Wall clock time and date at job start Tue Mar 31 2020 11:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 H 1.09000 * 109.49656 * 305.06099 * 3 2 1 5 5 C 1.53039 * 109.49498 * 185.00074 * 3 2 1 6 6 C 1.53042 * 109.53701 * 178.64897 * 5 3 2 7 7 C 1.53198 * 109.31055 * 61.36765 * 6 5 3 8 8 H 1.08994 * 109.70362 * 65.22185 * 7 6 5 9 9 C 1.53000 * 109.58162 * 185.57512 * 7 6 5 10 10 N 1.46922 * 108.77307 * 305.35853 * 7 6 5 11 11 C 1.34773 * 120.63452 * 233.58306 * 10 7 6 12 12 O 1.21278 * 119.99755 * 354.48996 * 11 10 7 13 13 C 1.50694 * 120.00225 * 174.48451 * 11 10 7 14 14 C 1.50700 * 109.47539 * 180.02562 * 13 11 10 15 15 C 1.37640 * 120.12607 * 264.99972 * 14 13 11 16 16 C 1.38610 * 120.25013 * 180.02562 * 15 14 13 17 17 C 1.38655 * 120.50158 * 359.97438 * 16 15 14 18 18 C 1.37601 * 120.24599 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.13056 * 85.01773 * 14 13 11 20 20 C 1.41396 * 120.24111 * 359.97438 * 19 14 13 21 21 H 1.07998 * 120.00257 * 330.73157 * 20 19 14 22 22 C 1.39952 * 119.99649 * 150.73883 * 20 19 14 23 23 N 1.30821 * 119.99886 * 349.81221 * 22 20 19 24 24 Si 1.86795 * 119.99674 * 169.81300 * 22 20 19 25 25 H 1.48507 * 109.47199 * 90.00009 * 24 22 20 26 26 H 1.48498 * 109.47080 * 209.99916 * 24 22 20 27 27 H 1.48506 * 109.47362 * 329.99725 * 24 22 20 28 28 C 1.46932 * 118.73627 * 53.86594 * 10 7 6 29 29 H 1.08995 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46952 * 300.00403 * 1 2 3 31 31 H 1.09000 * 109.47084 * 59.99891 * 1 2 3 32 32 H 1.09002 * 109.46952 * 239.99597 * 2 1 3 33 33 H 1.09000 * 109.47084 * 120.00109 * 2 1 3 34 34 H 1.08998 * 109.46403 * 58.62977 * 5 3 2 35 35 H 1.09001 * 109.45085 * 298.66432 * 5 3 2 36 36 H 1.08991 * 109.50134 * 301.41150 * 6 5 3 37 37 H 1.09010 * 109.49690 * 181.31352 * 6 5 3 38 38 H 1.08998 * 109.46755 * 186.47485 * 9 7 6 39 39 H 1.08997 * 109.47613 * 306.47713 * 9 7 6 40 40 H 1.09000 * 109.47286 * 66.48235 * 9 7 6 41 41 H 1.09004 * 109.47405 * 60.00075 * 13 11 10 42 42 H 1.09009 * 109.47180 * 300.00206 * 13 11 10 43 43 H 1.08003 * 119.87424 * 0.02562 * 15 14 13 44 44 H 1.07995 * 119.74864 * 179.97438 * 16 15 14 45 45 H 1.07995 * 119.88005 * 179.72266 * 17 16 15 46 46 H 1.08003 * 120.12706 * 179.97438 * 18 17 16 47 47 H 0.97002 * 119.99511 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.58311 * 65.92353 * 28 10 7 49 49 H 1.08996 * 109.58524 * 186.34644 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 3.5652 1.4449 -0.1258 6 6 4.0736 2.8880 -0.1597 7 6 3.6952 3.5894 1.1486 8 1 4.2209 3.1223 1.9814 9 6 4.0768 5.0688 1.0663 10 7 2.2451 3.4652 1.3495 11 6 1.4858 4.5573 1.5664 12 8 2.0092 5.6435 1.6969 13 6 -0.0135 4.4288 1.6467 14 6 -0.6216 5.7855 1.8932 15 6 -0.9171 6.1873 3.1760 16 6 -1.4769 7.4344 3.4056 17 6 -1.7451 8.2908 2.3487 18 6 -1.4569 7.9104 1.0581 19 6 -0.8897 6.6461 0.8129 20 6 -0.5902 6.2441 -0.5092 21 1 0.2232 5.5580 -0.6939 22 6 -1.3477 6.7353 -1.5785 23 7 -2.4492 7.4023 -1.3478 24 14 -0.7860 6.4384 -3.3351 25 1 -1.3671 5.1654 -3.8322 26 1 -1.2405 7.5596 -4.1963 27 1 0.6962 6.3543 -3.3734 28 6 1.6394 2.1270 1.3156 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8547 0.9363 -1.0453 35 1 4.0007 0.9265 0.7285 36 1 3.6193 3.4142 -0.9992 37 1 5.1579 2.8892 -0.2728 38 1 3.9137 5.5405 2.0354 39 1 5.1276 5.1583 0.7909 40 1 3.4607 5.5616 0.3142 41 1 -0.2775 3.7580 2.4643 42 1 -0.3944 4.0254 0.7084 43 1 -0.7120 5.5284 4.0068 44 1 -1.7060 7.7412 4.4154 45 1 -2.1855 9.2584 2.5387 46 1 -1.6670 8.5789 0.2362 47 1 -2.9744 7.7425 -2.0890 48 1 2.0009 1.5408 2.1606 49 1 0.5543 2.2157 1.3674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855931875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:47 Heat of formation + Delta-G solvation = -29.160732 kcal Electronic energy + Delta-G solvation = -27750.832595 eV Core-core repulsion = 24255.792944 eV Total energy + Delta-G solvation = -3495.039651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.21341 -37.94587 -37.01615 -34.53510 -33.54435 -32.98840 -31.41293 -30.42729 -29.38200 -27.16829 -26.38732 -25.06435 -24.81531 -22.74951 -21.47077 -20.86115 -20.30445 -19.68762 -18.39307 -17.09377 -16.32011 -16.02681 -15.46425 -14.94774 -14.63220 -14.44997 -14.10803 -13.89008 -13.80049 -13.68764 -13.48949 -13.01588 -12.77547 -12.57374 -12.48034 -12.06101 -12.02031 -11.84845 -11.64020 -11.50610 -11.28874 -11.09915 -11.05046 -10.95576 -10.92990 -10.86324 -10.64035 -10.61475 -10.54534 -10.35779 -10.27049 -9.44430 -9.29994 -9.15937 -8.43365 -8.16267 -7.25507 -7.19420 -6.64142 -4.30829 2.82135 3.00204 3.08893 3.14078 3.29166 3.36931 3.47863 3.98047 4.57608 4.71307 4.73328 4.79899 4.97381 5.14543 5.23088 5.32734 5.33138 5.42357 5.52986 5.58502 5.68947 5.75212 5.81321 5.83236 5.87983 5.92665 5.96785 6.02691 6.07011 6.08557 6.13065 6.18780 6.22635 6.32080 6.36554 6.47633 6.53918 6.55204 6.74948 6.85283 7.08888 7.15340 7.34588 7.47381 7.69585 7.90671 7.98378 8.13755 8.17139 8.37298 8.70649 8.94172 8.98063 9.06684 10.29621 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.005288 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.063723 B = 5293.751457 C = 6125.026067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.107 4.107 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.132 4.132 7 C 0.147 3.853 8 H 0.061 0.939 9 C -0.138 4.138 10 N -0.623 5.623 11 C 0.518 3.482 12 O -0.512 6.512 13 C -0.071 4.071 14 C -0.175 4.175 15 C -0.085 4.085 16 C -0.234 4.234 17 C -0.110 4.110 18 C -0.153 4.153 19 C 0.128 3.872 20 C -0.455 4.455 21 H 0.072 0.928 22 C 0.075 3.925 23 N -0.804 5.804 24 Si 0.902 3.098 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.263 1.263 28 C 0.115 3.885 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.035 0.965 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.278 0.722 48 H 0.061 0.939 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.949 -13.571 0.877 15.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.126 4.126 4 H 0.097 0.903 5 C -0.149 4.149 6 C -0.171 4.171 7 C 0.043 3.957 8 H 0.079 0.921 9 C -0.195 4.195 10 N -0.360 5.360 11 C 0.308 3.692 12 O -0.386 6.386 13 C -0.111 4.111 14 C -0.176 4.176 15 C -0.103 4.103 16 C -0.254 4.254 17 C -0.129 4.129 18 C -0.172 4.172 19 C 0.126 3.874 20 C -0.485 4.485 21 H 0.090 0.910 22 C -0.141 4.141 23 N -0.430 5.430 24 Si 0.727 3.273 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.187 1.187 28 C -0.008 4.008 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.113 0.887 43 H 0.102 0.898 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.136 0.864 47 H 0.089 0.911 48 H 0.080 0.920 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.030 -12.825 0.822 15.154 hybrid contribution 0.135 -0.241 -0.904 0.945 sum 8.165 -13.066 -0.082 15.408 Atomic orbital electron populations 1.21850 0.95574 1.01517 1.02571 1.21511 0.96160 0.95722 1.01878 1.21690 0.95959 0.96121 0.98837 0.90305 1.21549 0.95092 0.96595 1.01673 1.22026 1.00711 0.95853 0.98495 1.21132 0.80898 0.97602 0.96034 0.92136 1.22194 0.98550 0.93727 1.04988 1.48286 1.07246 1.06702 1.73733 1.21136 0.89840 0.83186 0.75040 1.90710 1.73416 1.26975 1.47537 1.20329 0.90290 0.97851 1.02622 1.19127 1.10066 0.94830 0.93620 1.20296 0.99482 0.95734 0.94820 1.20319 1.11622 0.96739 0.96694 1.20690 1.00688 0.97668 0.93845 1.21345 1.04065 0.96942 0.94890 1.17338 0.88312 0.89847 0.91920 1.19434 1.13937 1.24537 0.90634 0.90969 1.25844 0.93818 0.93241 1.01207 1.69793 1.11031 1.28414 1.33802 0.86407 0.80275 0.78689 0.81929 1.19593 1.20168 1.18660 1.21843 0.99198 0.83152 0.96618 0.92920 0.92242 0.92366 0.91947 0.92024 0.91974 0.92072 0.91337 0.91260 0.90514 0.94658 0.91049 0.91012 0.88743 0.89843 0.89709 0.89614 0.86362 0.91138 0.92036 0.89237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.68 37.16 0.36 -1.08 16 2 C -0.11 -1.01 5.40 -26.73 -0.14 -1.15 16 3 C -0.11 -1.15 2.35 -90.28 -0.21 -1.36 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 5 C -0.11 -1.12 5.16 -26.69 -0.14 -1.26 16 6 C -0.13 -1.58 5.37 -26.61 -0.14 -1.72 16 7 C 0.15 2.07 3.49 -67.60 -0.24 1.84 16 8 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 9 C -0.14 -2.25 7.61 37.16 0.28 -1.97 16 10 N -0.62 -9.72 2.97 -164.96 -0.49 -10.21 16 11 C 0.52 10.25 7.11 -10.99 -0.08 10.17 16 12 O -0.51 -11.94 11.60 5.56 0.06 -11.88 16 13 C -0.07 -1.42 3.55 -29.04 -0.10 -1.52 16 14 C -0.17 -4.23 4.43 -103.91 -0.46 -4.70 16 15 C -0.08 -1.98 9.66 -39.66 -0.38 -2.37 16 16 C -0.23 -5.52 10.05 -39.29 -0.39 -5.91 16 17 C -0.11 -2.72 10.02 -39.66 -0.40 -3.12 16 18 C -0.15 -4.13 8.66 -38.87 -0.34 -4.47 16 19 C 0.13 3.45 5.55 -106.83 -0.59 2.85 16 20 C -0.45 -12.06 8.07 -37.74 -0.30 -12.37 16 21 H 0.07 1.88 6.77 -52.49 -0.36 1.53 16 22 C 0.07 1.90 5.26 -17.34 -0.09 1.81 16 23 N -0.80 -21.03 10.85 55.55 0.60 -20.43 16 24 Si 0.90 19.14 29.57 -169.99 -5.03 14.12 16 25 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 28 C 0.12 1.40 5.27 -3.48 -0.02 1.38 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.08 1.41 6.65 -51.93 -0.35 1.07 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 1.39 6.85 -51.93 -0.36 1.04 16 41 H 0.07 1.22 7.62 -51.93 -0.40 0.83 16 42 H 0.09 1.88 6.90 -51.92 -0.36 1.53 16 43 H 0.08 1.72 8.06 -52.48 -0.42 1.30 16 44 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 45 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 46 H 0.12 3.29 6.24 -52.48 -0.33 2.96 16 47 H 0.28 6.66 8.30 -40.82 -0.34 6.32 16 48 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.09 1.09 4.66 -51.93 -0.24 0.85 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -29.58 375.57 -10.78 -40.37 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -8.20 Total: 7.31 kcal Atomic # 6 Polarization: -21.55 SS G_CDS: -3.39 Total: -24.94 kcal Atomic # 7 Polarization: -30.75 SS G_CDS: 0.11 Total: -30.64 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.06 Total: -11.88 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.58 -10.78 -40.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855931875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.205 kcal (2) G-P(sol) polarization free energy of solvation -29.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds