Wall clock time and date at job start Tue Mar 31 2020 11:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47156 * 2 1 4 4 H 1.09000 * 109.49656 * 305.06099 * 3 2 1 5 5 C 1.53039 * 109.49498 * 185.00074 * 3 2 1 6 6 C 1.53042 * 109.53701 * 178.64897 * 5 3 2 7 7 C 1.53198 * 109.31055 * 61.36765 * 6 5 3 8 8 H 1.08994 * 109.70362 * 65.22185 * 7 6 5 9 9 C 1.53000 * 109.58162 * 185.57512 * 7 6 5 10 10 N 1.46922 * 108.77307 * 305.35853 * 7 6 5 11 11 C 1.34773 * 120.63452 * 233.58306 * 10 7 6 12 12 O 1.21278 * 119.99755 * 354.48996 * 11 10 7 13 13 C 1.50694 * 120.00225 * 174.48451 * 11 10 7 14 14 C 1.50700 * 109.47539 * 180.02562 * 13 11 10 15 15 C 1.37640 * 120.12607 * 264.99972 * 14 13 11 16 16 C 1.38610 * 120.25013 * 180.02562 * 15 14 13 17 17 C 1.38655 * 120.50158 * 359.97438 * 16 15 14 18 18 C 1.37601 * 120.24599 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.13056 * 85.01773 * 14 13 11 20 20 C 1.41396 * 120.24111 * 359.97438 * 19 14 13 21 21 H 1.07998 * 120.00257 * 330.73157 * 20 19 14 22 22 C 1.39952 * 119.99649 * 150.73883 * 20 19 14 23 23 N 1.30821 * 119.99886 * 349.81221 * 22 20 19 24 24 Si 1.86795 * 119.99674 * 169.81300 * 22 20 19 25 25 H 1.48507 * 109.47199 * 90.00009 * 24 22 20 26 26 H 1.48498 * 109.47080 * 209.99916 * 24 22 20 27 27 H 1.48506 * 109.47362 * 329.99725 * 24 22 20 28 28 C 1.46932 * 118.73627 * 53.86594 * 10 7 6 29 29 H 1.08995 * 109.47378 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46952 * 300.00403 * 1 2 3 31 31 H 1.09000 * 109.47084 * 59.99891 * 1 2 3 32 32 H 1.09002 * 109.46952 * 239.99597 * 2 1 3 33 33 H 1.09000 * 109.47084 * 120.00109 * 2 1 3 34 34 H 1.08998 * 109.46403 * 58.62977 * 5 3 2 35 35 H 1.09001 * 109.45085 * 298.66432 * 5 3 2 36 36 H 1.08991 * 109.50134 * 301.41150 * 6 5 3 37 37 H 1.09010 * 109.49690 * 181.31352 * 6 5 3 38 38 H 1.08998 * 109.46755 * 186.47485 * 9 7 6 39 39 H 1.08997 * 109.47613 * 306.47713 * 9 7 6 40 40 H 1.09000 * 109.47286 * 66.48235 * 9 7 6 41 41 H 1.09004 * 109.47405 * 60.00075 * 13 11 10 42 42 H 1.09009 * 109.47180 * 300.00206 * 13 11 10 43 43 H 1.08003 * 119.87424 * 0.02562 * 15 14 13 44 44 H 1.07995 * 119.74864 * 179.97438 * 16 15 14 45 45 H 1.07995 * 119.88005 * 179.72266 * 17 16 15 46 46 H 1.08003 * 120.12706 * 179.97438 * 18 17 16 47 47 H 0.97002 * 119.99511 * 180.02562 * 23 22 20 48 48 H 1.09005 * 109.58311 * 65.92353 * 28 10 7 49 49 H 1.08996 * 109.58524 * 186.34644 * 28 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9822 -0.8410 5 6 3.5652 1.4449 -0.1258 6 6 4.0736 2.8880 -0.1597 7 6 3.6952 3.5894 1.1486 8 1 4.2209 3.1223 1.9814 9 6 4.0768 5.0688 1.0663 10 7 2.2451 3.4652 1.3495 11 6 1.4858 4.5573 1.5664 12 8 2.0092 5.6435 1.6969 13 6 -0.0135 4.4288 1.6467 14 6 -0.6216 5.7855 1.8932 15 6 -0.9171 6.1873 3.1760 16 6 -1.4769 7.4344 3.4056 17 6 -1.7451 8.2908 2.3487 18 6 -1.4569 7.9104 1.0581 19 6 -0.8897 6.6461 0.8129 20 6 -0.5902 6.2441 -0.5092 21 1 0.2232 5.5580 -0.6939 22 6 -1.3477 6.7353 -1.5785 23 7 -2.4492 7.4023 -1.3478 24 14 -0.7860 6.4384 -3.3351 25 1 -1.3671 5.1654 -3.8322 26 1 -1.2405 7.5596 -4.1963 27 1 0.6962 6.3543 -3.3734 28 6 1.6394 2.1270 1.3156 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.8547 0.9363 -1.0453 35 1 4.0007 0.9265 0.7285 36 1 3.6193 3.4142 -0.9992 37 1 5.1579 2.8892 -0.2728 38 1 3.9137 5.5405 2.0354 39 1 5.1276 5.1583 0.7909 40 1 3.4607 5.5616 0.3142 41 1 -0.2775 3.7580 2.4643 42 1 -0.3944 4.0254 0.7084 43 1 -0.7120 5.5284 4.0068 44 1 -1.7060 7.7412 4.4154 45 1 -2.1855 9.2584 2.5387 46 1 -1.6670 8.5789 0.2362 47 1 -2.9744 7.7425 -2.0890 48 1 2.0009 1.5408 2.1606 49 1 0.5543 2.2157 1.3674 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855931875.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:46 Heat of formation + Delta-G solvation = -42.848224 kcal Electronic energy + Delta-G solvation = -27751.426130 eV Core-core repulsion = 24255.792944 eV Total energy + Delta-G solvation = -3495.633185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52656 -39.54431 -38.47858 -35.58816 -35.47281 -34.33454 -32.94274 -31.48209 -31.30206 -28.65232 -27.72870 -26.86668 -25.92150 -23.83270 -22.82138 -22.60078 -21.39777 -21.11365 -19.80166 -19.02957 -17.65647 -17.32788 -17.20635 -16.38946 -16.14253 -15.73259 -15.47925 -15.26871 -14.94789 -14.90436 -14.64935 -14.40898 -14.34820 -14.07489 -13.63674 -13.42032 -13.37344 -13.16579 -13.08926 -12.93038 -12.82911 -12.75598 -12.58816 -12.47883 -12.16289 -12.12589 -12.00359 -11.87443 -11.49643 -11.45000 -11.33231 -11.21368 -11.12986 -11.06791 -9.96625 -9.40951 -9.19428 -9.12478 -8.55817 -6.31601 0.98639 1.13073 1.32130 1.43916 1.49316 1.85904 2.18202 2.19407 2.79739 3.61866 3.75191 3.85088 3.91837 3.97881 4.13511 4.19838 4.32291 4.38134 4.41630 4.47599 4.51047 4.58623 4.64469 4.65581 4.71098 4.74809 4.77973 4.80415 4.84820 5.01124 5.04644 5.06049 5.15490 5.17095 5.19883 5.21755 5.25903 5.37142 5.38949 5.42893 5.48270 5.54514 5.60175 5.77798 5.84770 6.03711 6.16946 6.20613 6.42672 6.57397 6.74384 7.00176 7.10921 7.47276 8.39973 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.005288 C = 0.004570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.063723 B = 5293.751457 C = 6125.026067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.106 4.106 3 C -0.104 4.104 4 H 0.051 0.949 5 C -0.106 4.106 6 C -0.128 4.128 7 C 0.142 3.858 8 H 0.087 0.913 9 C -0.128 4.128 10 N -0.616 5.616 11 C 0.515 3.485 12 O -0.559 6.559 13 C -0.067 4.067 14 C -0.180 4.180 15 C -0.095 4.095 16 C -0.235 4.235 17 C -0.120 4.120 18 C -0.186 4.186 19 C 0.095 3.905 20 C -0.479 4.479 21 H 0.064 0.936 22 C 0.034 3.966 23 N -0.834 5.834 24 Si 0.969 3.031 25 H -0.256 1.256 26 H -0.267 1.267 27 H -0.269 1.269 28 C 0.107 3.893 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.041 0.959 37 H 0.092 0.908 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.029 0.971 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.098 0.902 47 H 0.284 0.716 48 H 0.090 0.910 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.248 -16.660 1.466 19.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.144 4.144 3 C -0.124 4.124 4 H 0.070 0.930 5 C -0.143 4.143 6 C -0.166 4.166 7 C 0.040 3.960 8 H 0.105 0.895 9 C -0.186 4.186 10 N -0.351 5.351 11 C 0.305 3.695 12 O -0.437 6.437 13 C -0.106 4.106 14 C -0.182 4.182 15 C -0.113 4.113 16 C -0.254 4.254 17 C -0.139 4.139 18 C -0.206 4.206 19 C 0.093 3.907 20 C -0.509 4.509 21 H 0.082 0.918 22 C -0.179 4.179 23 N -0.461 5.461 24 Si 0.790 3.210 25 H -0.180 1.180 26 H -0.191 1.191 27 H -0.194 1.194 28 C -0.014 4.014 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.124 0.876 46 H 0.116 0.884 47 H 0.095 0.905 48 H 0.108 0.892 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.326 -15.966 1.413 18.544 hybrid contribution -0.257 0.715 -0.974 1.235 sum 9.069 -15.251 0.439 17.749 Atomic orbital electron populations 1.21876 0.96204 1.02075 1.01659 1.21459 0.95524 0.94173 1.03248 1.21651 0.96784 0.97061 0.96857 0.92997 1.21545 0.94113 0.95251 1.03420 1.21991 1.02045 0.96660 0.95898 1.21332 0.80016 0.96318 0.98351 0.89546 1.21998 0.99302 0.95109 1.02161 1.48299 1.07883 1.07005 1.71920 1.21022 0.89864 0.83572 0.75076 1.90709 1.74072 1.28899 1.50062 1.20290 0.90680 0.96161 1.03497 1.19596 1.08889 0.96225 0.93496 1.20723 0.98828 0.96336 0.95427 1.20733 1.10367 0.96522 0.97776 1.20962 1.00590 0.98923 0.93389 1.21339 1.06429 0.97324 0.95473 1.17714 0.89318 0.90504 0.93143 1.19515 1.14371 1.25552 0.91503 0.91814 1.26611 0.93559 0.92755 1.04963 1.69863 1.11896 1.29166 1.35204 0.85404 0.79210 0.79372 0.76984 1.17986 1.19145 1.19376 1.22154 0.99124 0.81578 0.98585 0.91619 0.92556 0.93965 0.90986 0.90145 0.90471 0.89920 0.93974 0.88918 0.93041 0.92029 0.95200 0.87774 0.89380 0.86673 0.86578 0.87631 0.88444 0.90542 0.89220 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.68 71.98 0.70 -1.92 16 2 C -0.11 -1.51 5.40 30.59 0.17 -1.35 16 3 C -0.10 -2.01 2.35 -10.57 -0.02 -2.03 16 4 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 5 C -0.11 -1.75 5.16 30.62 0.16 -1.59 16 6 C -0.13 -2.76 5.37 30.67 0.16 -2.60 16 7 C 0.14 3.80 3.49 44.98 0.16 3.96 16 8 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 9 C -0.13 -4.27 7.61 71.98 0.55 -3.72 16 10 N -0.62 -18.64 2.97 -794.21 -2.36 -21.00 16 11 C 0.52 20.65 7.11 87.66 0.62 21.28 16 12 O -0.56 -27.17 11.60 -3.02 -0.04 -27.21 16 13 C -0.07 -2.68 3.55 29.10 0.10 -2.57 16 14 C -0.18 -8.91 4.43 -19.40 -0.09 -8.99 16 15 C -0.10 -4.37 9.66 22.22 0.21 -4.16 16 16 C -0.23 -10.87 10.05 22.46 0.23 -10.64 16 17 C -0.12 -6.04 10.02 22.22 0.22 -5.82 16 18 C -0.19 -10.53 8.66 22.73 0.20 -10.33 16 19 C 0.10 5.36 5.55 -21.29 -0.12 5.24 16 20 C -0.48 -26.70 8.07 23.46 0.19 -26.51 16 21 H 0.06 3.53 6.77 -2.91 -0.02 3.51 16 22 C 0.03 1.80 5.26 85.26 0.45 2.25 16 23 N -0.83 -45.44 10.85 21.83 0.24 -45.20 16 24 Si 0.97 40.48 29.57 68.60 2.03 42.51 16 25 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 26 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 28 C 0.11 2.37 5.27 86.51 0.46 2.82 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.94 6.70 -2.39 -0.02 0.92 16 31 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.05 1.95 6.65 -2.39 -0.02 1.93 16 39 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.03 1.22 6.85 -2.39 -0.02 1.20 16 41 H 0.10 3.39 7.62 -2.38 -0.02 3.37 16 42 H 0.09 3.62 6.90 -2.38 -0.02 3.60 16 43 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.12 4.57 8.06 -2.91 -0.02 4.55 16 45 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 46 H 0.10 5.79 6.24 -2.91 -0.02 5.77 16 47 H 0.28 14.09 8.30 -92.71 -0.77 13.32 16 48 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.09 1.96 4.66 -2.39 -0.01 1.95 16 Total: -1.00 -68.78 375.57 5.13 -63.64 By element: Atomic # 1 Polarization: 33.03 SS G_CDS: 0.92 Total: 33.95 kcal Atomic # 6 Polarization: -51.04 SS G_CDS: 4.34 Total: -46.70 kcal Atomic # 7 Polarization: -64.08 SS G_CDS: -2.12 Total: -66.20 kcal Atomic # 8 Polarization: -27.17 SS G_CDS: -0.04 Total: -27.21 kcal Atomic # 14 Polarization: 40.48 SS G_CDS: 2.03 Total: 42.51 kcal Total: -68.78 5.13 -63.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855931875.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.796 kcal (2) G-P(sol) polarization free energy of solvation -68.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds