Wall clock time and date at job start Tue Mar 31 2020 12:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47141 * 2 1 4 4 C 1.52998 * 109.47537 * 120.00127 * 2 1 3 5 5 C 1.53003 * 109.47598 * 179.97438 * 4 2 1 6 6 C 1.53002 * 109.47046 * 300.00597 * 5 4 2 7 7 C 1.52998 * 109.47409 * 59.99287 * 6 5 4 8 8 C 1.52993 * 109.47537 * 300.00349 * 7 6 5 9 9 H 1.09003 * 109.47141 * 300.00127 * 8 7 6 10 10 C 1.52998 * 109.47537 * 179.97438 * 8 7 6 11 11 N 1.46499 * 109.46973 * 64.99549 * 10 8 7 12 12 C 1.34783 * 119.99697 * 180.02562 * 11 10 8 13 13 O 1.21277 * 120.00200 * 0.02562 * 12 11 10 14 14 C 1.50698 * 119.99675 * 180.02562 * 12 11 10 15 15 C 1.50700 * 109.47024 * 180.02562 * 14 12 11 16 16 C 1.37637 * 120.12950 * 264.72692 * 15 14 12 17 17 C 1.38617 * 120.24413 * 179.72234 * 16 15 14 18 18 C 1.38648 * 120.50515 * 0.55356 * 17 16 15 19 19 C 1.37602 * 120.24764 * 359.72758 * 18 17 16 20 20 C 1.40704 * 120.12570 * 85.00157 * 15 14 12 21 21 C 1.41393 * 120.24409 * 359.97438 * 20 15 14 22 22 H 1.08004 * 120.00422 * 334.08348 * 21 20 15 23 23 C 1.39950 * 120.00209 * 154.08942 * 21 20 15 24 24 N 1.30820 * 119.99334 * 343.62187 * 23 21 20 25 25 Si 1.86793 * 120.00108 * 163.62292 * 23 21 20 26 26 H 1.48504 * 109.47191 * 89.99986 * 25 23 21 27 27 H 1.48500 * 109.46927 * 209.99622 * 25 23 21 28 28 H 1.48500 * 109.47452 * 329.99897 * 25 23 21 29 29 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47517 * 299.99381 * 1 2 3 31 31 H 1.09002 * 109.47400 * 60.00030 * 1 2 3 32 32 H 1.08994 * 109.47443 * 300.00332 * 4 2 1 33 33 H 1.09004 * 109.46597 * 60.00131 * 4 2 1 34 34 H 1.09001 * 109.46577 * 59.99807 * 5 4 2 35 35 H 1.08990 * 109.47178 * 180.02562 * 5 4 2 36 36 H 1.09000 * 109.47080 * 180.02562 * 6 5 4 37 37 H 1.09003 * 109.46580 * 299.99582 * 6 5 4 38 38 H 1.08997 * 109.47118 * 179.97438 * 7 6 5 39 39 H 1.09003 * 109.47009 * 60.00557 * 7 6 5 40 40 H 1.09004 * 109.47000 * 304.99825 * 10 8 7 41 41 H 1.08993 * 109.47522 * 184.99927 * 10 8 7 42 42 H 0.96995 * 120.00113 * 0.02562 * 11 10 8 43 43 H 1.08994 * 109.47234 * 60.00202 * 14 12 11 44 44 H 1.09005 * 109.47341 * 299.99604 * 14 12 11 45 45 H 1.07996 * 119.87530 * 359.97102 * 16 15 14 46 46 H 1.08000 * 119.74519 * 180.25623 * 17 16 15 47 47 H 1.08001 * 119.87766 * 179.74826 * 18 17 16 48 48 H 1.08001 * 120.12452 * 180.02562 * 19 18 17 49 49 H 0.97006 * 119.99711 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7218 1.2489 6 6 4.0795 -1.4433 -0.0005 7 6 3.5694 -0.7220 -1.2497 8 6 2.0395 -0.7215 -1.2493 9 1 1.6758 -1.7491 -1.2491 10 6 1.5294 0.0003 -2.4982 11 7 1.9165 -0.7560 -3.6916 12 6 1.5732 -0.3065 -4.9150 13 8 0.9442 0.7243 -5.0279 14 6 1.9709 -1.0848 -6.1427 15 6 1.4696 -0.3731 -7.3729 16 6 0.2696 -0.7365 -7.9405 17 6 -0.1965 -0.0797 -9.0687 18 6 0.5438 0.9413 -9.6448 19 6 1.7490 1.3175 -9.0976 20 6 2.2294 0.6616 -7.9489 21 6 3.4662 1.0400 -7.3776 22 1 3.6493 0.8724 -6.3265 23 6 4.4531 1.6319 -8.1741 24 7 4.3781 1.5492 -9.4775 25 14 5.8772 2.5398 -7.3760 26 1 6.9939 1.5918 -7.1316 27 1 6.3385 3.6264 -8.2769 28 1 5.4314 3.1228 -6.0850 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6767 -0.2076 2.1392 33 1 1.6767 -1.7490 1.2491 34 1 3.9337 0.3058 1.2486 35 1 3.9334 -1.2360 2.1385 36 1 5.1695 -1.4441 -0.0005 37 1 3.7158 -2.4709 -0.0003 38 1 3.9328 -1.2358 -2.1396 39 1 3.9331 0.3055 -1.2499 40 1 1.9643 0.9988 -2.5439 41 1 0.4432 0.0789 -2.4543 42 1 2.4198 -1.5802 -3.6014 43 1 1.5352 -2.0828 -6.0971 44 1 3.0572 -1.1641 -6.1866 45 1 -0.3129 -1.5337 -7.5029 46 1 -1.1412 -0.3687 -9.5051 47 1 0.1730 1.4435 -10.5261 48 1 2.3238 2.1134 -9.5478 49 1 5.0624 1.9591 -10.0296 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776855107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:09 Heat of formation + Delta-G solvation = -75.513721 kcal Electronic energy + Delta-G solvation = -26436.681767 eV Core-core repulsion = 22939.632099 eV Total energy + Delta-G solvation = -3497.049668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.96664 -39.93986 -38.97580 -35.70601 -35.49393 -33.69994 -33.39302 -31.90632 -31.32642 -28.86059 -27.57860 -26.88645 -25.90626 -22.92531 -22.78558 -21.94576 -21.87534 -21.03370 -20.46306 -19.06494 -17.83031 -17.35461 -16.95275 -16.45423 -16.17405 -15.83325 -15.63498 -15.40663 -15.27178 -14.96991 -14.72160 -14.66815 -14.36856 -14.06758 -13.64171 -13.44496 -13.36232 -13.03071 -12.90790 -12.82110 -12.75193 -12.67704 -12.57914 -12.48320 -12.38448 -12.13579 -11.90691 -11.73919 -11.31709 -11.31236 -11.21475 -11.01992 -10.98626 -10.87591 -10.66343 -9.93958 -9.22227 -9.15172 -8.59497 -6.28799 1.00101 1.13940 1.34648 1.45970 1.53125 1.87094 2.19515 2.42432 2.79207 3.65856 3.73676 3.77188 3.82397 4.13023 4.16747 4.26868 4.36320 4.40737 4.45303 4.50663 4.56857 4.59550 4.61890 4.63544 4.71609 4.72718 4.81734 4.87115 4.90380 4.96080 5.06947 5.08527 5.14386 5.20442 5.22272 5.28968 5.34131 5.37275 5.38417 5.44297 5.48042 5.55521 5.60042 5.66403 5.78303 6.04568 6.17489 6.21936 6.42779 6.69450 6.76857 6.99880 7.12056 7.48664 8.37212 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013529 B = 0.003588 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2069.098324 B = 7802.526761 C = 9300.355807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.083 4.083 3 H 0.061 0.939 4 C -0.107 4.107 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.118 4.118 8 C -0.079 4.079 9 H 0.090 0.910 10 C 0.123 3.877 11 N -0.722 5.722 12 C 0.515 3.485 13 O -0.578 6.578 14 C -0.070 4.070 15 C -0.186 4.186 16 C -0.093 4.093 17 C -0.243 4.243 18 C -0.118 4.118 19 C -0.195 4.195 20 C 0.096 3.904 21 C -0.483 4.483 22 H 0.070 0.930 23 C 0.037 3.963 24 N -0.826 5.826 25 Si 0.970 3.030 26 H -0.254 1.254 27 H -0.268 1.268 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.038 0.962 41 H 0.059 0.941 42 H 0.412 0.588 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.115 0.885 47 H 0.105 0.895 48 H 0.096 0.904 49 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.199 -8.159 20.110 21.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.102 4.102 3 H 0.080 0.920 4 C -0.145 4.145 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.156 4.156 8 C -0.098 4.098 9 H 0.108 0.892 10 C 0.000 4.000 11 N -0.376 5.376 12 C 0.303 3.697 13 O -0.457 6.457 14 C -0.110 4.110 15 C -0.188 4.188 16 C -0.111 4.111 17 C -0.262 4.262 18 C -0.136 4.136 19 C -0.214 4.214 20 C 0.093 3.907 21 C -0.513 4.513 22 H 0.088 0.912 23 C -0.177 4.177 24 N -0.453 5.453 25 Si 0.791 3.209 26 H -0.178 1.178 27 H -0.192 1.192 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.057 0.943 41 H 0.077 0.923 42 H 0.249 0.751 43 H 0.131 0.869 44 H 0.115 0.885 45 H 0.135 0.865 46 H 0.133 0.867 47 H 0.123 0.877 48 H 0.114 0.886 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.119 -7.367 19.820 21.145 hybrid contribution 0.764 0.611 -0.335 1.034 sum 0.645 -6.756 19.485 20.633 Atomic orbital electron populations 1.21915 0.95014 1.02298 1.01652 1.21074 0.95644 0.99292 0.94181 0.92030 1.21546 0.95416 1.00891 0.96613 1.21557 0.95672 1.00574 0.98029 1.21509 1.00400 0.99579 0.93758 1.21621 0.94356 1.00755 0.98842 1.21346 0.95909 1.00208 0.92307 0.89187 1.21451 0.99492 0.94809 0.84277 1.45923 1.58490 1.28281 1.04904 1.21147 0.78059 0.85160 0.85376 1.90656 1.41547 1.26204 1.87262 1.20287 1.02914 0.98584 0.89169 1.19552 0.98482 1.00627 1.00150 1.20751 0.95061 0.99294 0.95980 1.20721 1.01751 1.02745 1.00976 1.20947 0.95253 0.98202 0.99218 1.21303 0.96605 1.02735 1.00802 1.17735 0.92426 0.89225 0.91274 1.19608 0.98660 1.36783 0.96253 0.91187 1.26649 1.01721 0.94462 0.94896 1.69883 1.34056 1.35129 1.06219 0.85391 0.77783 0.78791 0.78910 1.17778 1.19196 1.19432 0.91901 0.91811 0.93699 0.91268 0.91191 0.92702 0.90975 0.91770 0.91052 0.91777 0.93163 0.94329 0.92284 0.75092 0.86893 0.88529 0.86497 0.86661 0.87685 0.88584 0.90369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.85 71.98 0.64 -1.81 16 2 C -0.08 -1.34 2.25 -10.79 -0.02 -1.37 16 3 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.11 -1.35 5.20 30.59 0.16 -1.19 16 5 C -0.12 -1.53 5.92 30.60 0.18 -1.35 16 6 C -0.12 -1.56 5.92 30.59 0.18 -1.38 16 7 C -0.12 -2.07 5.08 30.59 0.16 -1.92 16 8 C -0.08 -1.41 1.75 -10.79 -0.02 -1.43 16 9 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 10 C 0.12 3.24 4.85 86.38 0.42 3.66 16 11 N -0.72 -20.45 5.28 -463.07 -2.45 -22.90 16 12 C 0.51 20.25 7.46 87.66 0.65 20.90 16 13 O -0.58 -29.02 16.03 -3.02 -0.05 -29.07 16 14 C -0.07 -2.72 5.18 29.10 0.15 -2.56 16 15 C -0.19 -9.15 4.43 -19.40 -0.09 -9.23 16 16 C -0.09 -4.26 9.66 22.22 0.21 -4.05 16 17 C -0.24 -11.30 10.05 22.46 0.23 -11.07 16 18 C -0.12 -5.95 10.02 22.22 0.22 -5.72 16 19 C -0.19 -11.04 8.68 22.73 0.20 -10.84 16 20 C 0.10 5.36 5.56 -21.29 -0.12 5.24 16 21 C -0.48 -26.66 8.14 23.46 0.19 -26.47 16 22 H 0.07 3.77 6.67 -2.91 -0.02 3.75 16 23 C 0.04 1.93 5.16 85.26 0.44 2.37 16 24 N -0.83 -44.53 10.97 21.83 0.24 -44.30 16 25 Si 0.97 39.83 29.59 68.60 2.03 41.86 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 27 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 28 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 29 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.04 0.88 6.32 -2.39 -0.02 0.86 16 32 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.06 1.13 7.18 -2.39 -0.02 1.12 16 39 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.06 1.66 6.17 -2.39 -0.01 1.65 16 42 H 0.41 8.69 7.66 -92.71 -0.71 7.98 16 43 H 0.11 3.44 8.05 -2.39 -0.02 3.42 16 44 H 0.10 3.72 7.06 -2.38 -0.02 3.70 16 45 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 46 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 47 H 0.11 4.71 8.06 -2.91 -0.02 4.68 16 48 H 0.10 5.68 6.22 -2.91 -0.02 5.66 16 49 H 0.29 13.96 8.30 -92.70 -0.77 13.20 16 Total: -1.00 -69.55 382.88 3.77 -65.78 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: 0.22 Total: 36.83 kcal Atomic # 6 Polarization: -51.99 SS G_CDS: 3.78 Total: -48.21 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: -2.21 Total: -67.19 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -0.05 Total: -29.07 kcal Atomic # 14 Polarization: 39.83 SS G_CDS: 2.03 Total: 41.86 kcal Total: -69.55 3.77 -65.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776855107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.738 kcal (2) G-P(sol) polarization free energy of solvation -69.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds