Wall clock time and date at job start Tue Mar 31 2020 11:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46853 * 2 1 4 4 H 1.08999 * 109.47338 * 307.52278 * 3 2 1 5 5 C 1.53002 * 109.46862 * 187.51939 * 3 2 1 6 6 C 1.50697 * 109.47028 * 65.00313 * 5 3 2 7 7 C 1.38254 * 120.00134 * 89.99787 * 6 5 3 8 8 C 1.38212 * 119.99746 * 180.02562 * 7 6 5 9 9 C 1.38260 * 120.00535 * 359.95467 * 8 7 6 10 10 C 1.38216 * 119.99578 * 0.02682 * 9 8 7 11 11 C 1.50698 * 119.99615 * 179.97438 * 10 9 8 12 12 C 1.38222 * 119.99598 * 269.72454 * 6 5 3 13 13 C 1.50702 * 109.46878 * 67.52071 * 3 2 1 14 14 O 1.21282 * 119.99557 * 113.89100 * 13 3 2 15 15 N 1.34772 * 120.00012 * 293.88890 * 13 3 2 16 16 C 1.46505 * 119.99873 * 176.36777 * 15 13 3 17 17 C 1.52998 * 109.47098 * 184.85084 * 16 15 13 18 18 C 1.50702 * 115.55113 * 304.29538 * 17 16 15 19 19 H 1.08000 * 119.99687 * 144.23357 * 18 17 16 20 20 C 1.37877 * 119.99867 * 324.22923 * 18 17 16 21 21 N 1.31512 * 120.00060 * 3.25770 * 20 18 17 22 22 Si 1.86794 * 119.99841 * 183.24852 * 20 18 17 23 23 H 1.48499 * 109.47071 * 94.99824 * 22 20 18 24 24 H 1.48503 * 109.47420 * 214.99954 * 22 20 18 25 25 H 1.48503 * 109.47539 * 335.00269 * 22 20 18 26 26 C 1.53001 * 117.49796 * 158.62336 * 17 16 15 27 27 C 1.52999 * 117.49674 * 89.96346 * 17 16 15 28 28 H 1.08999 * 109.47064 * 60.91706 * 1 2 3 29 29 H 1.09008 * 109.47215 * 180.91217 * 1 2 3 30 30 H 1.08998 * 109.47446 * 300.91097 * 1 2 3 31 31 H 1.08996 * 109.46942 * 239.99847 * 2 1 3 32 32 H 1.09001 * 109.46972 * 120.00181 * 2 1 3 33 33 H 1.08996 * 109.47065 * 185.00022 * 5 3 2 34 34 H 1.09007 * 109.47196 * 305.00080 * 5 3 2 35 35 H 1.07997 * 120.00003 * 359.97438 * 7 6 5 36 36 H 1.08003 * 119.99820 * 179.97438 * 8 7 6 37 37 H 1.07995 * 120.00399 * 180.02562 * 9 8 7 38 38 H 1.09004 * 109.47560 * 89.99890 * 11 10 9 39 39 H 1.09000 * 109.46831 * 209.99307 * 11 10 9 40 40 H 1.08996 * 109.47042 * 329.99292 * 11 10 9 41 41 H 1.07996 * 120.00189 * 0.02562 * 12 6 5 42 42 H 0.96997 * 120.00489 * 356.37015 * 15 13 3 43 43 H 1.08996 * 109.46904 * 304.85653 * 16 15 13 44 44 H 1.09008 * 109.47135 * 64.85376 * 16 15 13 45 45 H 0.96998 * 119.99986 * 185.00574 * 21 20 18 46 46 H 1.09008 * 117.49560 * 0.02562 * 26 17 16 47 47 H 1.08992 * 117.49938 * 145.02366 * 26 17 16 48 48 H 1.08997 * 117.50344 * 214.97846 * 27 17 16 49 49 H 1.09010 * 117.49945 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5709 1.9937 -0.8150 5 6 3.5583 1.4467 -0.1888 6 6 3.8962 0.9044 -1.5536 7 6 3.9917 1.7618 -2.6339 8 6 4.3012 1.2643 -3.8857 9 6 4.5162 -0.0907 -4.0574 10 6 4.4211 -0.9478 -2.9773 11 6 4.6548 -2.4247 -3.1646 12 6 4.1163 -0.4495 -1.7241 13 6 1.6952 2.0971 1.3129 14 8 2.5779 2.4248 2.0773 15 7 0.4060 2.3184 1.6375 16 6 0.0665 2.8816 2.9467 17 6 -1.4546 2.9186 3.1071 18 6 -2.2041 3.6581 2.0288 19 1 -3.1701 3.3028 1.7020 20 6 -1.6564 4.7883 1.4598 21 7 -0.4529 5.1846 1.8119 22 14 -2.6239 5.7565 0.1887 23 1 -3.3417 6.8715 0.8570 24 1 -1.6925 6.3066 -0.8288 25 1 -3.6068 4.8611 -0.4727 26 6 -2.0135 2.9867 4.5297 27 6 -2.1301 1.6914 3.7223 28 1 -0.3633 0.4995 -0.8981 29 1 -0.3634 -1.0276 0.0164 30 1 -0.3634 0.5279 0.8817 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.9326 2.4665 -0.1002 34 1 4.0212 0.8220 0.5753 35 1 3.8237 2.8201 -2.4998 36 1 4.3754 1.9340 -4.7297 37 1 4.7584 -0.4794 -5.0355 38 1 5.7115 -2.6472 -3.0156 39 1 4.0607 -2.9813 -2.4398 40 1 4.3613 -2.7139 -4.1737 41 1 4.0456 -1.1187 -0.8795 42 1 -0.2972 2.1049 1.0044 43 1 0.4997 2.2622 3.7320 44 1 0.4644 3.8937 3.0212 45 1 -0.0965 6.0181 1.4669 46 1 -1.2974 3.0056 5.3514 47 1 -2.9235 3.5660 4.6857 48 1 -3.1168 1.4191 3.3476 49 1 -1.4909 0.8575 4.0125 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000822626483.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:34 Heat of formation + Delta-G solvation = -19.929960 kcal Electronic energy + Delta-G solvation = -26775.147666 eV Core-core repulsion = 23280.508291 eV Total energy + Delta-G solvation = -3494.639375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.15105 -40.13125 -38.51191 -36.47896 -34.92284 -34.17254 -33.64418 -32.45767 -29.96138 -28.00099 -27.69038 -27.29295 -25.39786 -23.18722 -22.95037 -22.78194 -21.33731 -21.15036 -20.43080 -18.54727 -17.80872 -17.20476 -16.84985 -16.59697 -16.41531 -15.99298 -15.69897 -15.51581 -14.90790 -14.85673 -14.50629 -14.38689 -14.17712 -14.14111 -13.93970 -13.58212 -13.53478 -13.29433 -13.03181 -12.94606 -12.84339 -12.56635 -12.56179 -12.29741 -12.08956 -12.04663 -11.88458 -11.84826 -11.73322 -11.61332 -11.48223 -10.92108 -10.72199 -10.51729 -10.13239 -9.62589 -9.56456 -9.43266 -7.94488 -6.21144 0.46629 0.52099 1.41455 1.46142 1.53834 1.91146 2.40770 2.55838 2.89175 3.08065 3.62162 3.77520 3.81203 3.94729 4.03801 4.09506 4.15405 4.26678 4.31466 4.42165 4.46495 4.54474 4.54560 4.61869 4.67733 4.74105 4.77904 4.80616 4.87140 4.89192 4.95491 4.97545 5.05373 5.08963 5.11181 5.14505 5.26447 5.27743 5.33468 5.36412 5.45309 5.52909 5.60582 5.61735 5.73377 5.78705 5.92555 6.01196 6.17883 6.37789 6.78174 7.02417 7.44537 7.58510 8.91353 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015703 B = 0.003556 C = 0.003256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.693844 B = 7871.897099 C = 8596.218780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.104 4.104 3 C -0.091 4.091 4 H 0.092 0.908 5 C -0.053 4.053 6 C -0.078 4.078 7 C -0.140 4.140 8 C -0.119 4.119 9 C -0.132 4.132 10 C -0.091 4.091 11 C -0.112 4.112 12 C -0.124 4.124 13 C 0.502 3.498 14 O -0.605 6.605 15 N -0.678 5.678 16 C 0.170 3.830 17 C 0.010 3.990 18 C -0.503 4.503 19 H 0.059 0.941 20 C 0.035 3.965 21 N -0.891 5.891 22 Si 0.947 3.053 23 H -0.282 1.282 24 H -0.289 1.289 25 H -0.263 1.263 26 C -0.201 4.201 27 C -0.185 4.185 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.053 0.947 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.406 0.594 43 H 0.014 0.986 44 H 0.079 0.921 45 H 0.257 0.743 46 H 0.073 0.927 47 H 0.078 0.922 48 H 0.085 0.915 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.265 -13.619 -11.999 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.142 4.142 3 C -0.112 4.112 4 H 0.110 0.890 5 C -0.091 4.091 6 C -0.078 4.078 7 C -0.159 4.159 8 C -0.137 4.137 9 C -0.149 4.149 10 C -0.091 4.091 11 C -0.169 4.169 12 C -0.142 4.142 13 C 0.289 3.711 14 O -0.488 6.488 15 N -0.328 5.328 16 C 0.046 3.954 17 C 0.009 3.991 18 C -0.541 4.541 19 H 0.078 0.922 20 C -0.166 4.166 21 N -0.529 5.529 22 Si 0.773 3.227 23 H -0.209 1.209 24 H -0.215 1.215 25 H -0.188 1.188 26 C -0.239 4.239 27 C -0.223 4.223 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.112 0.888 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.134 0.866 36 H 0.156 0.844 37 H 0.160 0.840 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.148 0.852 42 H 0.245 0.755 43 H 0.032 0.968 44 H 0.097 0.903 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.104 0.896 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.991 -13.281 -11.543 19.326 hybrid contribution -0.842 1.275 -0.259 1.550 sum 7.149 -12.006 -11.802 18.290 Atomic orbital electron populations 1.22131 0.95195 1.03179 1.02372 1.21511 0.96445 0.92883 1.03317 1.21288 0.97291 0.98619 0.93996 0.89001 1.20243 0.93489 1.01305 0.94020 1.19800 0.99303 0.94270 0.94460 1.21205 1.01583 0.99785 0.93284 1.21356 0.99042 0.96245 0.97012 1.21320 1.01041 0.93162 0.99412 1.20234 0.98453 0.97483 0.92935 1.20832 1.02723 0.89896 1.03444 1.21100 1.01014 0.94332 0.97731 1.21081 0.82466 0.78660 0.88877 1.90580 1.48540 1.55250 1.54453 1.46054 1.07084 1.61264 1.18393 1.20796 0.94062 0.98192 0.82325 1.19262 0.91059 0.96519 0.92259 1.20736 1.03612 1.10661 1.19070 0.92234 1.25595 0.94980 0.98223 0.97809 1.70052 1.15826 1.21586 1.45403 0.85704 0.78648 0.79130 0.79171 1.20860 1.21511 1.18762 1.22962 1.02727 1.01690 0.96551 1.22933 1.01945 0.91165 1.06214 0.92034 0.90540 0.92835 0.88846 0.91955 0.92354 0.90873 0.86592 0.84448 0.84049 0.90444 0.90981 0.90370 0.85239 0.75510 0.96805 0.90348 0.93336 0.90821 0.90363 0.89641 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.42 9.16 71.98 0.66 -3.76 16 2 C -0.10 -2.68 5.17 30.59 0.16 -2.53 16 3 C -0.09 -2.88 2.22 -11.54 -0.03 -2.91 16 4 H 0.09 2.90 8.13 -2.39 -0.02 2.88 16 5 C -0.05 -1.59 4.15 29.85 0.12 -1.46 16 6 C -0.08 -1.98 4.72 -19.87 -0.09 -2.07 16 7 C -0.14 -3.41 9.70 22.27 0.22 -3.20 16 8 C -0.12 -2.38 10.05 22.27 0.22 -2.15 16 9 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 10 C -0.09 -1.68 5.88 -19.87 -0.12 -1.79 16 11 C -0.11 -1.40 10.01 71.24 0.71 -0.68 16 12 C -0.12 -2.67 7.52 22.27 0.17 -2.50 16 13 C 0.50 21.12 7.04 87.66 0.62 21.74 16 14 O -0.60 -30.01 15.99 -3.04 -0.05 -30.06 16 15 N -0.68 -29.47 4.22 -463.05 -1.95 -31.42 16 16 C 0.17 8.29 4.61 86.38 0.40 8.69 16 17 C 0.01 0.45 2.04 -52.93 -0.11 0.34 16 18 C -0.50 -25.19 8.35 25.60 0.21 -24.98 16 19 H 0.06 2.94 7.82 -2.91 -0.02 2.92 16 20 C 0.04 1.80 5.36 84.66 0.45 2.25 16 21 N -0.89 -48.28 10.23 21.45 0.22 -48.06 16 22 Si 0.95 40.91 29.54 68.60 2.03 42.94 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 C -0.20 -8.62 9.96 30.62 0.30 -8.32 16 27 C -0.19 -7.38 9.93 30.62 0.30 -7.07 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.05 1.65 4.93 -2.39 -0.01 1.64 16 31 H 0.09 2.06 5.76 -2.39 -0.01 2.05 16 32 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 33 H 0.06 1.97 7.99 -2.39 -0.02 1.95 16 34 H 0.07 2.23 8.08 -2.38 -0.02 2.21 16 35 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 36 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.14 1.79 8.06 -2.91 -0.02 1.76 16 38 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.83 8.09 -2.39 -0.02 0.81 16 40 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 41 H 0.13 2.50 7.96 -2.91 -0.02 2.48 16 42 H 0.41 16.77 5.42 -92.71 -0.50 16.27 16 43 H 0.01 0.67 8.10 -2.39 -0.02 0.65 16 44 H 0.08 4.45 5.82 -2.38 -0.01 4.43 16 45 H 0.26 13.68 8.32 -92.71 -0.77 12.91 16 46 H 0.07 3.03 8.14 -2.38 -0.02 3.01 16 47 H 0.08 3.34 8.14 -2.39 -0.02 3.33 16 48 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 49 H 0.08 3.04 8.14 -2.38 -0.02 3.02 16 Total: -1.00 -61.05 390.67 5.09 -55.95 By element: Atomic # 1 Polarization: 42.76 SS G_CDS: 0.42 Total: 43.18 kcal Atomic # 6 Polarization: -36.96 SS G_CDS: 4.42 Total: -32.54 kcal Atomic # 7 Polarization: -77.74 SS G_CDS: -1.73 Total: -79.48 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -0.05 Total: -30.06 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -61.05 5.09 -55.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822626483.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.025 kcal (2) G-P(sol) polarization free energy of solvation -61.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds