Wall clock time and date at job start Tue Mar 31 2020 11:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50707 * 119.99820 * 2 1 4 4 N 1.46502 * 109.46988 * 123.95701 * 3 2 1 5 5 C 1.46503 * 120.00138 * 274.72581 * 4 3 2 6 6 C 1.50692 * 109.46981 * 270.00003 * 5 4 3 7 7 H 1.07997 * 120.00144 * 359.97438 * 6 5 4 8 8 C 1.37878 * 119.99967 * 179.97438 * 6 5 4 9 9 N 1.31509 * 120.00023 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00106 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46917 * 90.00213 * 10 8 6 12 12 H 1.48503 * 109.47326 * 210.00395 * 10 8 6 13 13 H 1.48496 * 109.46958 * 330.00634 * 10 8 6 14 14 C 1.34781 * 119.99845 * 94.72090 * 4 3 2 15 15 O 1.21286 * 119.99716 * 175.04281 * 14 4 3 16 16 C 1.50689 * 120.00246 * 355.04971 * 14 4 3 17 17 H 1.09002 * 109.47231 * 334.95333 * 16 14 4 18 18 C 1.53007 * 109.47159 * 214.95451 * 16 14 4 19 19 C 1.52998 * 109.47025 * 64.33325 * 18 16 14 20 20 C 1.53001 * 109.47497 * 94.95553 * 16 14 4 21 21 C 1.50702 * 109.47122 * 185.00294 * 20 16 14 22 22 C 1.38261 * 120.00189 * 89.99873 * 21 20 16 23 23 C 1.38208 * 119.99694 * 179.72167 * 22 21 20 24 24 C 1.38261 * 120.00554 * 0.25225 * 23 22 21 25 25 C 1.38215 * 119.99209 * 0.02562 * 24 23 22 26 26 C 1.50704 * 119.99618 * 179.97438 * 25 24 23 27 27 C 1.38220 * 119.99716 * 270.23023 * 21 20 16 28 28 H 1.08001 * 119.99605 * 359.97438 * 1 2 3 29 29 H 1.07996 * 119.99714 * 179.97438 * 1 2 3 30 30 H 1.07996 * 120.00152 * 180.02562 * 2 1 3 31 31 H 1.08991 * 109.47399 * 3.96074 * 3 2 1 32 32 H 1.08996 * 109.47017 * 243.95250 * 3 2 1 33 33 H 1.09006 * 109.46675 * 29.99782 * 5 4 3 34 34 H 1.09003 * 109.47036 * 149.99721 * 5 4 3 35 35 H 0.97000 * 120.00634 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.46750 * 184.33024 * 18 16 14 37 37 H 1.08996 * 109.47068 * 304.33427 * 18 16 14 38 38 H 1.09002 * 109.47145 * 64.87475 * 19 18 16 39 39 H 1.08995 * 109.47009 * 184.87868 * 19 18 16 40 40 H 1.08998 * 109.47181 * 304.88129 * 19 18 16 41 41 H 1.08994 * 109.47066 * 64.99674 * 20 16 14 42 42 H 1.09005 * 109.46713 * 304.99704 * 20 16 14 43 43 H 1.07999 * 119.99681 * 359.97438 * 22 21 20 44 44 H 1.08004 * 120.00064 * 180.27930 * 23 22 21 45 45 H 1.07990 * 120.00293 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47245 * 89.99758 * 26 25 24 47 47 H 1.08999 * 109.47071 * 210.00497 * 26 25 24 48 48 H 1.09001 * 109.46929 * 329.99976 * 26 25 24 49 49 H 1.07996 * 119.99803 * 0.02562 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9758 1.3423 1.1457 5 6 2.4913 1.7902 2.4537 6 6 2.6802 3.2802 2.5761 7 1 3.1179 3.8378 1.7613 8 6 2.2944 3.9317 3.7284 9 7 1.7619 3.2527 4.7208 10 14 2.5292 5.7787 3.8804 11 1 1.3178 6.4747 3.3774 12 1 2.7486 6.1342 5.3054 13 1 3.7080 6.1953 3.0791 14 6 4.2609 0.9644 0.9963 15 8 5.0382 1.0798 1.9202 16 6 4.7320 0.3986 -0.3185 17 1 3.8865 -0.0387 -0.8496 18 6 5.7859 -0.6803 -0.0611 19 6 5.1467 -1.8482 0.6927 20 6 5.3431 1.5168 -1.1653 21 6 5.7020 0.9775 -2.5260 22 6 4.7771 1.0207 -3.5528 23 6 5.1084 0.5313 -4.8021 24 6 6.3628 -0.0061 -5.0239 25 6 7.2854 -0.0545 -3.9958 26 6 8.6525 -0.6408 -4.2373 27 6 6.9543 0.4354 -2.7461 28 1 -0.5399 0.9354 0.0004 29 1 -0.5399 -0.9353 -0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3574 2.1324 0.0710 32 1 2.6360 1.3942 -0.9233 33 1 1.4327 1.5489 2.5511 34 1 3.0526 1.2868 3.2409 35 1 1.4908 3.7109 5.5316 36 1 6.1822 -1.0353 -1.0125 37 1 6.5958 -0.2619 0.5365 38 1 4.3954 -2.3212 0.0602 39 1 5.9145 -2.5770 0.9520 40 1 4.6745 -1.4783 1.6028 41 1 6.2407 1.8942 -0.6756 42 1 4.6210 2.3261 -1.2741 43 1 3.7973 1.4405 -3.3795 44 1 4.3875 0.5692 -5.6055 45 1 6.6217 -0.3881 -6.0002 46 1 9.3322 0.1454 -4.5660 47 1 9.0269 -1.0821 -3.3136 48 1 8.5872 -1.4099 -5.0069 49 1 7.6752 0.3979 -1.9429 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823090352.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:49 Heat of formation + Delta-G solvation = -30.467621 kcal Electronic energy + Delta-G solvation = -26840.863850 eV Core-core repulsion = 23345.767528 eV Total energy + Delta-G solvation = -3495.096322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.33113 -40.14397 -37.33827 -36.50360 -35.04434 -33.80212 -33.63977 -32.53892 -30.51501 -29.20118 -27.69929 -26.92642 -25.89904 -24.81570 -22.93685 -22.71827 -21.35918 -20.76470 -19.68599 -18.65420 -18.19947 -17.25744 -17.23534 -16.38002 -16.28090 -16.20301 -15.82194 -15.32478 -15.16415 -14.91182 -14.59476 -14.41176 -14.22135 -14.14955 -13.92775 -13.73305 -13.58898 -13.33243 -13.10117 -12.98161 -12.88513 -12.84143 -12.63880 -12.59170 -12.26663 -12.24855 -12.09800 -11.89464 -11.84037 -11.75807 -11.68008 -11.60986 -10.64853 -10.45714 -10.32438 -9.60651 -9.46371 -9.39629 -8.22549 -6.37062 0.48455 0.55474 1.32310 1.35005 1.37942 1.48304 1.84349 2.33863 2.50346 2.90961 3.06799 3.53713 3.72160 3.94882 4.02053 4.06466 4.10471 4.16030 4.20150 4.31708 4.35007 4.41610 4.43409 4.52630 4.59240 4.63762 4.70988 4.82351 4.83274 4.87856 4.94114 4.99059 5.02153 5.05641 5.07394 5.08424 5.21546 5.25551 5.30205 5.33446 5.38344 5.53122 5.65230 5.71106 5.75327 5.76505 5.79962 5.96559 6.06838 6.20498 6.69838 6.79764 7.28508 7.50293 8.84588 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014349 B = 0.003566 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1950.873322 B = 7850.414971 C = 8184.770794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.184 4.184 3 C 0.132 3.868 4 N -0.599 5.599 5 C 0.267 3.733 6 C -0.540 4.540 7 H 0.052 0.948 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.281 1.281 13 H -0.274 1.274 14 C 0.507 3.493 15 O -0.592 6.592 16 C -0.087 4.087 17 H 0.108 0.892 18 C -0.103 4.103 19 C -0.150 4.150 20 C -0.066 4.066 21 C -0.077 4.077 22 C -0.131 4.131 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.093 4.093 26 C -0.114 4.114 27 C -0.128 4.128 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.113 0.887 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.020 0.980 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.095 0.905 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.021 0.979 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.130 0.870 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 -9.556 -22.847 25.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.203 4.203 3 C 0.010 3.990 4 N -0.329 5.329 5 C 0.146 3.854 6 C -0.579 4.579 7 H 0.070 0.930 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.206 1.206 13 H -0.198 1.198 14 C 0.296 3.704 15 O -0.473 6.473 16 C -0.108 4.108 17 H 0.126 0.874 18 C -0.141 4.141 19 C -0.207 4.207 20 C -0.104 4.104 21 C -0.077 4.077 22 C -0.149 4.149 23 C -0.134 4.134 24 C -0.148 4.148 25 C -0.093 4.093 26 C -0.170 4.170 27 C -0.146 4.146 28 H 0.116 0.884 29 H 0.135 0.865 30 H 0.131 0.869 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.038 0.962 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.113 0.887 37 H 0.071 0.929 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.148 0.852 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.097 0.903 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.992 -9.465 -22.175 24.844 hybrid contribution -0.129 1.082 1.128 1.568 sum 5.863 -8.383 -21.047 23.402 Atomic orbital electron populations 1.24045 0.95503 1.02855 0.98181 1.23318 0.96808 0.98223 1.01973 1.20834 0.93036 0.96334 0.88768 1.48244 1.09787 1.63366 1.11457 1.18640 0.93188 0.93557 0.80054 1.21687 1.40835 0.93761 1.01571 0.92972 1.25847 0.94615 1.03626 0.95026 1.70051 1.42659 1.37861 1.06249 0.85442 0.78872 0.79241 0.77427 1.18708 1.20619 1.19845 1.21237 0.81520 0.77178 0.90490 1.90623 1.54704 1.57164 1.44789 1.21364 1.00553 0.97137 0.91758 0.87371 1.21461 0.96946 0.94320 1.01344 1.21760 1.01303 0.98149 0.99470 1.20429 1.01199 0.96416 0.92350 1.19658 0.94745 0.99044 0.94219 1.21237 0.99608 1.00904 0.93147 1.21391 0.97193 0.97794 0.97041 1.21324 0.93588 1.00516 0.99400 1.20183 0.97409 0.98536 0.93193 1.20834 0.92242 1.00928 1.03042 1.21079 0.96285 0.99841 0.97354 0.88361 0.86500 0.86883 0.90625 0.87813 0.96215 0.98921 0.92442 0.88712 0.92941 0.91169 0.91288 0.95936 0.91738 0.90801 0.85171 0.83974 0.84182 0.90650 0.91382 0.90254 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.18 -5.11 9.47 25.65 0.24 -4.87 16 3 C 0.13 4.30 5.43 85.64 0.47 4.76 16 4 N -0.60 -26.15 2.44 -830.50 -2.03 -28.18 16 5 C 0.27 14.81 5.14 85.63 0.44 15.25 16 6 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 7 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.45 5.46 84.66 0.46 0.91 16 9 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 10 Si 0.97 45.75 29.54 68.60 2.03 47.78 16 11 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 C 0.51 21.68 5.61 87.65 0.49 22.17 16 15 O -0.59 -31.61 15.60 -3.05 -0.05 -31.65 16 16 C -0.09 -2.62 1.36 -11.54 -0.02 -2.63 16 17 H 0.11 2.79 6.16 -2.39 -0.01 2.78 16 18 C -0.10 -2.88 4.85 30.60 0.15 -2.73 16 19 C -0.15 -4.15 9.79 71.98 0.70 -3.44 16 20 C -0.07 -1.82 4.64 29.85 0.14 -1.68 16 21 C -0.08 -1.72 4.72 -19.86 -0.09 -1.82 16 22 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 23 C -0.12 -1.89 10.05 22.27 0.22 -1.67 16 24 C -0.13 -2.05 9.70 22.27 0.22 -1.83 16 25 C -0.09 -1.63 5.88 -19.87 -0.12 -1.75 16 26 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 27 C -0.13 -2.67 7.53 22.27 0.17 -2.51 16 28 H 0.10 2.44 7.84 -2.91 -0.02 2.42 16 29 H 0.12 2.36 8.06 -2.91 -0.02 2.33 16 30 H 0.11 2.94 8.03 -2.91 -0.02 2.91 16 31 H 0.08 2.58 7.75 -2.39 -0.02 2.56 16 32 H 0.10 2.71 5.75 -2.39 -0.01 2.70 16 33 H 0.02 1.12 8.07 -2.38 -0.02 1.10 16 34 H -0.01 -0.47 7.50 -2.39 -0.02 -0.49 16 35 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.09 2.17 5.95 -2.39 -0.01 2.15 16 37 H 0.05 1.69 7.70 -2.39 -0.02 1.67 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.02 0.77 7.05 -2.39 -0.02 0.76 16 41 H 0.06 1.97 8.09 -2.39 -0.02 1.95 16 42 H 0.07 2.06 7.57 -2.38 -0.02 2.04 16 43 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.14 1.52 8.06 -2.92 -0.02 1.49 16 46 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 47 H 0.07 0.84 8.09 -2.39 -0.02 0.82 16 48 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 49 H 0.12 2.48 7.98 -2.91 -0.02 2.46 16 Total: -1.00 -74.76 399.61 6.75 -68.01 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.90 Total: 20.58 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 5.62 Total: -19.65 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -1.74 Total: -85.06 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.05 Total: -31.65 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.76 6.75 -68.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823090352.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.545 kcal (2) G-P(sol) polarization free energy of solvation -74.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds