Wall clock time and date at job start Tue Mar 31 2020 11:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46853 * 2 1 4 4 H 1.08999 * 109.47338 * 307.52278 * 3 2 1 5 5 C 1.53002 * 109.46862 * 187.51939 * 3 2 1 6 6 C 1.50697 * 109.47028 * 65.00313 * 5 3 2 7 7 C 1.38254 * 120.00134 * 89.99787 * 6 5 3 8 8 C 1.38212 * 119.99746 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.00535 * 359.95467 * 8 7 6 10 10 C 1.38216 * 119.99578 * 0.02682 * 9 8 7 11 11 C 1.50698 * 119.99615 * 179.97438 * 10 9 8 12 12 C 1.38222 * 119.99598 * 269.72454 * 6 5 3 13 13 C 1.50702 * 109.46878 * 67.52071 * 3 2 1 14 14 O 1.21282 * 119.99557 * 113.89100 * 13 3 2 15 15 N 1.34772 * 120.00012 * 293.88890 * 13 3 2 16 16 C 1.46505 * 119.99873 * 176.36777 * 15 13 3 17 17 C 1.52998 * 109.47098 * 184.85084 * 16 15 13 18 18 C 1.50702 * 115.55113 * 304.29538 * 17 16 15 19 19 H 1.08000 * 119.99687 * 144.23357 * 18 17 16 20 20 C 1.37877 * 119.99867 * 324.22923 * 18 17 16 21 21 N 1.31512 * 120.00060 * 3.25770 * 20 18 17 22 22 Si 1.86794 * 119.99841 * 183.24852 * 20 18 17 23 23 H 1.48499 * 109.47071 * 94.99824 * 22 20 18 24 24 H 1.48503 * 109.47420 * 214.99954 * 22 20 18 25 25 H 1.48503 * 109.47539 * 335.00269 * 22 20 18 26 26 C 1.53001 * 117.49796 * 158.62336 * 17 16 15 27 27 C 1.52999 * 117.49674 * 89.96346 * 17 16 15 28 28 H 1.08999 * 109.47064 * 60.91706 * 1 2 3 29 29 H 1.09008 * 109.47215 * 180.91217 * 1 2 3 30 30 H 1.08998 * 109.47446 * 300.91097 * 1 2 3 31 31 H 1.08996 * 109.46942 * 239.99847 * 2 1 3 32 32 H 1.09001 * 109.46972 * 120.00181 * 2 1 3 33 33 H 1.08996 * 109.47065 * 185.00022 * 5 3 2 34 34 H 1.09007 * 109.47196 * 305.00080 * 5 3 2 35 35 H 1.07997 * 120.00003 * 359.97438 * 7 6 5 36 36 H 1.08003 * 119.99820 * 179.97438 * 8 7 6 37 37 H 1.07995 * 120.00399 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47560 * 89.99890 * 11 10 9 39 39 H 1.09000 * 109.46831 * 209.99307 * 11 10 9 40 40 H 1.08996 * 109.47042 * 329.99292 * 11 10 9 41 41 H 1.07996 * 120.00189 * 0.02562 * 12 6 5 42 42 H 0.96997 * 120.00489 * 356.37015 * 15 13 3 43 43 H 1.08996 * 109.46904 * 304.85653 * 16 15 13 44 44 H 1.09008 * 109.47135 * 64.85376 * 16 15 13 45 45 H 0.96998 * 119.99986 * 185.00574 * 21 20 18 46 46 H 1.09008 * 117.49560 * 0.02562 * 26 17 16 47 47 H 1.08992 * 117.49938 * 145.02366 * 26 17 16 48 48 H 1.08997 * 117.50344 * 214.97846 * 27 17 16 49 49 H 1.09010 * 117.49945 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5709 1.9937 -0.8150 5 6 3.5583 1.4467 -0.1888 6 6 3.8962 0.9044 -1.5536 7 6 3.9917 1.7618 -2.6339 8 6 4.3012 1.2643 -3.8857 9 6 4.5162 -0.0907 -4.0574 10 6 4.4211 -0.9478 -2.9773 11 6 4.6548 -2.4247 -3.1646 12 6 4.1163 -0.4495 -1.7241 13 6 1.6952 2.0971 1.3129 14 8 2.5779 2.4248 2.0773 15 7 0.4060 2.3184 1.6375 16 6 0.0665 2.8816 2.9467 17 6 -1.4546 2.9186 3.1071 18 6 -2.2041 3.6581 2.0288 19 1 -3.1701 3.3028 1.7020 20 6 -1.6564 4.7883 1.4598 21 7 -0.4529 5.1846 1.8119 22 14 -2.6239 5.7565 0.1887 23 1 -3.3417 6.8715 0.8570 24 1 -1.6925 6.3066 -0.8288 25 1 -3.6068 4.8611 -0.4727 26 6 -2.0135 2.9867 4.5297 27 6 -2.1301 1.6914 3.7223 28 1 -0.3633 0.4995 -0.8981 29 1 -0.3634 -1.0276 0.0164 30 1 -0.3634 0.5279 0.8817 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9326 2.4665 -0.1002 34 1 4.0212 0.8220 0.5753 35 1 3.8237 2.8201 -2.4998 36 1 4.3754 1.9340 -4.7297 37 1 4.7584 -0.4794 -5.0355 38 1 5.7115 -2.6472 -3.0156 39 1 4.0607 -2.9813 -2.4398 40 1 4.3613 -2.7139 -4.1737 41 1 4.0456 -1.1187 -0.8795 42 1 -0.2972 2.1049 1.0044 43 1 0.4997 2.2622 3.7320 44 1 0.4644 3.8937 3.0212 45 1 -0.0965 6.0181 1.4669 46 1 -1.2974 3.0056 5.3514 47 1 -2.9235 3.5660 4.6857 48 1 -3.1168 1.4191 3.3476 49 1 -1.4909 0.8575 4.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822626483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:35 Heat of formation + Delta-G solvation = -8.345589 kcal Electronic energy + Delta-G solvation = -26774.645330 eV Core-core repulsion = 23280.508291 eV Total energy + Delta-G solvation = -3494.137039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.88753 -38.88140 -36.76436 -35.16921 -33.42096 -32.67734 -32.20679 -31.43232 -28.85200 -26.97927 -26.21914 -25.44160 -24.19233 -22.07734 -21.78673 -21.25539 -20.21669 -19.36093 -18.88602 -16.93765 -16.49175 -15.97626 -15.47390 -15.11777 -14.84427 -14.67251 -14.46419 -14.02221 -13.81795 -13.52482 -13.34871 -13.13145 -13.00553 -12.80877 -12.69578 -12.49982 -12.30538 -11.96923 -11.73745 -11.52302 -11.40240 -11.12772 -11.00628 -10.95415 -10.82044 -10.73374 -10.60663 -10.52441 -10.42240 -10.25604 -9.68871 -9.07312 -8.87923 -8.83494 -8.75837 -8.53530 -8.28602 -7.75822 -6.01499 -4.22455 1.34395 1.37774 3.19903 3.29274 3.30549 3.55188 3.71014 4.18538 4.28213 4.73983 4.77946 4.89061 4.98731 5.04800 5.14021 5.19822 5.24265 5.34145 5.42514 5.46000 5.48079 5.54126 5.66030 5.72904 5.75942 5.83323 5.93473 6.01897 6.04744 6.05243 6.18317 6.21725 6.30759 6.32164 6.44299 6.48598 6.52924 6.54668 6.58120 6.62411 6.72759 6.73904 6.89725 7.02164 7.11534 7.25315 7.57996 7.69457 7.99314 8.30103 8.62264 8.82507 9.25442 9.41529 10.86908 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.003556 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.693844 B = 7871.897099 C = 8596.218780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.114 4.114 3 C -0.101 4.101 4 H 0.090 0.910 5 C -0.061 4.061 6 C -0.066 4.066 7 C -0.122 4.122 8 C -0.115 4.115 9 C -0.131 4.131 10 C -0.089 4.089 11 C -0.113 4.113 12 C -0.116 4.116 13 C 0.508 3.492 14 O -0.566 6.566 15 N -0.682 5.682 16 C 0.159 3.841 17 C 0.037 3.963 18 C -0.497 4.497 19 H 0.061 0.939 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.892 3.108 23 H -0.280 1.280 24 H -0.285 1.285 25 H -0.273 1.273 26 C -0.199 4.199 27 C -0.212 4.212 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.121 0.879 42 H 0.401 0.599 43 H 0.020 0.980 44 H 0.116 0.884 45 H 0.262 0.738 46 H 0.067 0.933 47 H 0.079 0.921 48 H 0.075 0.925 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.735 -11.417 -9.967 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.151 4.151 3 C -0.123 4.123 4 H 0.108 0.892 5 C -0.099 4.099 6 C -0.066 4.066 7 C -0.140 4.140 8 C -0.133 4.133 9 C -0.149 4.149 10 C -0.089 4.089 11 C -0.170 4.170 12 C -0.134 4.134 13 C 0.293 3.707 14 O -0.447 6.447 15 N -0.332 5.332 16 C 0.036 3.964 17 C 0.036 3.964 18 C -0.534 4.534 19 H 0.079 0.921 20 C -0.130 4.130 21 N -0.503 5.503 22 Si 0.719 3.281 23 H -0.206 1.206 24 H -0.211 1.211 25 H -0.197 1.197 26 C -0.237 4.237 27 C -0.250 4.250 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.139 0.861 42 H 0.239 0.761 43 H 0.038 0.962 44 H 0.133 0.867 45 H 0.073 0.927 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.093 0.907 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.488 -11.060 -9.500 16.871 hybrid contribution -1.016 0.610 -0.906 1.492 sum 7.471 -10.450 -10.406 16.532 Atomic orbital electron populations 1.22158 0.95362 1.02137 1.03393 1.21547 0.96446 0.94752 1.02395 1.21315 0.96310 0.97483 0.97168 0.89152 1.20394 0.94489 1.02504 0.92523 1.19978 0.97560 0.93419 0.95659 1.21111 1.00521 0.99891 0.92480 1.21101 0.99709 0.95348 0.97167 1.20959 1.02159 0.93495 0.98252 1.19887 0.99625 0.95884 0.93498 1.20778 1.01965 0.91882 1.02376 1.20966 1.00856 0.94916 0.96685 1.20234 0.83313 0.79447 0.87691 1.90609 1.47632 1.53692 1.52754 1.46068 1.06495 1.61535 1.19061 1.21144 0.93741 1.00307 0.81182 1.19239 0.91419 0.94106 0.91621 1.20544 1.03686 1.10483 1.18717 0.92084 1.25002 0.94370 0.97373 0.96263 1.69864 1.14612 1.21570 1.44247 0.86578 0.79851 0.80423 0.81255 1.20591 1.21108 1.19750 1.22936 1.02818 1.00777 0.97205 1.22948 1.01781 0.91715 1.08511 0.92461 0.92671 0.90465 0.90949 0.91849 0.90166 0.90347 0.86032 0.86309 0.86544 0.91375 0.91555 0.91754 0.86068 0.76057 0.96199 0.86694 0.92693 0.91495 0.90247 0.90664 0.91396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 9.16 37.16 0.34 -2.04 16 2 C -0.11 -1.54 5.17 -26.73 -0.14 -1.68 16 3 C -0.10 -1.60 2.22 -91.77 -0.20 -1.80 16 4 H 0.09 1.42 8.13 -51.93 -0.42 1.00 16 5 C -0.06 -0.90 4.15 -27.88 -0.12 -1.02 16 6 C -0.07 -0.85 4.72 -104.62 -0.49 -1.34 16 7 C -0.12 -1.51 9.70 -39.59 -0.38 -1.89 16 8 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 9 C -0.13 -1.35 9.70 -39.58 -0.38 -1.74 16 10 C -0.09 -0.94 5.88 -104.62 -0.62 -1.55 16 11 C -0.11 -0.89 10.01 36.00 0.36 -0.53 16 12 C -0.12 -1.35 7.52 -39.58 -0.30 -1.65 16 13 C 0.51 10.37 7.04 -10.99 -0.08 10.29 16 14 O -0.57 -13.43 15.99 5.56 0.09 -13.34 16 15 N -0.68 -14.48 4.22 -60.29 -0.25 -14.73 16 16 C 0.16 3.77 4.61 -4.04 -0.02 3.75 16 17 C 0.04 0.86 2.04 -155.66 -0.32 0.54 16 18 C -0.50 -12.47 8.35 -34.44 -0.29 -12.76 16 19 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 20 C 0.07 1.87 5.36 -17.82 -0.10 1.78 16 21 N -0.87 -22.84 10.23 55.43 0.57 -22.28 16 22 Si 0.89 19.89 29.54 -169.99 -5.02 14.86 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 26 C -0.20 -4.33 9.96 -26.69 -0.27 -4.59 16 27 C -0.21 -4.38 9.93 -26.69 -0.27 -4.65 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 30 H 0.08 1.23 4.93 -51.93 -0.26 0.97 16 31 H 0.07 0.88 5.76 -51.93 -0.30 0.58 16 32 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 33 H 0.08 1.27 7.99 -51.93 -0.41 0.86 16 34 H 0.08 1.16 8.08 -51.92 -0.42 0.74 16 35 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 36 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 37 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 40 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 41 H 0.12 1.28 7.96 -52.49 -0.42 0.86 16 42 H 0.40 8.20 5.42 -40.82 -0.22 7.98 16 43 H 0.02 0.47 8.10 -51.93 -0.42 0.05 16 44 H 0.12 3.11 5.82 -51.92 -0.30 2.81 16 45 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 46 H 0.07 1.38 8.14 -51.92 -0.42 0.96 16 47 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 48 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 49 H 0.07 1.32 8.14 -51.92 -0.42 0.89 16 LS Contribution 390.67 15.07 5.89 5.89 Total: -1.00 -28.05 390.67 -10.60 -38.65 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -8.21 Total: 13.49 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -3.66 Total: -22.54 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.31 Total: -37.01 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: 0.09 Total: -13.34 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.05 -10.60 -38.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822626483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.303 kcal (2) G-P(sol) polarization free energy of solvation -28.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds