Wall clock time and date at job start Tue Mar 31 2020 11:08:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99957 * 2 1 4 4 C 1.50697 * 120.00054 * 179.97438 * 2 1 3 5 5 O 1.42903 * 109.47103 * 0.02562 * 4 2 1 6 6 C 1.35899 * 116.99930 * 180.02562 * 5 4 2 7 7 C 1.38747 * 120.05586 * 359.97438 * 6 5 4 8 8 C 1.38125 * 119.94590 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6 10 10 C 1.38243 * 120.11362 * 0.02562 * 9 8 7 11 11 C 1.38163 * 120.05438 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.02715 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47356 * 260.02460 * 12 11 10 14 14 C 1.46850 * 110.99853 * 45.78872 * 13 12 11 15 15 C 1.53032 * 109.52408 * 185.83885 * 14 13 12 16 16 C 1.53125 * 109.28224 * 300.82444 * 15 14 13 17 17 C 1.50697 * 109.57661 * 177.58786 * 16 15 14 18 18 H 1.08002 * 120.00070 * 240.28246 * 17 16 15 19 19 C 1.37875 * 120.00058 * 60.28765 * 17 16 15 20 20 N 1.31520 * 119.99779 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47097 * 60.00360 * 21 19 17 23 23 H 1.48507 * 109.47094 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47294 * 299.99871 * 21 19 17 25 25 C 1.53120 * 109.15696 * 57.64815 * 16 15 14 26 26 C 1.46843 * 111.00119 * 170.00068 * 13 12 11 27 27 H 1.08006 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99971 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46720 * 239.99939 * 3 2 1 30 30 H 1.08999 * 109.47072 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47395 * 120.00058 * 3 2 1 32 32 H 1.08998 * 109.47303 * 239.99938 * 4 2 1 33 33 H 1.08995 * 109.46897 * 120.00018 * 4 2 1 34 34 H 1.08000 * 120.03046 * 0.02562 * 7 6 5 35 35 H 1.07993 * 119.97844 * 179.72247 * 8 7 6 36 36 H 1.08004 * 119.94567 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.97538 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.47162 * 20.02710 * 12 11 10 39 39 H 1.09005 * 109.46612 * 140.02285 * 12 11 10 40 40 H 1.09001 * 109.46302 * 305.85829 * 14 13 12 41 41 H 1.09000 * 109.45975 * 65.82454 * 14 13 12 42 42 H 1.08995 * 109.50845 * 180.88121 * 15 14 13 43 43 H 1.09004 * 109.50515 * 60.76040 * 15 14 13 44 44 H 1.09000 * 109.52135 * 297.75019 * 16 15 14 45 45 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.50141 * 182.40752 * 25 16 15 47 47 H 1.09003 * 109.53318 * 62.31695 * 25 16 15 48 48 H 1.08996 * 109.46313 * 294.17541 * 26 13 12 49 49 H 1.08996 * 109.46145 * 54.15813 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6543 -3.6470 0.0015 7 6 3.0297 -3.8302 0.0020 8 6 3.5552 -5.1075 0.0026 9 6 2.7117 -6.2034 0.0030 10 6 1.3410 -6.0236 0.0025 11 6 0.8104 -4.7479 0.0020 12 6 -0.6839 -4.5526 0.0008 13 7 -1.1373 -4.2514 -1.3636 14 6 -0.5239 -5.1652 -2.3357 15 6 -0.9026 -4.7325 -3.7539 16 6 -2.4269 -4.7517 -3.8985 17 6 -2.8098 -4.2699 -5.2741 18 1 -3.4309 -3.3934 -5.3858 19 6 -2.3673 -4.9481 -6.3900 20 7 -1.6106 -6.0152 -6.2539 21 14 -2.8425 -4.3513 -8.0951 22 1 -2.3399 -2.9680 -8.2932 23 1 -2.2434 -5.2462 -9.1176 24 1 -4.3213 -4.3648 -8.2300 25 6 -3.0434 -3.8293 -2.8431 26 6 -2.6027 -4.2882 -1.4513 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.6902 1.3628 -0.8900 30 1 1.3552 2.1336 -0.0005 31 1 2.6902 1.3629 0.8900 32 1 2.6902 -1.3624 0.8906 33 1 2.6901 -1.3632 -0.8893 34 1 3.6888 -2.9746 0.0021 35 1 4.6256 -5.2507 -0.0015 36 1 3.1244 -7.2014 0.0030 37 1 0.6843 -6.8810 0.0024 38 1 -1.1696 -5.4629 0.3524 39 1 -0.9426 -3.7246 0.6608 40 1 0.5601 -5.1388 -2.2252 41 1 -0.8824 -6.1790 -2.1575 42 1 -0.4601 -5.4200 -4.4746 43 1 -0.5324 -3.7238 -3.9377 44 1 -2.7937 -5.7678 -3.7531 45 1 -1.2996 -6.4925 -7.0390 46 1 -4.1303 -3.8717 -2.9131 47 1 -2.7075 -2.8062 -3.0124 48 1 -2.9514 -5.3061 -1.2773 49 1 -3.0284 -3.6247 -0.6986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138665737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:19 Heat of formation + Delta-G solvation = 1.070610 kcal Electronic energy + Delta-G solvation = -27029.759184 eV Core-core repulsion = 23536.030462 eV Total energy + Delta-G solvation = -3493.728722 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.33822 -38.29297 -37.39332 -35.11860 -34.12554 -32.07660 -30.33682 -29.81886 -29.63299 -27.36503 -26.93477 -26.39506 -24.31476 -22.25621 -22.07818 -21.70414 -20.54903 -18.61426 -18.46122 -17.85629 -16.33295 -16.08067 -15.96898 -15.63575 -15.11496 -14.82377 -14.42727 -14.36619 -13.87183 -13.60574 -13.54335 -13.42181 -12.91900 -12.79144 -12.60999 -12.59280 -12.17178 -12.06601 -11.82910 -11.58999 -11.33842 -11.20127 -11.14690 -11.08929 -10.87858 -10.67608 -10.64735 -10.35354 -10.10921 -9.87654 -9.33150 -9.08657 -8.91287 -8.78245 -8.57091 -8.21438 -8.04215 -7.54010 -5.90023 -3.95041 1.37379 1.54793 2.19829 3.19782 3.37033 3.41181 3.44269 3.80644 4.50730 4.63494 4.70707 4.80032 4.92622 5.03798 5.08154 5.11887 5.20325 5.32482 5.36665 5.40055 5.45293 5.48325 5.65792 5.71299 5.77951 5.84788 5.87481 5.98226 6.02112 6.12998 6.23959 6.32540 6.39260 6.46536 6.51677 6.61347 6.61794 6.73305 6.73713 6.75253 6.91566 6.96134 7.18093 7.28338 7.53261 7.56697 7.73220 7.83298 7.93881 8.14917 8.25849 8.56804 9.08408 9.68702 11.16044 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.003998 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.798842 B = 7002.119444 C = 8053.947957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.155 4.155 3 C -0.110 4.110 4 C 0.098 3.902 5 O -0.293 6.293 6 C 0.152 3.848 7 C -0.214 4.214 8 C -0.085 4.085 9 C -0.159 4.159 10 C -0.075 4.075 11 C -0.105 4.105 12 C 0.102 3.898 13 N -0.523 5.523 14 C 0.058 3.942 15 C -0.102 4.102 16 C 0.049 3.951 17 C -0.509 4.509 18 H 0.053 0.947 19 C 0.061 3.939 20 N -0.892 5.892 21 Si 0.888 3.112 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 C -0.105 4.105 26 C 0.061 3.939 27 H 0.096 0.904 28 H 0.116 0.884 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.124 0.876 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.032 0.968 39 H 0.077 0.923 40 H 0.057 0.943 41 H 0.017 0.983 42 H 0.090 0.910 43 H 0.040 0.960 44 H 0.019 0.981 45 H 0.259 0.741 46 H 0.048 0.952 47 H 0.056 0.944 48 H 0.022 0.978 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.934 6.277 16.443 20.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.155 4.155 3 C -0.167 4.167 4 C 0.023 3.977 5 O -0.205 6.205 6 C 0.106 3.894 7 C -0.233 4.233 8 C -0.103 4.103 9 C -0.178 4.178 10 C -0.094 4.094 11 C -0.106 4.106 12 C -0.025 4.025 13 N -0.248 5.248 14 C -0.069 4.069 15 C -0.140 4.140 16 C 0.030 3.970 17 C -0.548 4.548 18 H 0.071 0.929 19 C -0.140 4.140 20 N -0.531 5.531 21 Si 0.717 3.283 22 H -0.204 1.204 23 H -0.214 1.214 24 H -0.204 1.204 25 C -0.143 4.143 26 C -0.066 4.066 27 H 0.115 0.885 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.142 0.858 35 H 0.138 0.862 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.050 0.950 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.108 0.892 43 H 0.059 0.941 44 H 0.037 0.963 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.040 0.960 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.954 6.693 16.209 20.165 hybrid contribution -0.134 -0.566 -0.869 1.046 sum 9.820 6.126 15.341 19.217 Atomic orbital electron populations 1.23878 0.95335 1.02753 0.97347 1.21431 0.95956 0.93631 1.04516 1.20739 1.00266 0.93702 1.01983 1.21403 0.91118 0.84054 1.01109 1.86135 1.34737 1.11606 1.88061 1.18695 0.91215 0.84343 0.95187 1.21192 0.93759 0.98511 1.09842 1.20863 0.99483 0.91941 0.98000 1.20971 0.93342 0.98758 1.04696 1.20933 0.95295 0.95725 0.97429 1.19154 0.95501 0.90827 1.05103 1.20876 0.89699 0.99512 0.92434 1.62126 1.07368 1.52691 1.02571 1.22290 0.97703 0.92441 0.94441 1.21626 0.99655 1.00725 0.91979 1.18673 0.91689 0.94206 0.92424 1.21184 1.30843 1.11851 0.90873 0.92885 1.24958 0.95175 0.94952 0.98884 1.69879 1.35409 1.18503 1.29359 0.86720 0.78676 0.78633 0.84307 1.20360 1.21410 1.20401 1.21658 0.98684 1.00834 0.93091 1.22107 0.86987 0.98374 0.99161 0.88539 0.86565 0.91606 0.91449 0.91843 0.91690 0.91303 0.85806 0.86170 0.86122 0.85716 0.94974 0.90444 0.92413 0.96426 0.89226 0.94076 0.96285 0.93145 0.93344 0.92521 0.95996 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 13.68 29.01 0.40 -1.50 16 2 C -0.16 -1.72 6.05 -101.07 -0.61 -2.34 16 3 C -0.11 -0.91 10.12 36.01 0.36 -0.54 16 4 C 0.10 1.13 5.16 36.00 0.19 1.32 16 5 O -0.29 -4.28 7.77 -19.42 -0.15 -4.43 16 6 C 0.15 2.22 6.66 -39.22 -0.26 1.96 16 7 C -0.21 -2.70 9.04 -39.43 -0.36 -3.05 16 8 C -0.08 -0.99 10.04 -39.60 -0.40 -1.39 16 9 C -0.16 -1.95 10.04 -39.56 -0.40 -2.35 16 10 C -0.08 -1.03 8.64 -39.61 -0.34 -1.37 16 11 C -0.10 -1.59 3.70 -104.47 -0.39 -1.97 16 12 C 0.10 1.62 5.07 -4.98 -0.03 1.59 16 13 N -0.52 -9.83 4.80 -236.12 -1.13 -10.96 16 14 C 0.06 1.22 4.80 -3.83 -0.02 1.20 16 15 C -0.10 -2.51 5.12 -26.65 -0.14 -2.65 16 16 C 0.05 1.25 2.16 -91.65 -0.20 1.05 16 17 C -0.51 -14.36 8.56 -34.44 -0.29 -14.65 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 20 N -0.89 -25.98 11.37 55.43 0.63 -25.35 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C -0.10 -2.29 5.32 -26.65 -0.14 -2.43 16 26 C 0.06 1.15 5.42 -3.84 -0.02 1.13 16 27 H 0.10 1.00 7.83 -52.48 -0.41 0.59 16 28 H 0.12 1.65 6.84 -52.49 -0.36 1.29 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.51 7.78 -51.93 -0.40 0.11 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.07 0.77 7.66 -51.93 -0.40 0.37 16 34 H 0.12 1.28 6.30 -52.49 -0.33 0.95 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 37 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 38 H 0.03 0.48 7.94 -51.93 -0.41 0.07 16 39 H 0.08 1.18 7.85 -51.93 -0.41 0.77 16 40 H 0.06 1.18 6.03 -51.93 -0.31 0.87 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 43 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 49 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 LS Contribution 385.24 15.07 5.81 5.81 Total: -1.00 -30.16 385.24 -10.97 -41.13 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.37 Total: 1.43 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.74 Total: -24.36 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.50 Total: -36.31 kcal Atomic # 8 Polarization: -4.28 SS G_CDS: -0.15 Total: -4.43 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.16 -10.97 -41.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138665737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.205 kcal (2) G-P(sol) polarization free energy of solvation -30.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds