001 4.001 11 N -0.399 5.399 12 C 0.301 3.699 13 O -0.396 6.396 14 C -0.111 4.111 15 C -0.181 4.181 16 C -0.101 4.101 17 C -0.259 4.259 18 C -0.126 4.126 19 C -0.179 4.179 20 C 0.127 3.873 21 C -0.486 4.486 22 H 0.092 0.908 23 C -0.140 4.140 24 N -0.422 5.422 25 Si 0.726 3.274 26 H -0.196 1.196 27 H -0.201 1.201 28 H -0.186 1.186 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.083 0.917 42 H 0.227 0.773 43 H 0.093 0.907 44 H 0.113 0.887 45 H 0.102 0.898 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.134 0.866 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.395 -5.403 17.723 18.533 hybrid contribution 0.941 0.062 0.311 0.993 sum 0.546 -5.341 18.034 18.816 Atomic orbital electron populations 1.21934 0.95143 1.01916 1.02038 1.21079 0.95559 0.99730 0.93895 0.90930 1.21578 0.95447 1.00609 0.97331 1.21547 0.95723 1.00817 0.97732 1.21532 1.00183 0.99314 0.94605 1.21617 0.94691 1.01339 0.97814 1.21413 0.95747 0.99961 0.93903 0.90696 1.21368 0.99870 0.95458 0.83448 1.46153 1.59901 1.27993 1.05895 1.21205 0.78640 0.85998 0.84078 1.90675 1.38660 1.23895 1.86376 1.20267 1.02722 0.97307 0.90825 1.19055 0.98506 1.01472 0.99043 1.20300 0.95092 0.98586 0.96077 1.20299 1.00903 1.03627 1.01084 1.20668 0.95793 0.97630 0.98515 1.21287 0.95259 1.01962 0.99397 1.17332 0.91419 0.87978 0.90617 1.19462 0.97932 1.34919 0.96277 0.90817 1.25868 0.99343 0.94258 0.94523 1.69824 1.32884 1.34473 1.05008 0.86426 0.80761 0.79804 0.80435 1.19561 1.20101 1.18578 0.92712 0.92782 0.91915 0.92079 0.92035 0.92017 0.92284 0.92081 0.92090 0.91590 0.91664 0.91993 0.91650 0.77253 0.90734 0.88673 0.89800 0.89709 0.89621 0.86580 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.85 37.15 0.33 -1.01 16 2 C -0.08 -0.74 2.25 -90.62 -0.20 -0.94 16 3 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.11 -0.85 5.20 -26.73 -0.14 -0.99 16 5 C -0.12 -0.91 5.92 -26.73 -0.16 -1.07 16 6 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 7 C -0.12 -1.11 5.08 -26.74 -0.14 -1.25 16 8 C -0.09 -0.89 1.75 -90.62 -0.16 -1.05 16 9 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 10 C 0.12 1.63 4.85 -4.04 -0.02 1.61 16 11 N -0.74 -10.93 5.28 -60.30 -0.32 -11.25 16 12 C 0.51 10.17 7.46 -10.98 -0.08 10.09 16 13 O -0.52 -12.82 16.03 5.56 0.09 -12.73 16 14 C -0.07 -1.42 5.18 -29.04 -0.15 -1.57 16 15 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 16 C -0.08 -1.94 9.66 -39.66 -0.38 -2.33 16 17 C -0.24 -5.71 10.05 -39.29 -0.39 -6.11 16 18 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 19 C -0.16 -4.36 8.68 -38.87 -0.34 -4.69 16 20 C 0.13 3.51 5.56 -106.82 -0.59 2.92 16 21 C -0.46 -12.20 8.14 -37.74 -0.31 -12.50 16 22 H 0.07 1.92 6.67 -52.48 -0.35 1.57 16 23 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 24 N -0.80 -20.83 10.97 55.55 0.61 -20.22 16 25 Si 0.90 19.12 29.59 -169.99 -5.03 14.09 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.62 6.32 -51.93 -0.33 0.30 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.64 7.18 -51.93 -0.37 0.27 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 42 H 0.39 4.58 7.66 -40.82 -0.31 4.27 16 43 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 44 H 0.10 1.86 7.06 -51.93 -0.37 1.49 16 45 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 46 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 47 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 48 H 0.12 3.24 6.22 -52.49 -0.33 2.92 16 49 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -30.88 382.88 -10.99 -41.88 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.27 Total: 8.53 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -3.84 Total: -26.05 kcal Atomic # 7 Polarization: -31.76 SS G_CDS: 0.29 Total: -31.47 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.09 Total: -12.73 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.88 -10.99 -41.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776855107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.889 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds