Wall clock time and date at job start Tue Mar 31 2020 11:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47031 * 2 1 4 4 H 1.09000 * 109.49824 * 55.06778 * 3 2 1 5 5 C 1.53035 * 109.49620 * 294.99995 * 3 2 1 6 6 C 1.53044 * 109.53652 * 178.68087 * 5 3 2 7 7 C 1.53190 * 109.30951 * 61.36861 * 6 5 3 8 8 H 1.09001 * 109.70650 * 65.22215 * 7 6 5 9 9 C 1.53006 * 109.58509 * 185.57459 * 7 6 5 10 10 N 1.46925 * 108.77750 * 305.36308 * 7 6 5 11 11 C 1.34770 * 120.63025 * 233.58835 * 10 7 6 12 12 O 1.21279 * 120.00162 * 3.73929 * 11 10 7 13 13 C 1.50707 * 119.99924 * 183.74145 * 11 10 7 14 14 H 1.08993 * 109.47176 * 59.99394 * 13 11 10 15 15 C 1.50697 * 109.46881 * 299.99885 * 13 11 10 16 16 H 1.07999 * 119.99904 * 125.31567 * 15 13 11 17 17 C 1.37881 * 120.00410 * 305.31615 * 15 13 11 18 18 N 1.31519 * 119.99434 * 5.69099 * 17 15 13 19 19 Si 1.86793 * 120.00438 * 185.69240 * 17 15 13 20 20 H 1.48498 * 109.47597 * 89.99721 * 19 17 15 21 21 H 1.48501 * 109.47315 * 209.99827 * 19 17 15 22 22 H 1.48505 * 109.47084 * 329.99642 * 19 17 15 23 23 C 1.50697 * 109.47008 * 180.02562 * 13 11 10 24 24 C 1.38231 * 120.00253 * 115.39041 * 23 13 11 25 25 C 1.38232 * 120.00153 * 179.97438 * 24 23 13 26 26 C 1.38235 * 120.00101 * 359.95300 * 25 24 23 27 27 C 1.38232 * 120.00055 * 359.97438 * 26 25 24 28 28 C 1.38237 * 119.99727 * 295.35931 * 23 13 11 29 29 C 1.46928 * 118.73582 * 53.86088 * 10 7 6 30 30 H 1.08992 * 109.47373 * 60.00294 * 1 2 3 31 31 H 1.09008 * 109.47139 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47165 * 299.99458 * 1 2 3 33 33 H 1.09003 * 109.47165 * 240.00542 * 2 1 3 34 34 H 1.09001 * 109.47257 * 120.00309 * 2 1 3 35 35 H 1.09003 * 109.45814 * 58.66787 * 5 3 2 36 36 H 1.08996 * 109.46649 * 298.70675 * 5 3 2 37 37 H 1.08995 * 109.49862 * 301.41362 * 6 5 3 38 38 H 1.09004 * 109.49522 * 181.31816 * 6 5 3 39 39 H 1.08999 * 109.47028 * 183.18553 * 9 7 6 40 40 H 1.08995 * 109.46992 * 303.19620 * 9 7 6 41 41 H 1.09004 * 109.47086 * 63.19328 * 9 7 6 42 42 H 0.96999 * 119.99734 * 180.02562 * 18 17 15 43 43 H 1.08002 * 119.99973 * 359.97438 * 24 23 13 44 44 H 1.08003 * 120.00086 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00109 * 179.72146 * 26 25 24 46 46 H 1.07997 * 120.00480 * 179.97438 * 27 26 25 47 47 H 1.07995 * 120.00219 * 0.02562 * 28 23 13 48 48 H 1.09003 * 109.58635 * 65.92941 * 29 10 7 49 49 H 1.08995 * 109.58540 * 186.35175 * 29 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 0.8424 5 6 1.6354 2.1273 -1.3074 6 6 2.1166 3.5801 -1.2945 7 6 3.6445 3.6067 -1.1874 8 1 4.0835 3.1698 -2.0844 9 6 4.1228 5.0520 -1.0342 10 7 4.0498 2.8263 -0.0104 11 6 4.8495 3.3672 0.9300 12 8 5.1865 4.5291 0.8442 13 6 5.3250 2.5282 2.0880 14 1 5.8972 1.6803 1.7116 15 6 4.1361 2.0261 2.8661 16 1 4.0165 0.9680 3.0463 17 6 3.2011 2.9175 3.3480 18 7 3.2852 4.1921 3.0348 19 14 1.8150 2.3150 4.4457 20 1 2.2441 2.3801 5.8658 21 1 0.6195 3.1738 4.2499 22 1 1.4793 0.9118 4.0939 23 6 6.1977 3.3638 2.9887 24 6 5.7942 3.6375 4.2822 25 6 6.5949 4.4035 5.1086 26 6 7.7996 4.8951 4.6417 27 6 8.2038 4.6203 3.3487 28 6 7.4019 3.8561 2.5215 29 6 3.5716 1.4431 0.1189 30 1 -0.3634 0.5137 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 0.5503 2.1051 -1.4083 36 1 2.0888 1.6020 -2.1480 37 1 1.6828 4.0994 -0.4400 38 1 1.8077 4.0738 -2.2159 39 1 5.2124 5.0740 -1.0150 40 1 3.7619 5.6451 -1.8744 41 1 3.7346 5.4664 -0.1037 42 1 2.6277 4.8193 3.3741 43 1 4.8534 3.2527 4.6472 44 1 6.2795 4.6176 6.1191 45 1 8.4231 5.4974 5.2859 46 1 9.1448 5.0047 2.9838 47 1 7.7172 3.6423 1.5110 48 1 4.0027 0.8318 -0.6739 49 1 3.8642 1.0446 1.0903 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131275904.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:50 Heat of formation + Delta-G solvation = -18.124132 kcal Electronic energy + Delta-G solvation = -28767.693251 eV Core-core repulsion = 25273.132183 eV Total energy + Delta-G solvation = -3494.561068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.27555 -39.71655 -38.20514 -35.93222 -35.18859 -33.49485 -32.47672 -31.31330 -31.17257 -29.02266 -28.21310 -25.81645 -24.91634 -23.83628 -23.06341 -22.82119 -21.54589 -20.85642 -19.71669 -18.54590 -17.34742 -17.12052 -16.64654 -16.43154 -15.79095 -15.67429 -15.54714 -15.33995 -15.22497 -14.61008 -14.40111 -14.25899 -14.06274 -14.02336 -13.68372 -13.61067 -13.25051 -13.01550 -12.96526 -12.91644 -12.74649 -12.58825 -12.48838 -12.18389 -11.96605 -11.80941 -11.75458 -11.72940 -11.51281 -11.40491 -11.27701 -11.12480 -10.96254 -10.41414 -9.55389 -9.40581 -9.02969 -8.95894 -8.06200 -6.17173 0.84081 0.93744 1.37264 1.43669 1.48100 2.35752 2.48044 2.76070 3.21054 3.32560 3.89411 3.97328 4.05842 4.12612 4.30892 4.34287 4.35853 4.45143 4.49377 4.52296 4.61731 4.66841 4.71752 4.77097 4.79826 4.90481 4.92133 4.98868 5.03649 5.04858 5.08341 5.14029 5.16526 5.23916 5.26143 5.32344 5.36045 5.43235 5.47913 5.56589 5.58014 5.64555 5.69712 5.74924 5.86782 5.96456 6.00377 6.27988 6.42485 6.52211 6.78666 7.14071 7.43840 8.09603 8.93088 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.006325 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.436371 B = 4425.617029 C = 5606.302122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.092 4.092 4 H 0.036 0.964 5 C -0.104 4.104 6 C -0.122 4.122 7 C 0.143 3.857 8 H 0.076 0.924 9 C -0.113 4.113 10 N -0.612 5.612 11 C 0.556 3.444 12 O -0.573 6.573 13 C 0.047 3.953 14 H 0.058 0.942 15 C -0.520 4.520 16 H 0.071 0.929 17 C 0.052 3.948 18 N -0.867 5.867 19 Si 0.918 3.082 20 H -0.279 1.279 21 H -0.299 1.299 22 H -0.257 1.257 23 C -0.038 4.038 24 C -0.085 4.085 25 C -0.157 4.157 26 C -0.141 4.141 27 C -0.142 4.142 28 C -0.128 4.128 29 C 0.108 3.892 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.033 0.967 33 H 0.081 0.919 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.033 0.967 42 H 0.253 0.747 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.138 0.862 46 H 0.134 0.866 47 H 0.102 0.898 48 H 0.064 0.936 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.981 -6.371 -6.910 9.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.112 4.112 4 H 0.055 0.945 5 C -0.141 4.141 6 C -0.160 4.160 7 C 0.040 3.960 8 H 0.094 0.906 9 C -0.171 4.171 10 N -0.345 5.345 11 C 0.347 3.653 12 O -0.453 6.453 13 C 0.025 3.975 14 H 0.076 0.924 15 C -0.558 4.558 16 H 0.089 0.911 17 C -0.152 4.152 18 N -0.502 5.502 19 Si 0.745 3.255 20 H -0.205 1.205 21 H -0.225 1.225 22 H -0.180 1.180 23 C -0.039 4.039 24 C -0.103 4.103 25 C -0.175 4.175 26 C -0.158 4.158 27 C -0.160 4.160 28 C -0.146 4.146 29 C -0.014 4.014 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.048 0.952 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.133 0.867 44 H 0.138 0.862 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.120 0.880 48 H 0.082 0.918 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.892 -5.568 -6.936 8.939 hybrid contribution -1.124 0.331 1.027 1.558 sum -2.016 -5.237 -5.909 8.149 Atomic orbital electron populations 1.21786 0.95576 1.01949 1.01344 1.21450 0.96144 0.94860 1.02451 1.21444 0.95516 0.96772 0.97452 0.94504 1.21564 1.01024 0.94230 0.97293 1.21905 0.94846 0.98115 1.01153 1.21197 0.94737 0.91960 0.88075 0.90630 1.21903 1.00764 0.95135 0.99260 1.47888 1.50080 1.14449 1.22086 1.20769 0.76334 0.87101 0.81065 1.90550 1.60121 1.18460 1.76190 1.18060 0.94810 0.93220 0.91360 0.92391 1.20713 1.06246 0.93500 1.35325 0.91076 1.25299 0.98555 0.94722 0.96599 1.70218 1.34901 1.02506 1.42549 0.86156 0.79986 0.79127 0.80240 1.20534 1.22537 1.18041 1.19974 0.93007 0.96345 0.94572 1.21368 0.98352 0.96497 0.94090 1.21344 0.95949 1.00194 1.00005 1.21181 0.96927 1.01362 0.96372 1.21177 1.00366 0.99908 0.94529 1.21016 0.95410 0.99540 0.98655 1.22141 0.93615 0.81855 1.03801 0.91724 0.91495 0.94783 0.90072 0.92562 0.91042 0.90229 0.95172 0.89629 0.93395 0.93350 0.94756 0.93734 0.86660 0.86199 0.84458 0.84820 0.87958 0.91750 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 9.67 71.98 0.70 -2.67 16 2 C -0.11 -2.76 5.41 30.59 0.17 -2.60 16 3 C -0.09 -2.89 2.35 -10.57 -0.02 -2.92 16 4 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.10 -2.76 4.95 30.62 0.15 -2.61 16 6 C -0.12 -3.83 5.37 30.67 0.16 -3.66 16 7 C 0.14 5.10 3.49 44.98 0.16 5.26 16 8 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 9 C -0.11 -4.54 7.60 71.98 0.55 -3.99 16 10 N -0.61 -24.76 2.97 -794.19 -2.36 -27.11 16 11 C 0.56 26.55 5.25 87.66 0.46 27.01 16 12 O -0.57 -30.64 10.54 -3.03 -0.03 -30.67 16 13 C 0.05 2.20 1.93 -13.03 -0.03 2.18 16 14 H 0.06 2.56 8.07 -2.39 -0.02 2.54 16 15 C -0.52 -24.74 5.15 25.60 0.13 -24.60 16 16 H 0.07 3.27 7.50 -2.91 -0.02 3.24 16 17 C 0.05 2.60 3.17 84.66 0.27 2.87 16 18 N -0.87 -47.24 10.43 21.45 0.22 -47.02 16 19 Si 0.92 40.37 29.53 68.60 2.03 42.40 16 20 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 21 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 22 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 23 C -0.04 -1.83 4.51 -19.87 -0.09 -1.92 16 24 C -0.09 -4.08 8.00 22.27 0.18 -3.91 16 25 C -0.16 -6.54 10.05 22.27 0.22 -6.32 16 26 C -0.14 -5.24 10.05 22.27 0.22 -5.01 16 27 C -0.14 -5.44 10.05 22.27 0.22 -5.22 16 28 C -0.13 -5.62 8.71 22.27 0.19 -5.43 16 29 C 0.11 3.75 5.23 86.51 0.45 4.20 16 30 H 0.06 1.30 6.54 -2.39 -0.02 1.29 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.07 1.71 6.51 -2.39 -0.02 1.69 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.09 2.20 8.14 -2.38 -0.02 2.19 16 39 H 0.05 2.07 6.69 -2.39 -0.02 2.05 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.59 16 41 H 0.03 1.67 6.81 -2.39 -0.02 1.65 16 42 H 0.25 13.95 8.31 -92.71 -0.77 13.18 16 43 H 0.12 5.91 4.96 -2.91 -0.01 5.90 16 44 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 45 H 0.14 4.06 8.06 -2.91 -0.02 4.03 16 46 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 48 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.10 3.99 4.22 -2.39 -0.01 3.98 16 Total: -1.00 -61.21 367.09 4.87 -56.34 By element: Atomic # 1 Polarization: 34.49 SS G_CDS: 0.91 Total: 35.40 kcal Atomic # 6 Polarization: -33.43 SS G_CDS: 4.10 Total: -29.33 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.13 Total: -74.13 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.03 Total: -30.67 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -61.21 4.87 -56.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131275904.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.213 kcal (2) G-P(sol) polarization free energy of solvation -61.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds