Wall clock time and date at job start Tue Mar 31 2020 11:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47313 * 2 1 4 4 H 1.09011 * 109.47532 * 54.99545 * 3 2 1 5 5 N 1.46500 * 109.47180 * 295.00205 * 3 2 1 6 6 C 1.34778 * 120.00364 * 107.09367 * 5 3 2 7 7 O 1.21276 * 120.00113 * 0.02562 * 6 5 3 8 8 C 1.50699 * 119.99769 * 179.97438 * 6 5 3 9 9 C 1.50710 * 109.46758 * 180.02562 * 8 6 5 10 10 C 1.37633 * 120.12520 * 264.72859 * 9 8 6 11 11 C 1.38618 * 120.24531 * 179.72102 * 10 9 8 12 12 C 1.38654 * 120.49900 * 0.56028 * 11 10 9 13 13 C 1.37597 * 120.25082 * 359.72100 * 12 11 10 14 14 C 1.40688 * 120.12367 * 85.00537 * 9 8 6 15 15 C 1.41398 * 120.24752 * 359.97438 * 14 9 8 16 16 H 1.07998 * 120.00064 * 334.80007 * 15 14 9 17 17 C 1.39948 * 119.99852 * 154.79576 * 15 14 9 18 18 N 1.30822 * 120.00282 * 346.76620 * 17 15 14 19 19 Si 1.86805 * 119.99773 * 166.76263 * 17 15 14 20 20 H 1.48502 * 109.46935 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.46944 * 120.00431 * 19 17 15 22 22 H 1.48497 * 109.47087 * 240.00284 * 19 17 15 23 23 C 1.52995 * 109.47486 * 174.99836 * 3 2 1 24 24 H 1.09002 * 115.54988 * 39.59899 * 23 3 2 25 25 C 1.53001 * 117.50177 * 185.26531 * 23 3 2 26 26 C 1.53001 * 117.52368 * 253.89887 * 23 3 2 27 27 C 1.52997 * 117.50208 * 145.02696 * 26 23 3 28 28 C 1.53002 * 117.49321 * 0.02562 * 26 23 3 29 29 H 1.09002 * 109.46662 * 300.00077 * 1 2 3 30 30 H 1.08994 * 109.47055 * 59.99961 * 1 2 3 31 31 H 1.09000 * 109.47028 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47360 * 239.99804 * 2 1 3 33 33 H 1.09008 * 109.47071 * 119.99504 * 2 1 3 34 34 H 0.97006 * 119.99793 * 287.10186 * 5 3 2 35 35 H 1.08994 * 109.47884 * 300.00521 * 8 6 5 36 36 H 1.09003 * 109.47168 * 60.00723 * 8 6 5 37 37 H 1.07999 * 119.88295 * 359.97438 * 10 9 8 38 38 H 1.08004 * 119.75313 * 180.30035 * 11 10 9 39 39 H 1.08002 * 119.87680 * 179.74632 * 12 11 10 40 40 H 1.07996 * 120.13063 * 180.02562 * 13 12 11 41 41 H 0.96994 * 119.99743 * 179.97438 * 18 17 15 42 42 H 1.09005 * 117.50357 * 215.00098 * 25 23 3 43 43 H 1.08998 * 117.49581 * 0.03200 * 25 23 3 44 44 H 1.08998 * 109.47054 * 180.02562 * 27 26 23 45 45 H 1.09000 * 109.46903 * 300.01348 * 27 26 23 46 46 H 1.08996 * 109.47269 * 60.01168 * 27 26 23 47 47 H 1.09002 * 109.46998 * 299.98312 * 28 26 23 48 48 H 1.09001 * 109.47560 * 59.98567 * 28 26 23 49 49 H 1.09003 * 109.46825 * 179.97438 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.6743 3.0247 -1.2525 7 8 0.1153 3.3172 -0.2168 8 6 0.2762 3.6988 -2.5401 9 6 -0.8301 4.6858 -2.2692 10 6 -2.1441 4.3164 -2.4463 11 6 -3.1638 5.2204 -2.1923 12 6 -2.8732 6.5083 -1.7688 13 6 -1.5666 6.9011 -1.5905 14 6 -0.5233 5.9899 -1.8398 15 6 0.8231 6.3822 -1.6594 16 1 1.5782 5.6396 -1.4476 17 6 1.1773 7.7327 -1.7555 18 7 0.3340 8.5958 -2.2607 19 14 2.8544 8.3029 -1.1623 20 1 3.6154 7.1405 -0.6379 21 1 3.5989 8.9119 -2.2936 22 1 2.6821 9.3094 -0.0841 23 6 3.5648 1.4443 0.1258 24 1 4.0840 0.6692 -0.4380 25 6 4.2603 2.7996 0.2686 26 6 4.1628 1.8592 1.4716 27 6 5.4435 1.1544 1.9230 28 6 3.1899 2.2401 2.5894 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8901 34 1 2.0998 1.8637 -2.0802 35 1 1.1361 4.2229 -2.9570 36 1 -0.0716 2.9488 -3.2505 37 1 -2.3818 3.3173 -2.7806 38 1 -4.1923 4.9206 -2.3293 39 1 -3.6754 7.2056 -1.5777 40 1 -1.3425 7.9046 -1.2601 41 1 0.5794 9.5319 -2.3270 42 1 5.2370 2.9162 -0.2011 43 1 3.6314 3.6899 0.2735 44 1 5.7523 1.5474 2.8917 45 1 5.2584 0.0836 2.0078 46 1 6.2321 1.3300 1.1914 47 1 2.5836 3.0878 2.2702 48 1 2.5414 1.3925 2.8111 49 1 3.7517 2.5111 3.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841362632.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:28 Heat of formation + Delta-G solvation = -34.905998 kcal Electronic energy + Delta-G solvation = -27142.379304 eV Core-core repulsion = 23647.090519 eV Total energy + Delta-G solvation = -3495.288785 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.10787 -39.77274 -38.85773 -36.11497 -35.50242 -33.67804 -32.81157 -31.31640 -30.39393 -28.85814 -28.40758 -27.28900 -26.58980 -22.83022 -22.71163 -22.44459 -21.50174 -20.98332 -19.66966 -19.05469 -17.72705 -17.43301 -17.01002 -16.48842 -16.16020 -15.79866 -15.56229 -15.36518 -15.09253 -14.74300 -14.54683 -14.45542 -14.35369 -13.97632 -13.57688 -13.50607 -13.35430 -13.10912 -13.02300 -12.88953 -12.76607 -12.75171 -12.62971 -12.49572 -12.30634 -12.19867 -12.11593 -11.93843 -11.59283 -11.33560 -11.18765 -11.05830 -10.96986 -10.70441 -10.42832 -9.82503 -9.21167 -9.14884 -8.56890 -6.29607 0.98668 1.14449 1.33252 1.46606 1.50312 1.93080 2.18295 2.30616 2.78664 2.95219 3.52475 3.77868 3.87668 3.88678 4.16755 4.16891 4.21275 4.26550 4.31656 4.41368 4.46127 4.60175 4.62714 4.71122 4.72459 4.75587 4.81286 4.88177 4.92931 4.96877 5.03557 5.05094 5.06572 5.07853 5.09623 5.17747 5.20557 5.25416 5.34556 5.40000 5.42825 5.49483 5.56598 5.75358 5.78453 6.05042 6.18495 6.22759 6.42734 6.73180 6.81642 7.00434 7.12482 7.56945 8.37669 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011153 B = 0.005041 C = 0.003754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2509.981082 B = 5552.610054 C = 7456.963364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.160 3.840 4 H 0.069 0.931 5 N -0.715 5.715 6 C 0.521 3.479 7 O -0.573 6.573 8 C -0.072 4.072 9 C -0.182 4.182 10 C -0.094 4.094 11 C -0.241 4.241 12 C -0.120 4.120 13 C -0.194 4.194 14 C 0.094 3.906 15 C -0.476 4.476 16 H 0.069 0.931 17 C 0.034 3.966 18 N -0.829 5.829 19 Si 0.970 3.030 20 H -0.263 1.263 21 H -0.260 1.260 22 H -0.270 1.270 23 C -0.145 4.145 24 H 0.132 0.868 25 C -0.179 4.179 26 C -0.114 4.114 27 C -0.108 4.108 28 C -0.119 4.119 29 H 0.031 0.969 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.410 0.590 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.284 0.716 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.028 0.972 48 H 0.066 0.934 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.461 -16.317 2.717 19.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C 0.056 3.944 4 H 0.087 0.913 5 N -0.368 5.368 6 C 0.309 3.691 7 O -0.451 6.451 8 C -0.112 4.112 9 C -0.184 4.184 10 C -0.112 4.112 11 C -0.260 4.260 12 C -0.138 4.138 13 C -0.214 4.214 14 C 0.091 3.909 15 C -0.506 4.506 16 H 0.087 0.913 17 C -0.180 4.180 18 N -0.456 5.456 19 Si 0.791 3.209 20 H -0.186 1.186 21 H -0.184 1.184 22 H -0.195 1.195 23 C -0.164 4.164 24 H 0.150 0.850 25 C -0.216 4.216 26 C -0.114 4.114 27 C -0.165 4.165 28 C -0.176 4.176 29 H 0.050 0.950 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.111 0.889 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.095 0.905 42 H 0.126 0.874 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.047 0.953 48 H 0.085 0.915 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.036 -15.860 3.390 19.072 hybrid contribution 0.295 1.092 -0.131 1.139 sum 10.331 -14.768 3.259 18.315 Atomic orbital electron populations 1.21674 0.96703 1.01396 1.00548 1.21802 0.95179 0.94792 1.03771 1.20665 0.92352 0.93924 0.87483 0.91310 1.45872 1.38023 1.41235 1.11624 1.20959 0.78867 0.78254 0.91010 1.90649 1.55129 1.63910 1.35446 1.20293 0.98780 0.97201 0.94880 1.19528 0.93615 0.95664 1.09602 1.20714 0.92523 0.98131 0.99794 1.20714 0.98190 0.94742 1.12388 1.20953 0.95861 0.96372 1.00640 1.21419 0.92501 1.00598 1.06849 1.17740 0.93638 0.91345 0.88129 1.19625 0.94046 0.93019 1.43886 0.91299 1.26652 1.02496 0.96489 0.92339 1.69878 1.37712 1.04531 1.33454 0.85341 0.77761 0.78776 0.78991 1.18637 1.18415 1.19510 1.22772 0.93624 0.98824 1.01163 0.84975 1.23125 1.02022 0.93349 1.03103 1.21666 0.98747 1.02025 0.88982 1.21343 0.93294 1.00288 1.01562 1.21385 0.98155 1.00512 0.97589 0.95023 0.94526 0.91091 0.89682 0.89659 0.75362 0.88863 0.87274 0.86715 0.86796 0.87808 0.88064 0.90493 0.87444 0.92441 0.91699 0.90797 0.91724 0.95309 0.91539 0.90948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.70 71.98 0.70 -2.87 16 2 C -0.12 -2.33 5.61 30.59 0.17 -2.16 16 3 C 0.16 4.08 2.24 44.99 0.10 4.18 16 4 H 0.07 2.30 4.94 -2.38 -0.01 2.29 16 5 N -0.72 -19.96 4.45 -442.54 -1.97 -21.93 16 6 C 0.52 20.11 6.78 87.66 0.59 20.70 16 7 O -0.57 -27.95 15.41 -3.02 -0.05 -27.99 16 8 C -0.07 -2.80 5.18 29.10 0.15 -2.65 16 9 C -0.18 -8.94 4.43 -19.41 -0.09 -9.03 16 10 C -0.09 -4.31 9.66 22.22 0.21 -4.10 16 11 C -0.24 -11.27 10.05 22.46 0.23 -11.05 16 12 C -0.12 -6.08 10.02 22.22 0.22 -5.85 16 13 C -0.19 -11.02 8.69 22.73 0.20 -10.82 16 14 C 0.09 5.25 5.58 -21.29 -0.12 5.13 16 15 C -0.48 -26.24 8.18 23.46 0.19 -26.05 16 16 H 0.07 3.73 6.63 -2.91 -0.02 3.71 16 17 C 0.03 1.77 5.23 85.26 0.45 2.22 16 18 N -0.83 -44.87 10.74 21.83 0.23 -44.64 16 19 Si 0.97 40.19 29.58 68.60 2.03 42.22 16 20 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 23 C -0.15 -2.98 5.02 -10.79 -0.05 -3.04 16 24 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 25 C -0.18 -4.44 9.50 30.60 0.29 -4.15 16 26 C -0.11 -2.37 2.70 -52.18 -0.14 -2.51 16 27 C -0.11 -1.58 9.85 71.98 0.71 -0.87 16 28 C -0.12 -2.85 8.38 71.98 0.60 -2.25 16 29 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.04 1.02 7.24 -2.39 -0.02 1.01 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 34 H 0.41 8.71 8.82 -92.70 -0.82 7.89 16 35 H 0.09 3.65 7.05 -2.39 -0.02 3.63 16 36 H 0.11 3.39 8.05 -2.39 -0.02 3.37 16 37 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 38 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 39 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 40 H 0.10 6.02 6.04 -2.91 -0.02 6.00 16 41 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 42 H 0.11 2.28 8.05 -2.38 -0.02 2.26 16 43 H 0.06 1.92 8.05 -2.39 -0.02 1.90 16 44 H 0.06 0.90 7.92 -2.39 -0.02 0.88 16 45 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.06 0.86 7.90 -2.39 -0.02 0.84 16 47 H 0.03 0.88 7.33 -2.39 -0.02 0.86 16 48 H 0.07 1.47 8.09 -2.39 -0.02 1.45 16 49 H 0.07 1.49 7.92 -2.39 -0.02 1.47 16 Total: -1.00 -69.75 393.65 4.78 -64.97 By element: Atomic # 1 Polarization: 42.43 SS G_CDS: 0.11 Total: 42.55 kcal Atomic # 6 Polarization: -59.59 SS G_CDS: 4.42 Total: -55.17 kcal Atomic # 7 Polarization: -64.84 SS G_CDS: -1.73 Total: -66.57 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: -0.05 Total: -27.99 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -69.75 4.78 -64.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841362632.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.069 kcal (2) G-P(sol) polarization free energy of solvation -69.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds