Wall clock time and date at job start Tue Mar 31 2020 11:18:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 C 1.52995 * 109.46752 * 2 1
4 4 H 1.09004 * 108.45015 * 57.30884 * 3 2 1
5 5 C 1.52573 * 108.50966 * 174.99632 * 3 2 1
6 6 C 1.50881 * 109.35667 * 206.26770 * 5 3 2
7 7 C 1.53913 * 110.08476 * 268.10876 * 6 5 3
8 8 N 1.47604 * 112.16028 * 40.58828 * 7 6 5
9 9 C 1.34780 * 118.64326 * 222.12062 * 8 7 6
10 10 O 1.21276 * 119.99880 * 179.97438 * 9 8 7
11 11 C 1.50704 * 120.00042 * 359.97438 * 9 8 7
12 12 C 1.50693 * 109.46830 * 179.97438 * 11 9 8
13 13 C 1.37642 * 120.12805 * 264.99669 * 12 11 9
14 14 C 1.38610 * 120.24613 * 180.02562 * 13 12 11
15 15 C 1.38654 * 120.50547 * 359.97438 * 14 13 12
16 16 C 1.37599 * 120.24593 * 0.02562 * 15 14 13
17 17 C 1.40702 * 120.12824 * 84.72611 * 12 11 9
18 18 C 1.41397 * 120.24051 * 359.97438 * 17 12 11
19 19 H 1.07996 * 120.00312 * 333.88627 * 18 17 12
20 20 C 1.39951 * 119.99711 * 153.89973 * 18 17 12
21 21 N 1.30817 * 120.00132 * 343.70558 * 20 18 17
22 22 Si 1.86798 * 119.99930 * 163.71433 * 20 18 17
23 23 H 1.48496 * 109.47123 * 59.99353 * 22 20 18
24 24 H 1.48496 * 109.47256 * 179.97438 * 22 20 18
25 25 H 1.48500 * 109.46877 * 299.99551 * 22 20 18
26 26 C 1.44579 * 122.71211 * 42.09842 * 8 7 6
27 27 C 1.47090 * 108.51539 * 299.76253 * 3 2 1
28 28 H 1.09001 * 109.46515 * 179.97438 * 1 2 3
29 29 H 1.09000 * 109.47618 * 299.99697 * 1 2 3
30 30 H 1.08995 * 109.46956 * 60.00511 * 1 2 3
31 31 H 1.08993 * 109.47107 * 239.99881 * 2 1 3
32 32 H 1.09007 * 109.46772 * 119.99877 * 2 1 3
33 33 H 1.08996 * 109.49281 * 326.23048 * 5 3 2
34 34 H 1.09000 * 109.48710 * 86.30858 * 5 3 2
35 35 H 1.08999 * 109.37010 * 28.30741 * 6 5 3
36 36 H 1.09007 * 109.36791 * 147.92524 * 6 5 3
37 37 H 1.09004 * 108.94838 * 279.89252 * 7 6 5
38 38 H 1.09004 * 108.86451 * 161.22711 * 7 6 5
39 39 H 1.08997 * 109.46913 * 299.99840 * 11 9 8
40 40 H 1.09002 * 109.47175 * 59.99493 * 11 9 8
41 41 H 1.07994 * 119.87214 * 0.02562 * 13 12 11
42 42 H 1.08003 * 119.74853 * 179.97438 * 14 13 12
43 43 H 1.08004 * 119.88035 * 179.97438 * 15 14 13
44 44 H 1.08008 * 120.12618 * 179.97438 * 16 15 14
45 45 H 0.96998 * 120.00678 * 180.02562 * 21 20 18
46 46 H 1.09007 * 109.44662 * 149.25874 * 26 8 7
47 47 H 1.08993 * 109.44976 * 29.34175 * 26 8 7
48 48 H 1.08996 * 109.33058 * 296.20412 * 27 3 2
49 49 H 1.09003 * 109.32721 * 55.85724 * 27 3 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6284 1.9539 0.8702
5 6 3.5603 1.4188 0.1262
6 6 4.0296 2.7052 0.7598
7 6 4.3571 3.7422 -0.3294
8 7 3.3732 3.7237 -1.4296
9 6 3.8201 3.8184 -2.6976
10 8 3.0333 3.8052 -3.6204
11 6 5.2975 3.9406 -2.9687
12 6 5.5297 4.0294 -4.4550
13 6 5.8258 2.8956 -5.1770
14 6 6.0403 2.9746 -6.5441
15 6 5.9592 4.1934 -7.2001
16 6 5.6646 5.3399 -6.4984
17 6 5.4392 5.2709 -5.1110
18 6 5.1295 6.4413 -4.3806
19 1 4.5656 6.3715 -3.4623
20 6 5.5537 7.6905 -4.8480
21 7 6.4878 7.7646 -5.7608
22 14 4.7861 9.2519 -4.1681
23 1 5.0172 9.3196 -2.7028
24 1 5.4052 10.4329 -4.8216
25 1 3.3261 9.2443 -4.4392
26 6 1.9500 3.6077 -1.2031
27 6 1.5428 2.1136 -1.2108
28 1 -0.3632 -1.0277 -0.0005
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 0.5137 -0.8900
31 1 1.8934 -0.5138 -0.8899
32 1 1.8933 -0.5139 0.8901
33 1 3.8605 0.5761 0.7489
34 1 4.0057 1.3172 -0.8634
35 1 3.2450 3.0965 1.4074
36 1 4.9225 2.5108 1.3540
37 1 5.3460 3.5288 -0.7353
38 1 4.3663 4.7350 0.1205
39 1 5.6824 4.8390 -2.4862
40 1 5.8133 3.0659 -2.5723
41 1 5.8911 1.9409 -4.6764
42 1 6.2725 2.0798 -7.1027
43 1 6.1286 4.2434 -8.2656
44 1 5.6022 6.2884 -7.0113
45 1 6.7821 8.6303 -6.0845
46 1 1.4129 4.1344 -1.9921
47 1 1.6991 4.0474 -0.2379
48 1 1.9652 1.6291 -2.0911
49 1 0.4559 2.0387 -1.2443
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000776932833.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:18:59
Heat of formation + Delta-G solvation = -37.842815 kcal
Electronic energy + Delta-G solvation = -27283.866127 eV
Core-core repulsion = 23788.449992 eV
Total energy + Delta-G solvation = -3495.416135 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.14407 -38.17696 -37.08823 -35.00809 -33.57121 -32.69742 -31.84885 -30.57578
-29.39494 -27.46324 -26.38554 -25.17015 -24.67808 -22.77173 -21.31129 -20.87578
-20.19815 -19.76155 -18.15247 -17.09602 -16.59019 -16.06357 -15.55554 -15.29428
-14.81799 -14.68912 -14.37463 -14.12430 -13.69204 -13.49955 -13.38445 -13.25572
-12.82269 -12.59841 -12.52964 -12.30094 -12.13987 -11.73359 -11.62591 -11.51017
-11.21540 -11.12397 -11.10176 -11.02739 -10.92286 -10.84794 -10.63366 -10.50861
-10.40623 -10.35763 -10.25730 -9.42972 -9.30591 -9.11133 -9.01496 -8.21815
-7.25604 -7.23190 -6.68532 -4.29028 2.84530 3.02602 3.08792 3.12508
3.32218 3.38706 3.52107 3.97516 4.50541 4.67232 4.70217 4.73312
4.95345 5.05959 5.12768 5.21973 5.30521 5.36704 5.53170 5.58468
5.60770 5.62894 5.75749 5.82649 5.83332 5.88833 5.92473 5.94871
6.01542 6.03474 6.08318 6.18212 6.22807 6.27331 6.32575 6.34973
6.46269 6.49046 6.56115 6.84809 7.07856 7.13883 7.35002 7.47828
7.68690 7.84381 7.98870 8.12888 8.18329 8.37170 8.70177 8.93085
8.97338 9.07269 10.25636
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.014861 B = 0.004050 C = 0.003549
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1883.653338 B = 6911.449618 C = 7887.312971
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.122 4.122
3 C -0.082 4.082
4 H 0.062 0.938
5 C -0.111 4.111
6 C -0.130 4.130
7 C 0.108 3.892
8 N -0.619 5.619
9 C 0.513 3.487
10 O -0.519 6.519
11 C -0.070 4.070
12 C -0.179 4.179
13 C -0.082 4.082
14 C -0.239 4.239
15 C -0.108 4.108
16 C -0.160 4.160
17 C 0.130 3.870
18 C -0.456 4.456
19 H 0.073 0.927
20 C 0.077 3.923
21 N -0.797 5.797
22 Si 0.902 3.098
23 H -0.266 1.266
24 H -0.279 1.279
25 H -0.264 1.264
26 C 0.120 3.880
27 C -0.132 4.132
28 H 0.050 0.950
29 H 0.052 0.948
30 H 0.059 0.941
31 H 0.060 0.940
32 H 0.058 0.942
33 H 0.060 0.940
34 H 0.067 0.933
35 H 0.064 0.936
36 H 0.073 0.927
37 H 0.085 0.915
38 H 0.060 0.940
39 H 0.094 0.906
40 H 0.073 0.927
41 H 0.083 0.917
42 H 0.084 0.916
43 H 0.085 0.915
44 H 0.117 0.883
45 H 0.279 0.721
46 H 0.080 0.920
47 H 0.065 0.935
48 H 0.066 0.934
49 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.531 -8.672 14.108 17.459
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.213 4.213
2 C -0.160 4.160
3 C -0.101 4.101
4 H 0.081 0.919
5 C -0.149 4.149
6 C -0.169 4.169
7 C -0.015 4.015
8 N -0.354 5.354
9 C 0.302 3.698
10 O -0.393 6.393
11 C -0.110 4.110
12 C -0.181 4.181
13 C -0.100 4.100
14 C -0.259 4.259
15 C -0.126 4.126
16 C -0.179 4.179
17 C 0.127 3.873
18 C -0.486 4.486
19 H 0.091 0.909
20 C -0.140 4.140
21 N -0.422 5.422
22 Si 0.727 3.273
23 H -0.191 1.191
24 H -0.204 1.204
25 H -0.189 1.189
26 C -0.004 4.004
27 C -0.171 4.171
28 H 0.069 0.931
29 H 0.071 0.929
30 H 0.078 0.922
31 H 0.079 0.921
32 H 0.076 0.924
33 H 0.079 0.921
34 H 0.086 0.914
35 H 0.082 0.918
36 H 0.092 0.908
37 H 0.103 0.897
38 H 0.079 0.921
39 H 0.112 0.888
40 H 0.092 0.908
41 H 0.101 0.899
42 H 0.103 0.897
43 H 0.104 0.896
44 H 0.134 0.866
45 H 0.090 0.910
46 H 0.099 0.901
47 H 0.084 0.916
48 H 0.085 0.915
49 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -5.821 -8.483 13.481 16.958
hybrid contribution -0.286 0.727 0.353 0.857
sum -6.107 -7.757 13.834 16.995
Atomic orbital electron populations
1.21878 0.96145 1.01318 1.01960 1.21705 0.95775 0.96814 1.01699
1.20109 0.95423 0.95754 0.98780 0.91929 1.21123 0.95283 0.96973
1.01499 1.21754 1.01784 0.95677 0.97642 1.21932 0.92680 0.98748
0.88150 1.47808 1.06124 1.75094 1.06408 1.21246 0.92178 0.74916
0.81451 1.90666 1.57736 1.47755 1.43097 1.20313 0.91256 1.02305
0.97105 1.19090 1.12655 0.94492 0.91887 1.20281 1.00136 0.95586
0.94005 1.20293 1.14823 0.96280 0.94473 1.20668 1.01031 0.93541
0.97387 1.21295 1.05360 0.96955 0.94267 1.17320 0.87325 0.91144
0.91491 1.19434 1.30774 0.90390 1.08024 0.90891 1.25862 0.93147
1.00911 0.94047 1.69808 1.21072 1.27183 1.24162 0.86464 0.80639
0.80329 0.79861 1.19114 1.20360 1.18910 1.21271 0.81963 0.95737
1.01432 1.21339 1.00913 0.96493 0.98356 0.93120 0.92931 0.92174
0.92110 0.92352 0.92080 0.91443 0.91764 0.90845 0.89671 0.92132
0.88766 0.90847 0.89906 0.89744 0.89638 0.86555 0.90964 0.90122
0.91638 0.91511 0.91023
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.32 9.52 37.16 0.35 -0.96 16
2 C -0.12 -1.12 5.25 -26.73 -0.14 -1.26 16
3 C -0.08 -0.82 1.71 -93.68 -0.16 -0.98 16
4 H 0.06 0.59 7.35 -51.93 -0.38 0.21 16
5 C -0.11 -1.11 4.93 -28.01 -0.14 -1.25 16
6 C -0.13 -1.20 5.71 -27.32 -0.16 -1.35 16
7 C 0.11 1.27 5.95 -2.96 -0.02 1.25 16
8 N -0.62 -9.44 2.24 -172.56 -0.39 -9.82 16
9 C 0.51 10.21 7.23 -10.98 -0.08 10.13 16
10 O -0.52 -12.59 15.47 5.56 0.09 -12.51 16
11 C -0.07 -1.40 3.51 -29.04 -0.10 -1.51 16
12 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16
13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16
14 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16
15 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16
16 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16
17 C 0.13 3.52 5.56 -106.82 -0.59 2.92 16
18 C -0.46 -12.20 8.14 -37.74 -0.31 -12.51 16
19 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16
20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16
21 N -0.80 -20.82 10.96 55.55 0.61 -20.21 16
22 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16
23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16
24 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16
25 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16
26 C 0.12 1.65 5.38 -4.09 -0.02 1.63 16
27 C -0.13 -1.61 4.74 -28.59 -0.14 -1.75 16
28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16
29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16
30 H 0.06 0.54 6.27 -51.93 -0.33 0.21 16
31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
32 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16
33 H 0.06 0.54 7.72 -51.93 -0.40 0.14 16
34 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16
35 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16
36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
37 H 0.08 0.99 5.82 -51.93 -0.30 0.69 16
38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
39 H 0.09 1.87 6.97 -51.93 -0.36 1.51 16
40 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16
41 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16
42 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16
43 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16
44 H 0.12 3.25 6.21 -52.48 -0.33 2.92 16
45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16
46 H 0.08 1.31 7.30 -51.93 -0.38 0.93 16
47 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16
48 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16
49 H 0.07 0.79 5.98 -51.93 -0.31 0.48 16
LS Contribution 374.96 15.07 5.65 5.65
Total: -1.00 -30.43 374.96 -10.69 -41.12
By element:
Atomic # 1 Polarization: 14.45 SS G_CDS: -8.06 Total: 6.40 kcal
Atomic # 6 Polarization: -21.18 SS G_CDS: -3.56 Total: -24.75 kcal
Atomic # 7 Polarization: -30.26 SS G_CDS: 0.22 Total: -30.04 kcal
Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.51 kcal
Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal
Total LS contribution 5.65 Total: 5.65 kcal
Total: -30.43 -10.69 -41.12 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000776932833.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 3.278 kcal
(2) G-P(sol) polarization free energy of solvation -30.430 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.152 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.843 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds