Wall clock time and date at job start Tue Mar 31 2020 11:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47031 * 2 1 4 4 H 1.09000 * 109.49824 * 55.06778 * 3 2 1 5 5 C 1.53035 * 109.49620 * 294.99995 * 3 2 1 6 6 C 1.53044 * 109.53652 * 178.68087 * 5 3 2 7 7 C 1.53190 * 109.30951 * 61.36861 * 6 5 3 8 8 H 1.09001 * 109.70650 * 65.22215 * 7 6 5 9 9 C 1.53006 * 109.58509 * 185.57459 * 7 6 5 10 10 N 1.46925 * 108.77750 * 305.36308 * 7 6 5 11 11 C 1.34770 * 120.63025 * 233.58835 * 10 7 6 12 12 O 1.21279 * 120.00162 * 3.73929 * 11 10 7 13 13 C 1.50707 * 119.99924 * 183.74145 * 11 10 7 14 14 H 1.08993 * 109.47176 * 59.99394 * 13 11 10 15 15 C 1.50697 * 109.46881 * 299.99885 * 13 11 10 16 16 H 1.07999 * 119.99904 * 125.31567 * 15 13 11 17 17 C 1.37881 * 120.00410 * 305.31615 * 15 13 11 18 18 N 1.31519 * 119.99434 * 5.69099 * 17 15 13 19 19 Si 1.86793 * 120.00438 * 185.69240 * 17 15 13 20 20 H 1.48498 * 109.47597 * 89.99721 * 19 17 15 21 21 H 1.48501 * 109.47315 * 209.99827 * 19 17 15 22 22 H 1.48505 * 109.47084 * 329.99642 * 19 17 15 23 23 C 1.50697 * 109.47008 * 180.02562 * 13 11 10 24 24 C 1.38231 * 120.00253 * 115.39041 * 23 13 11 25 25 C 1.38232 * 120.00153 * 179.97438 * 24 23 13 26 26 C 1.38235 * 120.00101 * 359.95300 * 25 24 23 27 27 C 1.38232 * 120.00055 * 359.97438 * 26 25 24 28 28 C 1.38237 * 119.99727 * 295.35931 * 23 13 11 29 29 C 1.46928 * 118.73582 * 53.86088 * 10 7 6 30 30 H 1.08992 * 109.47373 * 60.00294 * 1 2 3 31 31 H 1.09008 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47165 * 299.99458 * 1 2 3 33 33 H 1.09003 * 109.47165 * 240.00542 * 2 1 3 34 34 H 1.09001 * 109.47257 * 120.00309 * 2 1 3 35 35 H 1.09003 * 109.45814 * 58.66787 * 5 3 2 36 36 H 1.08996 * 109.46649 * 298.70675 * 5 3 2 37 37 H 1.08995 * 109.49862 * 301.41362 * 6 5 3 38 38 H 1.09004 * 109.49522 * 181.31816 * 6 5 3 39 39 H 1.08999 * 109.47028 * 183.18553 * 9 7 6 40 40 H 1.08995 * 109.46992 * 303.19620 * 9 7 6 41 41 H 1.09004 * 109.47086 * 63.19328 * 9 7 6 42 42 H 0.96999 * 119.99734 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.99973 * 359.97438 * 24 23 13 44 44 H 1.08003 * 120.00086 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00109 * 179.72146 * 26 25 24 46 46 H 1.07997 * 120.00480 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.00219 * 0.02562 * 28 23 13 48 48 H 1.09003 * 109.58635 * 65.92941 * 29 10 7 49 49 H 1.08995 * 109.58540 * 186.35175 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8424 5 6 1.6354 2.1273 -1.3074 6 6 2.1166 3.5801 -1.2945 7 6 3.6445 3.6067 -1.1874 8 1 4.0835 3.1698 -2.0844 9 6 4.1228 5.0520 -1.0342 10 7 4.0498 2.8263 -0.0104 11 6 4.8495 3.3672 0.9300 12 8 5.1865 4.5291 0.8442 13 6 5.3250 2.5282 2.0880 14 1 5.8972 1.6803 1.7116 15 6 4.1361 2.0261 2.8661 16 1 4.0165 0.9680 3.0463 17 6 3.2011 2.9175 3.3480 18 7 3.2852 4.1921 3.0348 19 14 1.8150 2.3150 4.4457 20 1 2.2441 2.3801 5.8658 21 1 0.6195 3.1738 4.2499 22 1 1.4793 0.9118 4.0939 23 6 6.1977 3.3638 2.9887 24 6 5.7942 3.6375 4.2822 25 6 6.5949 4.4035 5.1086 26 6 7.7996 4.8951 4.6417 27 6 8.2038 4.6203 3.3487 28 6 7.4019 3.8561 2.5215 29 6 3.5716 1.4431 0.1189 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 0.5503 2.1051 -1.4083 36 1 2.0888 1.6020 -2.1480 37 1 1.6828 4.0994 -0.4400 38 1 1.8077 4.0738 -2.2159 39 1 5.2124 5.0740 -1.0150 40 1 3.7619 5.6451 -1.8744 41 1 3.7346 5.4664 -0.1037 42 1 2.6277 4.8193 3.3741 43 1 4.8534 3.2527 4.6472 44 1 6.2795 4.6176 6.1191 45 1 8.4231 5.4974 5.2859 46 1 9.1448 5.0047 2.9838 47 1 7.7172 3.6423 1.5110 48 1 4.0027 0.8318 -0.6739 49 1 3.8642 1.0446 1.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131275904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:51 Heat of formation + Delta-G solvation = -7.044611 kcal Electronic energy + Delta-G solvation = -28767.212807 eV Core-core repulsion = 25273.132183 eV Total energy + Delta-G solvation = -3494.080624 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.66715 -38.13169 -36.66865 -34.31350 -33.64806 -31.89520 -30.80229 -29.88718 -29.64074 -27.35118 -26.73519 -24.08790 -23.41948 -22.58515 -21.52259 -21.19130 -19.96379 -19.56432 -18.02623 -16.81161 -15.72727 -15.44424 -15.06535 -14.66979 -14.46051 -14.21619 -14.01544 -13.79209 -13.67149 -13.36927 -12.87927 -12.68096 -12.49986 -12.41872 -12.20698 -12.04903 -11.70654 -11.61202 -11.46658 -11.30816 -11.18105 -10.97916 -10.78219 -10.72599 -10.63054 -10.37244 -10.26375 -10.17621 -10.06630 -9.94671 -9.71186 -9.66020 -9.34886 -8.54600 -7.82741 -7.71402 -7.39216 -7.31119 -6.18054 -4.27836 2.50445 2.59923 3.16141 3.26118 3.27206 4.08036 4.20855 4.43176 4.99297 5.04707 5.15273 5.21515 5.33257 5.42525 5.58442 5.61396 5.83136 5.83694 5.93469 5.94334 5.99108 6.02522 6.03247 6.14695 6.19538 6.21900 6.26394 6.34533 6.36267 6.44786 6.48054 6.58720 6.60018 6.62949 6.65435 6.80401 6.86272 6.90480 6.93201 7.03679 7.09653 7.22436 7.30445 7.50781 7.60790 7.68165 7.79395 7.81968 8.14637 8.25699 8.61360 8.83555 9.31878 9.83080 10.82536 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.006325 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.436371 B = 4425.617029 C = 5606.302122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.097 4.097 4 H 0.079 0.921 5 C -0.111 4.111 6 C -0.128 4.128 7 C 0.150 3.850 8 H 0.048 0.952 9 C -0.128 4.128 10 N -0.609 5.609 11 C 0.561 3.439 12 O -0.540 6.540 13 C 0.053 3.947 14 H 0.052 0.948 15 C -0.533 4.533 16 H 0.068 0.932 17 C 0.077 3.923 18 N -0.838 5.838 19 Si 0.876 3.124 20 H -0.278 1.278 21 H -0.286 1.286 22 H -0.269 1.269 23 C -0.016 4.016 24 C -0.059 4.059 25 C -0.149 4.149 26 C -0.144 4.144 27 C -0.143 4.143 28 C -0.113 4.113 29 C 0.112 3.888 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.052 0.948 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.079 0.921 42 H 0.265 0.735 43 H 0.136 0.864 44 H 0.101 0.899 45 H 0.100 0.900 46 H 0.101 0.899 47 H 0.101 0.899 48 H 0.036 0.964 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 -5.114 -5.414 7.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.116 4.116 4 H 0.097 0.903 5 C -0.148 4.148 6 C -0.167 4.167 7 C 0.046 3.954 8 H 0.066 0.934 9 C -0.185 4.185 10 N -0.343 5.343 11 C 0.352 3.648 12 O -0.417 6.417 13 C 0.032 3.968 14 H 0.070 0.930 15 C -0.571 4.571 16 H 0.087 0.913 17 C -0.130 4.130 18 N -0.471 5.471 19 Si 0.703 3.297 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.193 1.193 23 C -0.017 4.017 24 C -0.077 4.077 25 C -0.167 4.167 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.131 4.131 29 C -0.011 4.011 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.038 0.962 41 H 0.098 0.902 42 H 0.076 0.924 43 H 0.154 0.846 44 H 0.119 0.881 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.054 0.946 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.023 -4.258 -5.431 6.976 hybrid contribution -1.145 -0.064 0.572 1.282 sum -2.169 -4.322 -4.859 6.855 Atomic orbital electron populations 1.21798 0.96555 1.00803 1.01688 1.21480 0.95330 0.96893 1.01691 1.21535 0.96983 0.95152 0.97947 0.90295 1.21591 0.99874 0.95746 0.97635 1.21967 0.96583 0.96697 1.01413 1.20982 0.93252 0.93144 0.88047 0.93380 1.22170 1.02239 0.93551 1.00542 1.47813 1.50970 1.13385 1.22150 1.20755 0.75942 0.87524 0.80601 1.90566 1.58665 1.17251 1.75256 1.17985 0.94778 0.92915 0.91135 0.92962 1.20610 1.06515 0.93616 1.36352 0.91345 1.24945 0.97223 0.94937 0.95924 1.70062 1.34477 1.01617 1.40961 0.86831 0.82172 0.79214 0.81524 1.20337 1.21197 1.19347 1.19840 0.92113 0.95334 0.94368 1.21419 0.98310 0.94681 0.93320 1.21062 0.95519 1.00808 0.99314 1.20782 0.97347 1.02017 0.96052 1.20774 0.99574 1.01159 0.94604 1.20871 0.95392 0.98766 0.98104 1.22047 0.92297 0.82950 1.03818 0.92865 0.93380 0.92921 0.92535 0.91638 0.92617 0.92779 0.91476 0.92451 0.91449 0.96226 0.90185 0.92424 0.84628 0.88087 0.88188 0.88071 0.88130 0.94567 0.85911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 37.16 0.36 -1.52 16 2 C -0.12 -1.58 5.41 -26.73 -0.14 -1.72 16 3 C -0.10 -1.57 2.35 -90.28 -0.21 -1.78 16 4 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 5 C -0.11 -1.63 4.95 -26.69 -0.13 -1.76 16 6 C -0.13 -2.10 5.37 -26.61 -0.14 -2.25 16 7 C 0.15 2.73 3.49 -67.60 -0.24 2.50 16 8 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 9 C -0.13 -2.53 7.60 37.16 0.28 -2.24 16 10 N -0.61 -12.27 2.97 -164.95 -0.49 -12.75 16 11 C 0.56 12.98 5.25 -10.99 -0.06 12.92 16 12 O -0.54 -13.84 10.54 5.56 0.06 -13.78 16 13 C 0.05 1.21 1.93 -94.07 -0.18 1.03 16 14 H 0.05 1.12 8.07 -51.93 -0.42 0.70 16 15 C -0.53 -12.30 5.15 -34.44 -0.18 -12.48 16 16 H 0.07 1.54 7.50 -52.49 -0.39 1.14 16 17 C 0.08 1.84 3.17 -17.82 -0.06 1.79 16 18 N -0.84 -21.69 10.43 55.43 0.58 -21.11 16 19 Si 0.88 19.04 29.53 -169.99 -5.02 14.02 16 20 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 21 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 C -0.02 -0.37 4.51 -104.63 -0.47 -0.84 16 24 C -0.06 -1.39 8.00 -39.59 -0.32 -1.71 16 25 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 26 C -0.14 -2.82 10.05 -39.58 -0.40 -3.21 16 27 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 28 C -0.11 -2.47 8.71 -39.58 -0.34 -2.81 16 29 C 0.11 1.99 5.23 -3.49 -0.02 1.97 16 30 H 0.05 0.62 6.54 -51.93 -0.34 0.28 16 31 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.75 6.51 -51.93 -0.34 0.42 16 36 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.43 6.69 -51.93 -0.35 1.08 16 40 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 1.88 6.81 -51.93 -0.35 1.52 16 42 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 43 H 0.14 3.34 4.96 -52.49 -0.26 3.08 16 44 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 45 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 46 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 47 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 48 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.12 2.36 4.22 -51.93 -0.22 2.14 16 LS Contribution 367.09 15.07 5.53 5.53 Total: -1.00 -26.63 367.09 -10.53 -37.16 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -8.15 Total: 9.83 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -3.04 Total: -18.89 kcal Atomic # 7 Polarization: -33.96 SS G_CDS: 0.09 Total: -33.87 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: 0.06 Total: -13.78 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -26.63 -10.53 -37.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131275904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.112 kcal (2) G-P(sol) polarization free energy of solvation -26.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds