Wall clock time and date at job start Tue Mar 31 2020 11:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.46752 * 2 1 4 4 H 1.09004 * 108.45015 * 57.30884 * 3 2 1 5 5 C 1.52573 * 108.50966 * 174.99632 * 3 2 1 6 6 C 1.50881 * 109.35667 * 206.26770 * 5 3 2 7 7 C 1.53913 * 110.08476 * 268.10876 * 6 5 3 8 8 N 1.47604 * 112.16028 * 40.58828 * 7 6 5 9 9 C 1.34780 * 118.64326 * 222.12062 * 8 7 6 10 10 O 1.21276 * 119.99880 * 179.97438 * 9 8 7 11 11 C 1.50704 * 120.00042 * 359.97438 * 9 8 7 12 12 C 1.50693 * 109.46830 * 179.97438 * 11 9 8 13 13 C 1.37642 * 120.12805 * 264.99669 * 12 11 9 14 14 C 1.38610 * 120.24613 * 180.02562 * 13 12 11 15 15 C 1.38654 * 120.50547 * 359.97438 * 14 13 12 16 16 C 1.37599 * 120.24593 * 0.02562 * 15 14 13 17 17 C 1.40702 * 120.12824 * 84.72611 * 12 11 9 18 18 C 1.41397 * 120.24051 * 359.97438 * 17 12 11 19 19 H 1.07996 * 120.00312 * 333.88627 * 18 17 12 20 20 C 1.39951 * 119.99711 * 153.89973 * 18 17 12 21 21 N 1.30817 * 120.00132 * 343.70558 * 20 18 17 22 22 Si 1.86798 * 119.99930 * 163.71433 * 20 18 17 23 23 H 1.48496 * 109.47123 * 59.99353 * 22 20 18 24 24 H 1.48496 * 109.47256 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46877 * 299.99551 * 22 20 18 26 26 C 1.44579 * 122.71211 * 42.09842 * 8 7 6 27 27 C 1.47090 * 108.51539 * 299.76253 * 3 2 1 28 28 H 1.09001 * 109.46515 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47618 * 299.99697 * 1 2 3 30 30 H 1.08995 * 109.46956 * 60.00511 * 1 2 3 31 31 H 1.08993 * 109.47107 * 239.99881 * 2 1 3 32 32 H 1.09007 * 109.46772 * 119.99877 * 2 1 3 33 33 H 1.08996 * 109.49281 * 326.23048 * 5 3 2 34 34 H 1.09000 * 109.48710 * 86.30858 * 5 3 2 35 35 H 1.08999 * 109.37010 * 28.30741 * 6 5 3 36 36 H 1.09007 * 109.36791 * 147.92524 * 6 5 3 37 37 H 1.09004 * 108.94838 * 279.89252 * 7 6 5 38 38 H 1.09004 * 108.86451 * 161.22711 * 7 6 5 39 39 H 1.08997 * 109.46913 * 299.99840 * 11 9 8 40 40 H 1.09002 * 109.47175 * 59.99493 * 11 9 8 41 41 H 1.07994 * 119.87214 * 0.02562 * 13 12 11 42 42 H 1.08003 * 119.74853 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.88035 * 179.97438 * 15 14 13 44 44 H 1.08008 * 120.12618 * 179.97438 * 16 15 14 45 45 H 0.96998 * 120.00678 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.44662 * 149.25874 * 26 8 7 47 47 H 1.08993 * 109.44976 * 29.34175 * 26 8 7 48 48 H 1.08996 * 109.33058 * 296.20412 * 27 3 2 49 49 H 1.09003 * 109.32721 * 55.85724 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6284 1.9539 0.8702 5 6 3.5603 1.4188 0.1262 6 6 4.0296 2.7052 0.7598 7 6 4.3571 3.7422 -0.3294 8 7 3.3732 3.7237 -1.4296 9 6 3.8201 3.8184 -2.6976 10 8 3.0333 3.8052 -3.6204 11 6 5.2975 3.9406 -2.9687 12 6 5.5297 4.0294 -4.4550 13 6 5.8258 2.8956 -5.1770 14 6 6.0403 2.9746 -6.5441 15 6 5.9592 4.1934 -7.2001 16 6 5.6646 5.3399 -6.4984 17 6 5.4392 5.2709 -5.1110 18 6 5.1295 6.4413 -4.3806 19 1 4.5656 6.3715 -3.4623 20 6 5.5537 7.6905 -4.8480 21 7 6.4878 7.7646 -5.7608 22 14 4.7861 9.2519 -4.1681 23 1 5.0172 9.3196 -2.7028 24 1 5.4052 10.4329 -4.8216 25 1 3.3261 9.2443 -4.4392 26 6 1.9500 3.6077 -1.2031 27 6 1.5428 2.1136 -1.2108 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.8605 0.5761 0.7489 34 1 4.0057 1.3172 -0.8634 35 1 3.2450 3.0965 1.4074 36 1 4.9225 2.5108 1.3540 37 1 5.3460 3.5288 -0.7353 38 1 4.3663 4.7350 0.1205 39 1 5.6824 4.8390 -2.4862 40 1 5.8133 3.0659 -2.5723 41 1 5.8911 1.9409 -4.6764 42 1 6.2725 2.0798 -7.1027 43 1 6.1286 4.2434 -8.2656 44 1 5.6022 6.2884 -7.0113 45 1 6.7821 8.6303 -6.0845 46 1 1.4129 4.1344 -1.9921 47 1 1.6991 4.0474 -0.2379 48 1 1.9652 1.6291 -2.0911 49 1 0.4559 2.0387 -1.2443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776932833.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:18:58 Heat of formation + Delta-G solvation = -51.925349 kcal Electronic energy + Delta-G solvation = -27284.476791 eV Core-core repulsion = 23788.449992 eV Total energy + Delta-G solvation = -3496.026799 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.41811 -39.63704 -38.66906 -36.13924 -35.50306 -33.78968 -33.37096 -31.66823 -31.31590 -28.88267 -27.67265 -26.86216 -25.81653 -23.85770 -22.82115 -22.30647 -21.55344 -20.92561 -19.52787 -19.01378 -17.97875 -17.39288 -17.05877 -16.72551 -16.21489 -15.74881 -15.60124 -15.47828 -15.28979 -14.93005 -14.65593 -14.38097 -14.30705 -13.88109 -13.63014 -13.53474 -13.34892 -13.26732 -13.03553 -12.93351 -12.77093 -12.66088 -12.49902 -12.45675 -12.14353 -12.11255 -11.86950 -11.81976 -11.36198 -11.32133 -11.21028 -11.20060 -11.05276 -11.03012 -10.60589 -9.47810 -9.22997 -9.15597 -8.59368 -6.29477 1.00058 1.13350 1.34524 1.44983 1.53569 1.85705 2.19432 2.24443 2.78114 3.62450 3.72590 3.84935 3.92228 4.04618 4.13200 4.20625 4.29033 4.34622 4.43631 4.46753 4.53053 4.59819 4.64439 4.64867 4.69889 4.75490 4.76532 4.82234 4.92832 4.99795 5.02764 5.09461 5.15565 5.19274 5.20823 5.25796 5.27494 5.36300 5.37001 5.41725 5.53204 5.54629 5.60086 5.76955 5.89552 6.03605 6.16246 6.20877 6.42132 6.50079 6.73573 6.99402 7.11164 7.44713 8.37025 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014861 B = 0.004050 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.653338 B = 6911.449618 C = 7887.312971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.120 4.120 3 C -0.081 4.081 4 H 0.081 0.919 5 C -0.111 4.111 6 C -0.121 4.121 7 C 0.097 3.903 8 N -0.606 5.606 9 C 0.511 3.489 10 O -0.576 6.576 11 C -0.065 4.065 12 C -0.186 4.186 13 C -0.093 4.093 14 C -0.242 4.242 15 C -0.118 4.118 16 C -0.194 4.194 17 C 0.097 3.903 18 C -0.483 4.483 19 H 0.068 0.932 20 C 0.037 3.963 21 N -0.826 5.826 22 Si 0.970 3.030 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.272 1.272 26 C 0.115 3.885 27 C -0.121 4.121 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.106 0.894 44 H 0.097 0.903 45 H 0.286 0.714 46 H 0.048 0.952 47 H 0.097 0.903 48 H 0.031 0.969 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.616 -9.528 17.282 20.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.099 4.099 4 H 0.099 0.901 5 C -0.149 4.149 6 C -0.159 4.159 7 C -0.025 4.025 8 N -0.340 5.340 9 C 0.301 3.699 10 O -0.455 6.455 11 C -0.105 4.105 12 C -0.188 4.188 13 C -0.111 4.111 14 C -0.261 4.261 15 C -0.136 4.136 16 C -0.214 4.214 17 C 0.095 3.905 18 C -0.513 4.513 19 H 0.086 0.914 20 C -0.177 4.177 21 N -0.453 5.453 22 Si 0.791 3.209 23 H -0.176 1.176 24 H -0.190 1.190 25 H -0.197 1.197 26 C -0.008 4.008 27 C -0.159 4.159 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.059 0.941 35 H 0.097 0.903 36 H 0.116 0.884 37 H 0.104 0.896 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.123 0.877 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.124 0.876 44 H 0.115 0.885 45 H 0.097 0.903 46 H 0.067 0.933 47 H 0.115 0.885 48 H 0.050 0.950 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.885 -9.358 16.710 20.036 hybrid contribution -0.250 0.879 -0.633 1.112 sum -6.136 -8.479 16.077 19.183 Atomic orbital electron populations 1.21872 0.95675 1.01790 1.01935 1.21677 0.96189 0.96150 1.01707 1.20098 0.95719 0.96196 0.97907 0.90110 1.21134 0.94937 0.98288 1.00516 1.21735 1.03411 0.94082 0.96668 1.22272 0.91761 1.00633 0.87804 1.47818 1.07421 1.72944 1.05801 1.21163 0.91633 0.74657 0.82462 1.90640 1.58748 1.50871 1.45197 1.20285 0.92023 1.03652 0.94530 1.19577 1.10987 0.93908 0.94340 1.20702 0.99430 0.96626 0.94317 1.20700 1.13581 0.96834 0.94993 1.20943 1.00653 0.93460 0.98528 1.21311 1.08012 0.97119 0.94911 1.17712 0.88280 0.92663 0.91852 1.19570 1.31842 0.91425 1.08447 0.91351 1.26652 0.93126 1.03701 0.94243 1.69868 1.21949 1.28302 1.25146 0.85435 0.78950 0.76533 0.79942 1.17617 1.18952 1.19720 1.21419 0.80753 0.96882 1.01765 1.21242 1.01430 0.95041 0.98207 0.92495 0.91827 0.93266 0.93633 0.90776 0.90219 0.94069 0.90299 0.88420 0.89593 0.90937 0.88857 0.87658 0.86935 0.86728 0.87635 0.88486 0.90327 0.93311 0.88454 0.94978 0.90033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.31 9.52 71.98 0.69 -1.62 16 2 C -0.12 -1.92 5.25 30.59 0.16 -1.76 16 3 C -0.08 -1.41 1.71 -12.77 -0.02 -1.43 16 4 H 0.08 1.18 7.35 -2.38 -0.02 1.16 16 5 C -0.11 -1.90 4.93 29.76 0.15 -1.75 16 6 C -0.12 -1.75 5.71 30.21 0.17 -1.58 16 7 C 0.10 2.04 5.95 86.48 0.51 2.55 16 8 N -0.61 -18.08 2.24 -818.23 -1.83 -19.91 16 9 C 0.51 20.69 7.23 87.66 0.63 21.32 16 10 O -0.58 -29.23 15.47 -3.02 -0.05 -29.27 16 11 C -0.07 -2.62 3.51 29.10 0.10 -2.52 16 12 C -0.19 -9.28 4.43 -19.41 -0.09 -9.37 16 13 C -0.09 -4.33 9.66 22.22 0.21 -4.12 16 14 C -0.24 -11.38 10.05 22.46 0.23 -11.15 16 15 C -0.12 -5.96 10.02 22.22 0.22 -5.74 16 16 C -0.19 -11.03 8.69 22.73 0.20 -10.83 16 17 C 0.10 5.48 5.56 -21.29 -0.12 5.36 16 18 C -0.48 -26.79 8.14 23.46 0.19 -26.60 16 19 H 0.07 3.72 6.67 -2.91 -0.02 3.70 16 20 C 0.04 1.94 5.16 85.26 0.44 2.38 16 21 N -0.83 -44.60 10.96 21.83 0.24 -44.36 16 22 Si 0.97 39.84 29.59 68.60 2.03 41.87 16 23 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 25 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 26 C 0.12 3.11 5.38 87.37 0.47 3.58 16 27 C -0.12 -2.86 4.74 29.39 0.14 -2.72 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.83 6.27 -2.39 -0.01 0.81 16 31 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.98 7.95 -2.38 -0.02 0.96 16 33 H 0.08 1.10 7.72 -2.39 -0.02 1.08 16 34 H 0.04 0.93 7.48 -2.39 -0.02 0.92 16 35 H 0.08 0.97 7.32 -2.39 -0.02 0.95 16 36 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.09 1.80 5.82 -2.39 -0.01 1.79 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.39 16 39 H 0.09 3.73 6.97 -2.39 -0.02 3.71 16 40 H 0.11 3.43 7.32 -2.39 -0.02 3.42 16 41 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 43 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 44 H 0.10 5.75 6.21 -2.91 -0.02 5.73 16 45 H 0.29 14.03 8.30 -92.71 -0.77 13.27 16 46 H 0.05 1.64 7.30 -2.38 -0.02 1.62 16 47 H 0.10 2.00 8.06 -2.39 -0.02 1.98 16 48 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 49 H 0.08 1.75 5.98 -2.39 -0.01 1.74 16 Total: -1.00 -70.16 374.96 5.60 -64.56 By element: Atomic # 1 Polarization: 32.20 SS G_CDS: 0.92 Total: 33.12 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 4.29 Total: -46.00 kcal Atomic # 7 Polarization: -62.68 SS G_CDS: -1.59 Total: -64.27 kcal Atomic # 8 Polarization: -29.23 SS G_CDS: -0.05 Total: -29.27 kcal Atomic # 14 Polarization: 39.84 SS G_CDS: 2.03 Total: 41.87 kcal Total: -70.16 5.60 -64.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776932833.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.632 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds