Wall clock time and date at job start Tue Mar 31 2020 11:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47313 * 2 1 4 4 H 1.09011 * 109.47532 * 54.99545 * 3 2 1 5 5 N 1.46500 * 109.47180 * 295.00205 * 3 2 1 6 6 C 1.34778 * 120.00364 * 107.09367 * 5 3 2 7 7 O 1.21276 * 120.00113 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99769 * 179.97438 * 6 5 3 9 9 C 1.50710 * 109.46758 * 180.02562 * 8 6 5 10 10 C 1.37633 * 120.12520 * 264.72859 * 9 8 6 11 11 C 1.38618 * 120.24531 * 179.72102 * 10 9 8 12 12 C 1.38654 * 120.49900 * 0.56028 * 11 10 9 13 13 C 1.37597 * 120.25082 * 359.72100 * 12 11 10 14 14 C 1.40688 * 120.12367 * 85.00537 * 9 8 6 15 15 C 1.41398 * 120.24752 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00064 * 334.80007 * 15 14 9 17 17 C 1.39948 * 119.99852 * 154.79576 * 15 14 9 18 18 N 1.30822 * 120.00282 * 346.76620 * 17 15 14 19 19 Si 1.86805 * 119.99773 * 166.76263 * 17 15 14 20 20 H 1.48502 * 109.46935 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46944 * 120.00431 * 19 17 15 22 22 H 1.48497 * 109.47087 * 240.00284 * 19 17 15 23 23 C 1.52995 * 109.47486 * 174.99836 * 3 2 1 24 24 H 1.09002 * 115.54988 * 39.59899 * 23 3 2 25 25 C 1.53001 * 117.50177 * 185.26531 * 23 3 2 26 26 C 1.53001 * 117.52368 * 253.89887 * 23 3 2 27 27 C 1.52997 * 117.50208 * 145.02696 * 26 23 3 28 28 C 1.53002 * 117.49321 * 0.02562 * 26 23 3 29 29 H 1.09002 * 109.46662 * 300.00077 * 1 2 3 30 30 H 1.08994 * 109.47055 * 59.99961 * 1 2 3 31 31 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47360 * 239.99804 * 2 1 3 33 33 H 1.09008 * 109.47071 * 119.99504 * 2 1 3 34 34 H 0.97006 * 119.99793 * 287.10186 * 5 3 2 35 35 H 1.08994 * 109.47884 * 300.00521 * 8 6 5 36 36 H 1.09003 * 109.47168 * 60.00723 * 8 6 5 37 37 H 1.07999 * 119.88295 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.75313 * 180.30035 * 11 10 9 39 39 H 1.08002 * 119.87680 * 179.74632 * 12 11 10 40 40 H 1.07996 * 120.13063 * 180.02562 * 13 12 11 41 41 H 0.96994 * 119.99743 * 179.97438 * 18 17 15 42 42 H 1.09005 * 117.50357 * 215.00098 * 25 23 3 43 43 H 1.08998 * 117.49581 * 0.03200 * 25 23 3 44 44 H 1.08998 * 109.47054 * 180.02562 * 27 26 23 45 45 H 1.09000 * 109.46903 * 300.01348 * 27 26 23 46 46 H 1.08996 * 109.47269 * 60.01168 * 27 26 23 47 47 H 1.09002 * 109.46998 * 299.98312 * 28 26 23 48 48 H 1.09001 * 109.47560 * 59.98567 * 28 26 23 49 49 H 1.09003 * 109.46825 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.6743 3.0247 -1.2525 7 8 0.1153 3.3172 -0.2168 8 6 0.2762 3.6988 -2.5401 9 6 -0.8301 4.6858 -2.2692 10 6 -2.1441 4.3164 -2.4463 11 6 -3.1638 5.2204 -2.1923 12 6 -2.8732 6.5083 -1.7688 13 6 -1.5666 6.9011 -1.5905 14 6 -0.5233 5.9899 -1.8398 15 6 0.8231 6.3822 -1.6594 16 1 1.5782 5.6396 -1.4476 17 6 1.1773 7.7327 -1.7555 18 7 0.3340 8.5958 -2.2607 19 14 2.8544 8.3029 -1.1623 20 1 3.6154 7.1405 -0.6379 21 1 3.5989 8.9119 -2.2936 22 1 2.6821 9.3094 -0.0841 23 6 3.5648 1.4443 0.1258 24 1 4.0840 0.6692 -0.4380 25 6 4.2603 2.7996 0.2686 26 6 4.1628 1.8592 1.4716 27 6 5.4435 1.1544 1.9230 28 6 3.1899 2.2401 2.5894 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.0998 1.8637 -2.0802 35 1 1.1361 4.2229 -2.9570 36 1 -0.0716 2.9488 -3.2505 37 1 -2.3818 3.3173 -2.7806 38 1 -4.1923 4.9206 -2.3293 39 1 -3.6754 7.2056 -1.5777 40 1 -1.3425 7.9046 -1.2601 41 1 0.5794 9.5319 -2.3270 42 1 5.2370 2.9162 -0.2011 43 1 3.6314 3.6899 0.2735 44 1 5.7523 1.5474 2.8917 45 1 5.2584 0.0836 2.0078 46 1 6.2321 1.3300 1.1914 47 1 2.5836 3.0878 2.2702 48 1 2.5414 1.3925 2.8111 49 1 3.7517 2.5111 3.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841362632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:29 Heat of formation + Delta-G solvation = -20.196404 kcal Electronic energy + Delta-G solvation = -27141.741448 eV Core-core repulsion = 23647.090519 eV Total energy + Delta-G solvation = -3494.650929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.81649 -38.39407 -37.18417 -34.91473 -33.57501 -32.18185 -31.32475 -29.48025 -29.34083 -27.76590 -27.07637 -25.89360 -24.83668 -21.70659 -21.12086 -20.84432 -20.22016 -19.37630 -18.63869 -17.11891 -16.29796 -16.05576 -15.32223 -15.17620 -14.56152 -14.52348 -14.33138 -13.87042 -13.72556 -13.48658 -13.22274 -13.02395 -12.88526 -12.59046 -12.54928 -12.18207 -12.08274 -11.81841 -11.69273 -11.51614 -11.34501 -11.27418 -11.10573 -10.97889 -10.93932 -10.91320 -10.65390 -10.55001 -10.33235 -9.95348 -9.66678 -9.45360 -9.30024 -9.14716 -8.98777 -8.56092 -7.24777 -7.23313 -6.66145 -4.29888 2.81442 3.02272 3.09526 3.14327 3.30588 3.40761 3.50666 3.96762 4.03046 4.49233 4.72070 4.78511 4.82992 5.04220 5.17973 5.20542 5.28432 5.46612 5.54536 5.59519 5.62605 5.80919 5.82991 5.87208 5.91663 5.92362 5.94501 5.99910 6.02966 6.07599 6.09429 6.14426 6.24441 6.33622 6.34966 6.40448 6.47150 6.50138 6.56769 6.85926 6.97631 7.13593 7.36993 7.49371 7.70108 7.96697 8.06609 8.15359 8.19664 8.37271 8.71469 8.97319 8.98944 9.07556 10.26045 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.005041 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.981082 B = 5552.610054 C = 7456.963364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.164 3.836 4 H 0.103 0.897 5 N -0.735 5.735 6 C 0.517 3.483 7 O -0.522 6.522 8 C -0.072 4.072 9 C -0.177 4.177 10 C -0.083 4.083 11 C -0.238 4.238 12 C -0.109 4.109 13 C -0.159 4.159 14 C 0.126 3.874 15 C -0.451 4.451 16 H 0.074 0.926 17 C 0.075 3.925 18 N -0.799 5.799 19 Si 0.902 3.098 20 H -0.261 1.261 21 H -0.275 1.275 22 H -0.273 1.273 23 C -0.158 4.158 24 H 0.102 0.898 25 C -0.162 4.162 26 C -0.122 4.122 27 C -0.112 4.112 28 C -0.120 4.120 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.047 0.953 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.394 0.606 35 H 0.094 0.906 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.122 0.878 41 H 0.278 0.722 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 -13.393 3.224 16.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C 0.059 3.941 4 H 0.121 0.879 5 N -0.388 5.388 6 C 0.305 3.695 7 O -0.395 6.395 8 C -0.112 4.112 9 C -0.179 4.179 10 C -0.102 4.102 11 C -0.258 4.258 12 C -0.128 4.128 13 C -0.179 4.179 14 C 0.124 3.876 15 C -0.482 4.482 16 H 0.092 0.908 17 C -0.142 4.142 18 N -0.425 5.425 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.198 1.198 23 C -0.177 4.177 24 H 0.120 0.880 25 C -0.199 4.199 26 C -0.122 4.122 27 C -0.170 4.170 28 C -0.177 4.177 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.226 0.774 35 H 0.113 0.887 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.099 -12.903 3.929 15.733 hybrid contribution 0.997 0.237 -0.290 1.065 sum 9.096 -12.667 3.639 16.013 Atomic orbital electron populations 1.21693 0.95315 1.00688 1.02762 1.21844 0.96564 0.96366 1.01697 1.20556 0.90940 0.93117 0.89466 0.87866 1.46101 1.39694 1.42851 1.10157 1.21152 0.78350 0.77857 0.92129 1.90661 1.52927 1.61967 1.33984 1.20278 1.00024 0.97162 0.93762 1.19047 0.91686 0.95754 1.11403 1.20284 0.92862 0.96692 1.00314 1.20307 0.96444 0.95350 1.13687 1.20687 0.96186 0.95123 1.00779 1.21413 0.91056 1.00888 1.04505 1.17350 0.93289 0.89856 0.87102 1.19508 0.94052 0.92199 1.42394 0.90816 1.25878 0.98821 0.96796 0.92694 1.69813 1.35875 1.04020 1.32788 0.86351 0.82239 0.79479 0.79208 1.18491 1.20074 1.19802 1.22755 0.95162 0.99185 1.00578 0.87997 1.23211 1.01740 0.94138 1.00792 1.21557 0.97971 1.02988 0.89700 1.21337 0.94767 0.99716 1.01132 1.21402 0.98009 1.01648 0.96604 0.92513 0.92563 0.93350 0.92186 0.91507 0.77358 0.88745 0.90836 0.89882 0.89778 0.89673 0.86053 0.91140 0.89050 0.88296 0.92189 0.92407 0.92639 0.91654 0.92208 0.92292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.70 37.16 0.36 -1.54 16 2 C -0.13 -1.43 5.61 -26.73 -0.15 -1.58 16 3 C 0.16 2.17 2.24 -67.94 -0.15 2.02 16 4 H 0.10 1.67 4.94 -51.92 -0.26 1.42 16 5 N -0.74 -10.59 4.45 -53.81 -0.24 -10.83 16 6 C 0.52 9.87 6.78 -10.99 -0.07 9.80 16 7 O -0.52 -12.18 15.41 5.56 0.09 -12.09 16 8 C -0.07 -1.42 5.18 -29.03 -0.15 -1.57 16 9 C -0.18 -4.28 4.43 -103.91 -0.46 -4.74 16 10 C -0.08 -1.94 9.66 -39.66 -0.38 -2.33 16 11 C -0.24 -5.64 10.05 -39.29 -0.39 -6.04 16 12 C -0.11 -2.71 10.02 -39.66 -0.40 -3.11 16 13 C -0.16 -4.31 8.69 -38.87 -0.34 -4.65 16 14 C 0.13 3.40 5.58 -106.82 -0.60 2.80 16 15 C -0.45 -11.91 8.18 -37.74 -0.31 -12.22 16 16 H 0.07 1.90 6.63 -52.49 -0.35 1.55 16 17 C 0.07 1.89 5.23 -17.34 -0.09 1.80 16 18 N -0.80 -20.80 10.74 55.55 0.60 -20.20 16 19 Si 0.90 19.04 29.58 -169.99 -5.03 14.01 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 23 C -0.16 -1.80 5.02 -90.62 -0.45 -2.26 16 24 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 25 C -0.16 -2.06 9.50 -26.73 -0.25 -2.31 16 26 C -0.12 -1.37 2.70 -154.51 -0.42 -1.78 16 27 C -0.11 -1.01 9.85 37.16 0.37 -0.65 16 28 C -0.12 -1.43 8.38 37.16 0.31 -1.11 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.82 7.24 -51.93 -0.38 0.44 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.39 4.61 8.82 -40.82 -0.36 4.25 16 35 H 0.09 1.83 7.05 -51.93 -0.37 1.47 16 36 H 0.07 1.22 8.05 -51.93 -0.42 0.80 16 37 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.08 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 40 H 0.12 3.38 6.04 -52.49 -0.32 3.07 16 41 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 43 H 0.10 1.56 8.05 -51.93 -0.42 1.15 16 44 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 47 H 0.06 0.94 7.33 -51.93 -0.38 0.56 16 48 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 49 H 0.06 0.62 7.92 -51.93 -0.41 0.21 16 LS Contribution 393.65 15.07 5.93 5.93 Total: -1.00 -29.93 393.65 -10.49 -40.42 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -8.25 Total: 12.24 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -3.58 Total: -29.48 kcal Atomic # 7 Polarization: -31.39 SS G_CDS: 0.36 Total: -31.03 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.93 -10.49 -40.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841362632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.219 kcal (2) G-P(sol) polarization free energy of solvation -29.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds