Wall clock time and date at job start Tue Mar 31 2020 11:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52999 * 109.46987 * 2 1 4 4 H 1.08990 * 110.82040 * 51.66223 * 3 2 1 5 5 C 1.54889 * 110.75560 * 288.32634 * 3 2 1 6 6 C 1.54270 * 104.19904 * 203.74852 * 5 3 2 7 7 C 1.53874 * 106.59619 * 23.60820 * 6 5 3 8 8 C 1.54273 * 106.59875 * 0.02562 * 7 6 5 9 9 H 1.08999 * 110.48327 * 95.19967 * 8 7 6 10 10 C 1.50693 * 110.48718 * 217.70867 * 8 7 6 11 11 O 1.21287 * 120.00219 * 118.54655 * 10 8 7 12 12 N 1.34784 * 120.00268 * 298.54893 * 10 8 7 13 13 C 1.46496 * 119.99437 * 354.95778 * 12 10 8 14 14 C 1.50703 * 109.47674 * 90.00318 * 13 12 10 15 15 H 1.08001 * 119.99402 * 359.97438 * 14 13 12 16 16 C 1.37868 * 120.00493 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00115 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 120.00005 * 359.97438 * 16 14 13 19 19 H 1.48508 * 109.47049 * 270.00223 * 18 16 14 20 20 H 1.48502 * 109.47079 * 30.00050 * 18 16 14 21 21 H 1.48493 * 109.47299 * 150.00155 * 18 16 14 22 22 C 1.39923 * 120.00320 * 174.95270 * 12 10 8 23 23 C 1.38868 * 120.07058 * 291.91790 * 22 12 10 24 24 C 1.38118 * 119.92930 * 179.76336 * 23 22 12 25 25 C 1.38285 * 120.06711 * 0.48696 * 24 23 22 26 26 C 1.50699 * 119.92875 * 179.74616 * 25 24 23 27 27 C 1.38282 * 120.14025 * 359.76013 * 25 24 23 28 28 C 1.38111 * 120.07464 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.47027 * 59.99892 * 1 2 3 30 30 H 1.09000 * 109.46967 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46787 * 300.00299 * 1 2 3 32 32 H 1.08995 * 109.46663 * 239.99748 * 2 1 3 33 33 H 1.08999 * 109.47027 * 120.00108 * 2 1 3 34 34 H 1.09001 * 110.48532 * 85.06886 * 5 3 2 35 35 H 1.09003 * 110.60322 * 322.48208 * 5 3 2 36 36 H 1.08998 * 110.02607 * 264.32722 * 6 5 3 37 37 H 1.08996 * 110.03438 * 142.89446 * 6 5 3 38 38 H 1.08997 * 110.03413 * 240.72015 * 7 6 5 39 39 H 1.08994 * 110.06923 * 119.31147 * 7 6 5 40 40 H 1.08993 * 109.47556 * 329.99698 * 13 12 10 41 41 H 1.09009 * 109.47071 * 209.99674 * 13 12 10 42 42 H 0.97000 * 119.99989 * 179.97438 * 17 16 14 43 43 H 1.07997 * 120.04084 * 359.97434 * 23 22 12 44 44 H 1.07996 * 119.96737 * 180.20329 * 24 23 22 45 45 H 1.08997 * 109.46865 * 270.02254 * 26 25 24 46 46 H 1.09002 * 109.47424 * 30.01901 * 26 25 24 47 47 H 1.09000 * 109.47267 * 150.02027 * 26 25 24 48 48 H 1.08001 * 119.96373 * 179.97438 * 27 25 24 49 49 H 1.07996 * 120.03689 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5734 2.0184 0.7991 5 6 1.7936 2.1118 -1.3749 6 6 2.8430 3.2408 -1.4397 7 6 3.9809 2.8385 -0.4852 8 6 3.5836 1.4787 0.1257 9 1 4.0342 0.6614 -0.4373 10 6 3.9960 1.4103 1.5735 11 8 3.1564 1.2695 2.4373 12 7 5.2981 1.5057 1.9086 13 6 6.3213 1.5647 0.8619 14 6 6.5729 3.0022 0.4856 15 1 6.0250 3.7927 0.9768 16 6 7.5024 3.3080 -0.4856 17 7 7.7216 4.5624 -0.8142 18 14 8.4506 1.9407 -1.3346 19 1 9.6985 1.6609 -0.5797 20 1 7.6149 0.7140 -1.3815 21 1 8.7922 2.3600 -2.7176 22 6 5.6724 1.5486 3.2562 23 6 5.3495 2.6532 4.0333 24 6 5.7161 2.6903 5.3644 25 6 6.4129 1.6333 5.9208 26 6 6.8164 1.6795 7.3720 27 6 6.7404 0.5341 5.1483 28 6 6.3728 0.4890 3.8178 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.7859 2.5244 -1.4232 35 1 1.9515 1.3975 -2.1830 36 1 2.3990 4.1820 -1.1156 37 1 3.2248 3.3378 -2.4559 38 1 4.0893 3.5845 0.3020 39 1 4.9154 2.7405 -1.0376 40 1 5.9773 1.0148 -0.0140 41 1 7.2450 1.1189 1.2312 42 1 8.3759 4.7776 -1.4973 43 1 4.8092 3.4810 3.5983 44 1 5.4624 3.5476 5.9702 45 1 7.8009 2.1386 7.4609 46 1 6.0895 2.2673 7.9328 47 1 6.8505 0.6662 7.7722 48 1 7.2850 -0.2896 5.5857 49 1 6.6293 -0.3695 3.2149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000822837109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:42 Heat of formation + Delta-G solvation = -32.324101 kcal Electronic energy + Delta-G solvation = -27561.017667 eV Core-core repulsion = 24065.840842 eV Total energy + Delta-G solvation = -3495.176825 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.24154 -38.71767 -37.01331 -35.33224 -33.03769 -32.60705 -31.54607 -30.57533 -28.92461 -28.14420 -27.09116 -25.87370 -22.97535 -22.71757 -22.00740 -21.57710 -20.26432 -19.56197 -18.44565 -17.12935 -16.60587 -16.19028 -15.30010 -15.10752 -14.77593 -14.65591 -14.23229 -14.09968 -13.67255 -13.51957 -13.41761 -13.07770 -12.88037 -12.76032 -12.67892 -12.47849 -12.11045 -11.93282 -11.78687 -11.61259 -11.38830 -11.33621 -11.04436 -10.92925 -10.77544 -10.68306 -10.53028 -10.36528 -10.21325 -10.13577 -10.06659 -9.83500 -9.54407 -9.07532 -8.68905 -8.53217 -8.47238 -7.60751 -6.23289 -4.21128 1.68760 1.81418 3.15116 3.21973 3.24984 3.27164 3.73227 4.13950 4.23870 4.87557 5.02669 5.05743 5.09759 5.12727 5.15740 5.35165 5.39621 5.52615 5.53643 5.56236 5.70289 5.72387 5.78378 5.84836 5.88206 5.95278 5.99236 6.03525 6.04592 6.09109 6.10770 6.19598 6.25835 6.36960 6.38999 6.40402 6.47535 6.55620 6.57794 6.61628 6.69115 6.80098 6.91587 6.97576 7.02342 7.15316 7.29201 7.40080 7.60986 8.03221 8.35281 8.79353 8.90044 9.34298 10.88604 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.008806 B = 0.006207 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3178.836735 B = 4510.094123 C = 6765.909928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.072 4.072 4 H 0.084 0.916 5 C -0.118 4.118 6 C -0.126 4.126 7 C -0.101 4.101 8 C -0.101 4.101 9 H 0.091 0.909 10 C 0.530 3.470 11 O -0.554 6.554 12 N -0.557 5.557 13 C 0.209 3.791 14 C -0.529 4.529 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.887 5.887 18 Si 0.863 3.137 19 H -0.274 1.274 20 H -0.264 1.264 21 H -0.283 1.283 22 C 0.170 3.830 23 C -0.098 4.098 24 C -0.111 4.111 25 C -0.104 4.104 26 C -0.108 4.108 27 C -0.114 4.114 28 C -0.124 4.124 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.038 0.962 41 H 0.029 0.971 42 H 0.266 0.734 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.066 0.934 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.119 0.881 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.300 -7.091 4.674 10.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.090 4.090 4 H 0.102 0.898 5 C -0.156 4.156 6 C -0.164 4.164 7 C -0.139 4.139 8 C -0.122 4.122 9 H 0.110 0.890 10 C 0.320 3.680 11 O -0.432 6.432 12 N -0.285 5.285 13 C 0.089 3.911 14 C -0.567 4.567 15 H 0.100 0.900 16 C -0.125 4.125 17 N -0.524 5.524 18 Si 0.690 3.310 19 H -0.200 1.200 20 H -0.189 1.189 21 H -0.208 1.208 22 C 0.079 3.921 23 C -0.118 4.118 24 C -0.130 4.130 25 C -0.104 4.104 26 C -0.165 4.165 27 C -0.133 4.133 28 C -0.144 4.144 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.056 0.944 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.085 0.915 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.137 0.863 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.623 -7.039 4.949 10.858 hybrid contribution 0.893 -0.507 -0.679 1.231 sum -5.730 -7.546 4.270 10.393 Atomic orbital electron populations 1.21735 0.96213 1.00882 1.01606 1.21495 0.95573 0.96471 1.01618 1.22013 0.93405 0.96055 0.97565 0.89792 1.22437 0.98635 0.97757 0.96748 1.22197 0.96258 0.97879 1.00031 1.22355 0.98924 0.93707 0.98892 1.22133 0.96430 1.01175 0.92481 0.89050 1.20635 0.81221 0.74837 0.91329 1.90620 1.50629 1.50194 1.51770 1.45634 1.07246 1.71202 1.04369 1.19963 0.86449 0.98996 0.85686 1.21279 1.23146 0.90799 1.21509 0.89973 1.24778 0.96179 0.95167 0.96419 1.69871 1.34136 1.17002 1.31433 0.87050 0.81306 0.82991 0.79670 1.19971 1.18861 1.20817 1.17546 0.96848 0.93213 0.84490 1.21222 0.99629 0.97028 0.93881 1.20826 0.99277 0.98188 0.94721 1.19798 0.99624 0.94903 0.96087 1.20717 1.01362 1.02109 0.92272 1.20745 1.00987 0.98062 0.93457 1.21154 1.00328 0.97759 0.95159 0.92948 0.93386 0.92807 0.92494 0.91807 0.92200 0.91938 0.92464 0.92127 0.91142 0.88107 0.94393 0.95252 0.92373 0.86168 0.86295 0.91538 0.91910 0.91983 0.86346 0.86286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.81 37.16 0.36 -1.40 16 2 C -0.11 -1.60 5.42 -26.73 -0.14 -1.74 16 3 C -0.07 -1.12 1.88 -88.62 -0.17 -1.28 16 4 H 0.08 1.46 7.53 -51.93 -0.39 1.07 16 5 C -0.12 -1.64 5.69 -25.07 -0.14 -1.78 16 6 C -0.13 -1.99 6.80 -25.61 -0.17 -2.16 16 7 C -0.10 -1.91 4.28 -25.61 -0.11 -2.02 16 8 C -0.10 -1.81 1.78 -90.10 -0.16 -1.97 16 9 H 0.09 1.57 7.25 -51.93 -0.38 1.19 16 10 C 0.53 10.85 6.76 -10.99 -0.07 10.77 16 11 O -0.55 -12.31 15.35 5.55 0.09 -12.22 16 12 N -0.56 -11.64 2.51 -114.74 -0.29 -11.93 16 13 C 0.21 4.56 3.72 -5.19 -0.02 4.54 16 14 C -0.53 -13.18 6.48 -34.44 -0.22 -13.40 16 15 H 0.08 2.29 7.21 -52.49 -0.38 1.92 16 16 C 0.08 2.02 5.31 -17.82 -0.09 1.92 16 17 N -0.89 -24.73 13.96 55.43 0.77 -23.96 16 18 Si 0.86 19.30 27.47 -169.99 -4.67 14.63 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C 0.17 3.43 4.74 -83.70 -0.40 3.03 16 23 C -0.10 -1.90 9.57 -39.39 -0.38 -2.28 16 24 C -0.11 -1.82 9.69 -39.61 -0.38 -2.20 16 25 C -0.10 -1.54 5.88 -104.59 -0.62 -2.16 16 26 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 27 C -0.11 -1.74 9.69 -39.61 -0.38 -2.13 16 28 C -0.12 -2.21 9.68 -39.39 -0.38 -2.59 16 29 H 0.05 0.57 7.65 -51.93 -0.40 0.18 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.73 7.99 -51.93 -0.41 0.32 16 33 H 0.06 1.00 7.96 -51.93 -0.41 0.58 16 34 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 35 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.51 6.73 -51.93 -0.35 1.16 16 39 H 0.10 2.13 5.92 -51.93 -0.31 1.82 16 40 H 0.04 0.80 5.33 -51.93 -0.28 0.52 16 41 H 0.03 0.64 7.28 -51.92 -0.38 0.27 16 42 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 44 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 47 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 48 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 49 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 381.55 15.07 5.75 5.75 Total: -1.00 -28.37 381.55 -9.80 -38.17 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -8.33 Total: 7.23 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -3.12 Total: -17.67 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.49 Total: -35.88 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.09 Total: -12.22 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.37 -9.80 -38.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000822837109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.841 kcal (2) G-P(sol) polarization free energy of solvation -28.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds