Wall clock time and date at job start Tue Mar 31 2020 11:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99820 * 2 1 4 4 N 1.46502 * 109.46988 * 123.95701 * 3 2 1 5 5 C 1.46503 * 120.00138 * 274.72581 * 4 3 2 6 6 C 1.50692 * 109.46981 * 270.00003 * 5 4 3 7 7 H 1.07997 * 120.00144 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99967 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00023 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00106 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46917 * 90.00213 * 10 8 6 12 12 H 1.48503 * 109.47326 * 210.00395 * 10 8 6 13 13 H 1.48496 * 109.46958 * 330.00634 * 10 8 6 14 14 C 1.34781 * 119.99845 * 94.72090 * 4 3 2 15 15 O 1.21286 * 119.99716 * 175.04281 * 14 4 3 16 16 C 1.50689 * 120.00246 * 355.04971 * 14 4 3 17 17 H 1.09002 * 109.47231 * 334.95333 * 16 14 4 18 18 C 1.53007 * 109.47159 * 214.95451 * 16 14 4 19 19 C 1.52998 * 109.47025 * 64.33325 * 18 16 14 20 20 C 1.53001 * 109.47497 * 94.95553 * 16 14 4 21 21 C 1.50702 * 109.47122 * 185.00294 * 20 16 14 22 22 C 1.38261 * 120.00189 * 89.99873 * 21 20 16 23 23 C 1.38208 * 119.99694 * 179.72167 * 22 21 20 24 24 C 1.38261 * 120.00554 * 0.25225 * 23 22 21 25 25 C 1.38215 * 119.99209 * 0.02562 * 24 23 22 26 26 C 1.50704 * 119.99618 * 179.97438 * 25 24 23 27 27 C 1.38220 * 119.99716 * 270.23023 * 21 20 16 28 28 H 1.08001 * 119.99605 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99714 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00152 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.47399 * 3.96074 * 3 2 1 32 32 H 1.08996 * 109.47017 * 243.95250 * 3 2 1 33 33 H 1.09006 * 109.46675 * 29.99782 * 5 4 3 34 34 H 1.09003 * 109.47036 * 149.99721 * 5 4 3 35 35 H 0.97000 * 120.00634 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46750 * 184.33024 * 18 16 14 37 37 H 1.08996 * 109.47068 * 304.33427 * 18 16 14 38 38 H 1.09002 * 109.47145 * 64.87475 * 19 18 16 39 39 H 1.08995 * 109.47009 * 184.87868 * 19 18 16 40 40 H 1.08998 * 109.47181 * 304.88129 * 19 18 16 41 41 H 1.08994 * 109.47066 * 64.99674 * 20 16 14 42 42 H 1.09005 * 109.46713 * 304.99704 * 20 16 14 43 43 H 1.07999 * 119.99681 * 359.97438 * 22 21 20 44 44 H 1.08004 * 120.00064 * 180.27930 * 23 22 21 45 45 H 1.07990 * 120.00293 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47245 * 89.99758 * 26 25 24 47 47 H 1.08999 * 109.47071 * 210.00497 * 26 25 24 48 48 H 1.09001 * 109.46929 * 329.99976 * 26 25 24 49 49 H 1.07996 * 119.99803 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9758 1.3423 1.1457 5 6 2.4913 1.7902 2.4537 6 6 2.6802 3.2802 2.5761 7 1 3.1179 3.8378 1.7613 8 6 2.2944 3.9317 3.7284 9 7 1.7619 3.2527 4.7208 10 14 2.5292 5.7787 3.8804 11 1 1.3178 6.4747 3.3774 12 1 2.7486 6.1342 5.3054 13 1 3.7080 6.1953 3.0791 14 6 4.2609 0.9644 0.9963 15 8 5.0382 1.0798 1.9202 16 6 4.7320 0.3986 -0.3185 17 1 3.8865 -0.0387 -0.8496 18 6 5.7859 -0.6803 -0.0611 19 6 5.1467 -1.8482 0.6927 20 6 5.3431 1.5168 -1.1653 21 6 5.7020 0.9775 -2.5260 22 6 4.7771 1.0207 -3.5528 23 6 5.1084 0.5313 -4.8021 24 6 6.3628 -0.0061 -5.0239 25 6 7.2854 -0.0545 -3.9958 26 6 8.6525 -0.6408 -4.2373 27 6 6.9543 0.4354 -2.7461 28 1 -0.5399 0.9354 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3574 2.1324 0.0710 32 1 2.6360 1.3942 -0.9233 33 1 1.4327 1.5489 2.5511 34 1 3.0526 1.2868 3.2409 35 1 1.4908 3.7109 5.5316 36 1 6.1822 -1.0353 -1.0125 37 1 6.5958 -0.2619 0.5365 38 1 4.3954 -2.3212 0.0602 39 1 5.9145 -2.5770 0.9520 40 1 4.6745 -1.4783 1.6028 41 1 6.2407 1.8942 -0.6756 42 1 4.6210 2.3261 -1.2741 43 1 3.7973 1.4405 -3.3795 44 1 4.3875 0.5692 -5.6055 45 1 6.6217 -0.3881 -6.0002 46 1 9.3322 0.1454 -4.5660 47 1 9.0269 -1.0821 -3.3136 48 1 8.5872 -1.4099 -5.0069 49 1 7.6752 0.3979 -1.9429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823090352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:50 Heat of formation + Delta-G solvation = -14.274923 kcal Electronic energy + Delta-G solvation = -26840.161682 eV Core-core repulsion = 23345.767528 eV Total energy + Delta-G solvation = -3494.394154 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.03844 -39.03246 -35.82546 -35.19002 -33.17007 -32.90572 -32.02285 -31.64830 -29.19308 -27.48906 -27.00213 -25.49086 -24.51184 -23.18990 -22.02705 -21.43447 -20.32040 -19.64059 -18.16248 -16.85769 -16.49764 -16.32651 -15.62360 -15.40816 -15.05561 -14.60902 -14.43810 -14.15333 -13.94896 -13.76337 -13.50640 -13.29155 -13.10760 -13.00809 -12.59909 -12.44151 -12.31410 -12.08385 -12.00803 -11.66947 -11.58073 -11.30273 -11.10594 -11.08969 -11.01583 -10.88439 -10.79170 -10.65676 -10.57956 -10.44136 -10.15751 -9.61728 -9.15682 -8.84592 -8.79626 -8.55990 -8.41044 -7.64408 -6.01686 -4.06016 1.28125 1.32622 2.47962 3.31105 3.37533 3.39835 3.45000 3.71568 4.04680 4.46537 4.68112 4.69365 4.79788 4.97028 5.03462 5.11617 5.20406 5.24517 5.29582 5.32561 5.39045 5.41244 5.42282 5.48688 5.53363 5.62229 5.66238 5.71448 5.75057 5.82044 5.94828 6.00340 6.03654 6.10413 6.17092 6.21344 6.25234 6.40662 6.45983 6.49592 6.51710 6.63710 6.82554 6.94825 6.96257 7.12963 7.47057 7.59258 7.94931 8.26765 8.46147 8.93647 9.14598 9.58884 11.06414 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.003566 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.873322 B = 7850.414971 C = 8184.770794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.167 4.167 3 C 0.135 3.865 4 N -0.594 5.594 5 C 0.248 3.752 6 C -0.523 4.523 7 H 0.057 0.943 8 C 0.061 3.939 9 N -0.895 5.895 10 Si 0.896 3.104 11 H -0.281 1.281 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.512 3.488 15 O -0.536 6.536 16 C -0.103 4.103 17 H 0.087 0.913 18 C -0.108 4.108 19 C -0.152 4.152 20 C -0.073 4.073 21 C -0.065 4.065 22 C -0.122 4.122 23 C -0.115 4.115 24 C -0.130 4.130 25 C -0.088 4.088 26 C -0.114 4.114 27 C -0.114 4.114 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.041 0.959 35 H 0.263 0.737 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.059 0.941 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.122 0.878 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.869 -9.179 -19.581 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.187 4.187 3 C 0.011 3.989 4 N -0.325 5.325 5 C 0.129 3.871 6 C -0.562 4.562 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.534 5.534 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.199 1.199 14 C 0.299 3.701 15 O -0.413 6.413 16 C -0.125 4.125 17 H 0.105 0.895 18 C -0.146 4.146 19 C -0.209 4.209 20 C -0.111 4.111 21 C -0.065 4.065 22 C -0.140 4.140 23 C -0.133 4.133 24 C -0.148 4.148 25 C -0.088 4.088 26 C -0.171 4.171 27 C -0.132 4.132 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.140 0.860 44 H 0.137 0.863 45 H 0.135 0.865 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.208 -9.075 -18.860 21.831 hybrid contribution -0.172 1.008 0.146 1.033 sum 6.037 -8.067 -18.714 21.254 Atomic orbital electron populations 1.23813 0.95861 1.01709 1.00645 1.23426 0.96368 0.99048 0.99812 1.20603 0.93392 0.95259 0.89615 1.48247 1.08587 1.63664 1.11960 1.19236 0.94776 0.94774 0.78286 1.21426 1.40712 0.92707 1.01354 0.92501 1.24929 0.95162 0.98516 0.95511 1.69932 1.42011 1.35788 1.05701 0.86525 0.78424 0.85301 0.77350 1.20690 1.21118 1.19888 1.20250 0.82403 0.78356 0.89121 1.90662 1.53291 1.54948 1.42420 1.21420 0.99581 0.96603 0.94901 0.89496 1.21474 0.97922 0.94747 1.00464 1.21771 1.00468 0.97863 1.00819 1.20548 1.02221 0.97041 0.91243 1.19864 0.93817 0.97615 0.95217 1.21072 0.99390 1.00658 0.92882 1.21090 0.96548 0.98671 0.97008 1.20970 0.93889 1.01352 0.98547 1.19894 0.96198 0.99029 0.93667 1.20788 0.93469 1.00415 1.02409 1.20990 0.96477 0.99234 0.96520 0.88312 0.88842 0.87814 0.89707 0.90690 0.95075 0.94145 0.92782 0.91402 0.90828 0.93316 0.92882 0.92158 0.90030 0.90376 0.86031 0.86254 0.86511 0.91310 0.91502 0.91742 0.85951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.42 14.32 29.01 0.42 -2.00 16 2 C -0.17 -2.42 9.47 -36.02 -0.34 -2.76 16 3 C 0.14 2.21 5.43 -5.19 -0.03 2.18 16 4 N -0.59 -12.48 2.44 -176.43 -0.43 -12.91 16 5 C 0.25 6.52 5.14 -5.20 -0.03 6.49 16 6 C -0.52 -14.87 9.39 -34.44 -0.32 -15.19 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 9 N -0.90 -26.79 13.29 55.43 0.74 -26.06 16 10 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 14 C 0.51 10.49 5.61 -10.99 -0.06 10.42 16 15 O -0.54 -13.39 15.60 5.55 0.09 -13.30 16 16 C -0.10 -1.56 1.36 -91.77 -0.12 -1.68 16 17 H 0.09 1.19 6.16 -51.93 -0.32 0.87 16 18 C -0.11 -1.52 4.85 -26.73 -0.13 -1.65 16 19 C -0.15 -2.13 9.79 37.16 0.36 -1.76 16 20 C -0.07 -1.00 4.64 -27.88 -0.13 -1.13 16 21 C -0.07 -0.78 4.72 -104.62 -0.49 -1.27 16 22 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 24 C -0.13 -1.24 9.70 -39.58 -0.38 -1.62 16 25 C -0.09 -0.88 5.88 -104.62 -0.62 -1.49 16 26 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 27 C -0.11 -1.28 7.53 -39.58 -0.30 -1.58 16 28 H 0.10 1.29 7.84 -52.49 -0.41 0.88 16 29 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.10 1.43 8.03 -52.49 -0.42 1.01 16 31 H 0.08 1.44 7.75 -51.93 -0.40 1.04 16 32 H 0.07 1.03 5.75 -51.93 -0.30 0.73 16 33 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 36 H 0.07 0.83 5.95 -51.93 -0.31 0.52 16 37 H 0.07 1.14 7.70 -51.93 -0.40 0.74 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.06 1.02 7.05 -51.93 -0.37 0.65 16 41 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 42 H 0.08 1.09 7.57 -51.93 -0.39 0.70 16 43 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 48 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 49 H 0.12 1.30 7.98 -52.49 -0.42 0.88 16 LS Contribution 399.61 15.07 6.02 6.02 Total: -1.00 -32.74 399.61 -9.61 -42.35 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.31 Total: 2.05 kcal Atomic # 6 Polarization: -12.46 SS G_CDS: -2.70 Total: -15.15 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.31 Total: -38.97 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.74 -9.61 -42.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.077 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds