Wall clock time and date at job start Tue Mar 31 2020 11:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46752 * 2 1 4 4 H 1.09004 * 108.45015 * 57.30884 * 3 2 1 5 5 C 1.52573 * 108.50966 * 174.99632 * 3 2 1 6 6 C 1.50881 * 109.35667 * 206.26770 * 5 3 2 7 7 C 1.53913 * 110.08476 * 268.10876 * 6 5 3 8 8 N 1.47604 * 112.16028 * 40.58828 * 7 6 5 9 9 C 1.34780 * 118.64326 * 222.12062 * 8 7 6 10 10 O 1.21276 * 119.99880 * 179.97438 * 9 8 7 11 11 C 1.50704 * 120.00042 * 359.97438 * 9 8 7 12 12 C 1.50693 * 109.46830 * 179.97438 * 11 9 8 13 13 C 1.37642 * 120.12805 * 264.99669 * 12 11 9 14 14 C 1.38610 * 120.24613 * 180.02562 * 13 12 11 15 15 C 1.38654 * 120.50547 * 359.97438 * 14 13 12 16 16 C 1.37599 * 120.24593 * 0.02562 * 15 14 13 17 17 C 1.40702 * 120.12824 * 84.72611 * 12 11 9 18 18 C 1.41397 * 120.24051 * 359.97438 * 17 12 11 19 19 H 1.07996 * 120.00312 * 333.88627 * 18 17 12 20 20 C 1.39951 * 119.99711 * 153.89973 * 18 17 12 21 21 N 1.30817 * 120.00132 * 343.70558 * 20 18 17 22 22 Si 1.86798 * 119.99930 * 163.71433 * 20 18 17 23 23 H 1.48496 * 109.47123 * 59.99353 * 22 20 18 24 24 H 1.48496 * 109.47256 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46877 * 299.99551 * 22 20 18 26 26 C 1.44579 * 122.71211 * 42.09842 * 8 7 6 27 27 C 1.47090 * 108.51539 * 299.76253 * 3 2 1 28 28 H 1.09001 * 109.46515 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47618 * 299.99697 * 1 2 3 30 30 H 1.08995 * 109.46956 * 60.00511 * 1 2 3 31 31 H 1.08993 * 109.47107 * 239.99881 * 2 1 3 32 32 H 1.09007 * 109.46772 * 119.99877 * 2 1 3 33 33 H 1.08996 * 109.49281 * 326.23048 * 5 3 2 34 34 H 1.09000 * 109.48710 * 86.30858 * 5 3 2 35 35 H 1.08999 * 109.37010 * 28.30741 * 6 5 3 36 36 H 1.09007 * 109.36791 * 147.92524 * 6 5 3 37 37 H 1.09004 * 108.94838 * 279.89252 * 7 6 5 38 38 H 1.09004 * 108.86451 * 161.22711 * 7 6 5 39 39 H 1.08997 * 109.46913 * 299.99840 * 11 9 8 40 40 H 1.09002 * 109.47175 * 59.99493 * 11 9 8 41 41 H 1.07994 * 119.87214 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.74853 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.88035 * 179.97438 * 15 14 13 44 44 H 1.08008 * 120.12618 * 179.97438 * 16 15 14 45 45 H 0.96998 * 120.00678 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.44662 * 149.25874 * 26 8 7 47 47 H 1.08993 * 109.44976 * 29.34175 * 26 8 7 48 48 H 1.08996 * 109.33058 * 296.20412 * 27 3 2 49 49 H 1.09003 * 109.32721 * 55.85724 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6284 1.9539 0.8702 5 6 3.5603 1.4188 0.1262 6 6 4.0296 2.7052 0.7598 7 6 4.3571 3.7422 -0.3294 8 7 3.3732 3.7237 -1.4296 9 6 3.8201 3.8184 -2.6976 10 8 3.0333 3.8052 -3.6204 11 6 5.2975 3.9406 -2.9687 12 6 5.5297 4.0294 -4.4550 13 6 5.8258 2.8956 -5.1770 14 6 6.0403 2.9746 -6.5441 15 6 5.9592 4.1934 -7.2001 16 6 5.6646 5.3399 -6.4984 17 6 5.4392 5.2709 -5.1110 18 6 5.1295 6.4413 -4.3806 19 1 4.5656 6.3715 -3.4623 20 6 5.5537 7.6905 -4.8480 21 7 6.4878 7.7646 -5.7608 22 14 4.7861 9.2519 -4.1681 23 1 5.0172 9.3196 -2.7028 24 1 5.4052 10.4329 -4.8216 25 1 3.3261 9.2443 -4.4392 26 6 1.9500 3.6077 -1.2031 27 6 1.5428 2.1136 -1.2108 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.8605 0.5761 0.7489 34 1 4.0057 1.3172 -0.8634 35 1 3.2450 3.0965 1.4074 36 1 4.9225 2.5108 1.3540 37 1 5.3460 3.5288 -0.7353 38 1 4.3663 4.7350 0.1205 39 1 5.6824 4.8390 -2.4862 40 1 5.8133 3.0659 -2.5723 41 1 5.8911 1.9409 -4.6764 42 1 6.2725 2.0798 -7.1027 43 1 6.1286 4.2434 -8.2656 44 1 5.6022 6.2884 -7.0113 45 1 6.7821 8.6303 -6.0845 46 1 1.4129 4.1344 -1.9921 47 1 1.6991 4.0474 -0.2379 48 1 1.9652 1.6291 -2.0911 49 1 0.4559 2.0387 -1.2443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776932833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:59 Heat of formation + Delta-G solvation = -37.842815 kcal Electronic energy + Delta-G solvation = -27283.866127 eV Core-core repulsion = 23788.449992 eV Total energy + Delta-G solvation = -3495.416135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.14407 -38.17696 -37.08823 -35.00809 -33.57121 -32.69742 -31.84885 -30.57578 -29.39494 -27.46324 -26.38554 -25.17015 -24.67808 -22.77173 -21.31129 -20.87578 -20.19815 -19.76155 -18.15247 -17.09602 -16.59019 -16.06357 -15.55554 -15.29428 -14.81799 -14.68912 -14.37463 -14.12430 -13.69204 -13.49955 -13.38445 -13.25572 -12.82269 -12.59841 -12.52964 -12.30094 -12.13987 -11.73359 -11.62591 -11.51017 -11.21540 -11.12397 -11.10176 -11.02739 -10.92286 -10.84794 -10.63366 -10.50861 -10.40623 -10.35763 -10.25730 -9.42972 -9.30591 -9.11133 -9.01496 -8.21815 -7.25604 -7.23190 -6.68532 -4.29028 2.84530 3.02602 3.08792 3.12508 3.32218 3.38706 3.52107 3.97516 4.50541 4.67232 4.70217 4.73312 4.95345 5.05959 5.12768 5.21973 5.30521 5.36704 5.53170 5.58468 5.60770 5.62894 5.75749 5.82649 5.83332 5.88833 5.92473 5.94871 6.01542 6.03474 6.08318 6.18212 6.22807 6.27331 6.32575 6.34973 6.46269 6.49046 6.56115 6.84809 7.07856 7.13883 7.35002 7.47828 7.68690 7.84381 7.98870 8.12888 8.18329 8.37170 8.70177 8.93085 8.97338 9.07269 10.25636 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.004050 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.653338 B = 6911.449618 C = 7887.312971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.082 4.082 4 H 0.062 0.938 5 C -0.111 4.111 6 C -0.130 4.130 7 C 0.108 3.892 8 N -0.619 5.619 9 C 0.513 3.487 10 O -0.519 6.519 11 C -0.070 4.070 12 C -0.179 4.179 13 C -0.082 4.082 14 C -0.239 4.239 15 C -0.108 4.108 16 C -0.160 4.160 17 C 0.130 3.870 18 C -0.456 4.456 19 H 0.073 0.927 20 C 0.077 3.923 21 N -0.797 5.797 22 Si 0.902 3.098 23 H -0.266 1.266 24 H -0.279 1.279 25 H -0.264 1.264 26 C 0.120 3.880 27 C -0.132 4.132 28 H 0.050 0.950 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.279 0.721 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.066 0.934 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.531 -8.672 14.108 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.101 4.101 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.169 4.169 7 C -0.015 4.015 8 N -0.354 5.354 9 C 0.302 3.698 10 O -0.393 6.393 11 C -0.110 4.110 12 C -0.181 4.181 13 C -0.100 4.100 14 C -0.259 4.259 15 C -0.126 4.126 16 C -0.179 4.179 17 C 0.127 3.873 18 C -0.486 4.486 19 H 0.091 0.909 20 C -0.140 4.140 21 N -0.422 5.422 22 Si 0.727 3.273 23 H -0.191 1.191 24 H -0.204 1.204 25 H -0.189 1.189 26 C -0.004 4.004 27 C -0.171 4.171 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.134 0.866 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.821 -8.483 13.481 16.958 hybrid contribution -0.286 0.727 0.353 0.857 sum -6.107 -7.757 13.834 16.995 Atomic orbital electron populations 1.21878 0.96145 1.01318 1.01960 1.21705 0.95775 0.96814 1.01699 1.20109 0.95423 0.95754 0.98780 0.91929 1.21123 0.95283 0.96973 1.01499 1.21754 1.01784 0.95677 0.97642 1.21932 0.92680 0.98748 0.88150 1.47808 1.06124 1.75094 1.06408 1.21246 0.92178 0.74916 0.81451 1.90666 1.57736 1.47755 1.43097 1.20313 0.91256 1.02305 0.97105 1.19090 1.12655 0.94492 0.91887 1.20281 1.00136 0.95586 0.94005 1.20293 1.14823 0.96280 0.94473 1.20668 1.01031 0.93541 0.97387 1.21295 1.05360 0.96955 0.94267 1.17320 0.87325 0.91144 0.91491 1.19434 1.30774 0.90390 1.08024 0.90891 1.25862 0.93147 1.00911 0.94047 1.69808 1.21072 1.27183 1.24162 0.86464 0.80639 0.80329 0.79861 1.19114 1.20360 1.18910 1.21271 0.81963 0.95737 1.01432 1.21339 1.00913 0.96493 0.98356 0.93120 0.92931 0.92174 0.92110 0.92352 0.92080 0.91443 0.91764 0.90845 0.89671 0.92132 0.88766 0.90847 0.89906 0.89744 0.89638 0.86555 0.90964 0.90122 0.91638 0.91511 0.91023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.52 37.16 0.35 -0.96 16 2 C -0.12 -1.12 5.25 -26.73 -0.14 -1.26 16 3 C -0.08 -0.82 1.71 -93.68 -0.16 -0.98 16 4 H 0.06 0.59 7.35 -51.93 -0.38 0.21 16 5 C -0.11 -1.11 4.93 -28.01 -0.14 -1.25 16 6 C -0.13 -1.20 5.71 -27.32 -0.16 -1.35 16 7 C 0.11 1.27 5.95 -2.96 -0.02 1.25 16 8 N -0.62 -9.44 2.24 -172.56 -0.39 -9.82 16 9 C 0.51 10.21 7.23 -10.98 -0.08 10.13 16 10 O -0.52 -12.59 15.47 5.56 0.09 -12.51 16 11 C -0.07 -1.40 3.51 -29.04 -0.10 -1.51 16 12 C -0.18 -4.39 4.43 -103.91 -0.46 -4.85 16 13 C -0.08 -1.93 9.66 -39.66 -0.38 -2.31 16 14 C -0.24 -5.68 10.05 -39.29 -0.39 -6.08 16 15 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 16 C -0.16 -4.34 8.69 -38.87 -0.34 -4.68 16 17 C 0.13 3.52 5.56 -106.82 -0.59 2.92 16 18 C -0.46 -12.20 8.14 -37.74 -0.31 -12.51 16 19 H 0.07 1.91 6.67 -52.49 -0.35 1.56 16 20 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 21 N -0.80 -20.82 10.96 55.55 0.61 -20.21 16 22 Si 0.90 19.15 29.59 -169.99 -5.03 14.12 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 25 H -0.26 -5.71 7.11 56.52 0.40 -5.30 16 26 C 0.12 1.65 5.38 -4.09 -0.02 1.63 16 27 C -0.13 -1.61 4.74 -28.59 -0.14 -1.75 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.54 6.27 -51.93 -0.33 0.21 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.48 7.95 -51.93 -0.41 0.07 16 33 H 0.06 0.54 7.72 -51.93 -0.40 0.14 16 34 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 35 H 0.06 0.55 7.32 -51.93 -0.38 0.17 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.99 5.82 -51.93 -0.30 0.69 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.87 6.97 -51.93 -0.36 1.51 16 40 H 0.07 1.25 7.32 -51.93 -0.38 0.87 16 41 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.09 1.90 8.06 -52.48 -0.42 1.48 16 44 H 0.12 3.25 6.21 -52.48 -0.33 2.92 16 45 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 46 H 0.08 1.31 7.30 -51.93 -0.38 0.93 16 47 H 0.07 0.76 8.06 -51.93 -0.42 0.34 16 48 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 49 H 0.07 0.79 5.98 -51.93 -0.31 0.48 16 LS Contribution 374.96 15.07 5.65 5.65 Total: -1.00 -30.43 374.96 -10.69 -41.12 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -8.06 Total: 6.40 kcal Atomic # 6 Polarization: -21.18 SS G_CDS: -3.56 Total: -24.75 kcal Atomic # 7 Polarization: -30.26 SS G_CDS: 0.22 Total: -30.04 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.51 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.43 -10.69 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776932833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.278 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds