Wall clock time and date at job start Tue Mar 31 2020 11:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99957 * 2 1 4 4 C 1.50697 * 120.00054 * 179.97438 * 2 1 3 5 5 O 1.42903 * 109.47103 * 0.02562 * 4 2 1 6 6 C 1.35899 * 116.99930 * 180.02562 * 5 4 2 7 7 C 1.38747 * 120.05586 * 359.97438 * 6 5 4 8 8 C 1.38125 * 119.94590 * 180.02562 * 7 6 5 9 9 C 1.38289 * 120.05159 * 359.97438 * 8 7 6 10 10 C 1.38243 * 120.11362 * 0.02562 * 9 8 7 11 11 C 1.38163 * 120.05438 * 359.97438 * 10 9 8 12 12 C 1.50708 * 120.02715 * 179.97438 * 11 10 9 13 13 N 1.46895 * 109.47356 * 260.02460 * 12 11 10 14 14 C 1.46850 * 110.99853 * 45.78872 * 13 12 11 15 15 C 1.53032 * 109.52408 * 185.83885 * 14 13 12 16 16 C 1.53125 * 109.28224 * 300.82444 * 15 14 13 17 17 C 1.50697 * 109.57661 * 177.58786 * 16 15 14 18 18 H 1.08002 * 120.00070 * 240.28246 * 17 16 15 19 19 C 1.37875 * 120.00058 * 60.28765 * 17 16 15 20 20 N 1.31520 * 119.99779 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00018 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47097 * 60.00360 * 21 19 17 23 23 H 1.48507 * 109.47094 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47294 * 299.99871 * 21 19 17 25 25 C 1.53120 * 109.15696 * 57.64815 * 16 15 14 26 26 C 1.46843 * 111.00119 * 170.00068 * 13 12 11 27 27 H 1.08006 * 120.00021 * 0.02562 * 1 2 3 28 28 H 1.07994 * 119.99971 * 180.02562 * 1 2 3 29 29 H 1.09005 * 109.46720 * 239.99939 * 3 2 1 30 30 H 1.08999 * 109.47072 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.47395 * 120.00058 * 3 2 1 32 32 H 1.08998 * 109.47303 * 239.99938 * 4 2 1 33 33 H 1.08995 * 109.46897 * 120.00018 * 4 2 1 34 34 H 1.08000 * 120.03046 * 0.02562 * 7 6 5 35 35 H 1.07993 * 119.97844 * 179.72247 * 8 7 6 36 36 H 1.08004 * 119.94567 * 179.97438 * 9 8 7 37 37 H 1.08001 * 119.97538 * 179.97438 * 10 9 8 38 38 H 1.09002 * 109.47162 * 20.02710 * 12 11 10 39 39 H 1.09005 * 109.46612 * 140.02285 * 12 11 10 40 40 H 1.09001 * 109.46302 * 305.85829 * 14 13 12 41 41 H 1.09000 * 109.45975 * 65.82454 * 14 13 12 42 42 H 1.08995 * 109.50845 * 180.88121 * 15 14 13 43 43 H 1.09004 * 109.50515 * 60.76040 * 15 14 13 44 44 H 1.09000 * 109.52135 * 297.75019 * 16 15 14 45 45 H 0.97002 * 120.00021 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.50141 * 182.40752 * 25 16 15 47 47 H 1.09003 * 109.53318 * 62.31695 * 25 16 15 48 48 H 1.08996 * 109.46313 * 294.17541 * 26 13 12 49 49 H 1.08996 * 109.46145 * 54.15813 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 8 1.1349 -2.3913 0.0005 6 6 1.6543 -3.6470 0.0015 7 6 3.0297 -3.8302 0.0020 8 6 3.5552 -5.1075 0.0026 9 6 2.7117 -6.2034 0.0030 10 6 1.3410 -6.0236 0.0025 11 6 0.8104 -4.7479 0.0020 12 6 -0.6839 -4.5526 0.0008 13 7 -1.1373 -4.2514 -1.3636 14 6 -0.5239 -5.1652 -2.3357 15 6 -0.9026 -4.7325 -3.7539 16 6 -2.4269 -4.7517 -3.8985 17 6 -2.8098 -4.2699 -5.2741 18 1 -3.4309 -3.3934 -5.3858 19 6 -2.3673 -4.9481 -6.3900 20 7 -1.6106 -6.0152 -6.2539 21 14 -2.8425 -4.3513 -8.0951 22 1 -2.3399 -2.9680 -8.2932 23 1 -2.2434 -5.2462 -9.1176 24 1 -4.3213 -4.3648 -8.2300 25 6 -3.0434 -3.8293 -2.8431 26 6 -2.6027 -4.2882 -1.4513 27 1 -0.5400 0.9354 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 2.6902 1.3628 -0.8900 30 1 1.3552 2.1336 -0.0005 31 1 2.6902 1.3629 0.8900 32 1 2.6902 -1.3624 0.8906 33 1 2.6901 -1.3632 -0.8893 34 1 3.6888 -2.9746 0.0021 35 1 4.6256 -5.2507 -0.0015 36 1 3.1244 -7.2014 0.0030 37 1 0.6843 -6.8810 0.0024 38 1 -1.1696 -5.4629 0.3524 39 1 -0.9426 -3.7246 0.6608 40 1 0.5601 -5.1388 -2.2252 41 1 -0.8824 -6.1790 -2.1575 42 1 -0.4601 -5.4200 -4.4746 43 1 -0.5324 -3.7238 -3.9377 44 1 -2.7937 -5.7678 -3.7531 45 1 -1.2996 -6.4925 -7.0390 46 1 -4.1303 -3.8717 -2.9131 47 1 -2.7075 -2.8062 -3.0124 48 1 -2.9514 -5.3061 -1.2773 49 1 -3.0284 -3.6247 -0.6986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138665737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:18 Heat of formation + Delta-G solvation = -14.287475 kcal Electronic energy + Delta-G solvation = -27030.425161 eV Core-core repulsion = 23536.030462 eV Total energy + Delta-G solvation = -3494.394698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.38132 -39.73890 -38.54246 -35.98417 -35.88846 -33.79452 -31.81568 -31.37038 -30.85411 -28.30056 -27.95489 -27.77904 -25.97660 -23.79822 -23.34337 -23.19357 -21.85412 -20.31431 -19.48504 -18.84309 -18.43272 -17.14302 -17.05154 -16.72722 -16.65730 -16.22781 -15.75551 -15.66976 -15.09306 -14.99690 -14.74352 -14.43423 -14.36190 -14.32862 -14.11018 -13.58886 -13.43195 -13.41372 -13.21233 -12.93136 -12.81089 -12.58941 -12.46652 -12.30066 -12.24106 -12.04527 -12.02540 -11.99808 -11.86919 -11.58305 -11.33287 -10.80642 -10.65518 -10.36755 -9.94502 -9.78954 -9.15465 -8.95844 -8.06950 -6.20496 0.37331 0.55429 1.31907 1.40585 1.42464 1.49898 2.26910 2.44092 2.76644 3.19125 3.27040 3.75123 3.80222 3.95786 4.15653 4.22019 4.23762 4.25115 4.30419 4.32422 4.36969 4.44148 4.47638 4.55313 4.63636 4.68885 4.72437 4.77649 4.86665 4.87621 4.91361 4.97586 5.06812 5.10159 5.12799 5.16222 5.24173 5.33219 5.44886 5.51928 5.57444 5.61929 5.63457 5.70672 5.83305 5.99965 6.00665 6.03847 6.32945 6.36497 6.41598 6.59067 6.90529 7.46856 8.97521 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.003998 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.798842 B = 7002.119444 C = 8053.947957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.150 4.150 3 C -0.108 4.108 4 C 0.090 3.910 5 O -0.313 6.313 6 C 0.135 3.865 7 C -0.218 4.218 8 C -0.082 4.082 9 C -0.164 4.164 10 C -0.086 4.086 11 C -0.131 4.131 12 C 0.108 3.892 13 N -0.529 5.529 14 C 0.079 3.921 15 C -0.090 4.090 16 C 0.046 3.954 17 C -0.535 4.535 18 H 0.050 0.950 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.953 3.047 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.271 1.271 25 C -0.097 4.097 26 C 0.067 3.933 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.146 0.854 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.128 0.872 38 H 0.041 0.959 39 H 0.082 0.918 40 H 0.062 0.938 41 H 0.011 0.989 42 H 0.058 0.942 43 H 0.022 0.978 44 H -0.011 1.011 45 H 0.260 0.740 46 H 0.054 0.946 47 H 0.047 0.953 48 H 0.022 0.978 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.367 7.161 17.310 21.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.150 4.150 3 C -0.165 4.165 4 C 0.016 3.984 5 O -0.227 6.227 6 C 0.088 3.912 7 C -0.237 4.237 8 C -0.100 4.100 9 C -0.182 4.182 10 C -0.105 4.105 11 C -0.132 4.132 12 C -0.019 4.019 13 N -0.254 5.254 14 C -0.049 4.049 15 C -0.129 4.129 16 C 0.028 3.972 17 C -0.573 4.573 18 H 0.068 0.932 19 C -0.186 4.186 20 N -0.557 5.557 21 Si 0.778 3.222 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.196 1.196 25 C -0.135 4.135 26 C -0.061 4.061 27 H 0.128 0.872 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.105 0.895 33 H 0.090 0.910 34 H 0.163 0.837 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.146 0.854 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.081 0.919 41 H 0.029 0.971 42 H 0.077 0.923 43 H 0.040 0.960 44 H 0.007 0.993 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.041 0.959 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.383 7.585 17.094 21.893 hybrid contribution -0.514 -0.849 -1.113 1.491 sum 10.869 6.735 15.981 20.467 Atomic orbital electron populations 1.23833 0.95978 1.02227 0.99665 1.21785 0.95876 0.94758 1.02594 1.20789 1.00431 0.92103 1.03142 1.21649 0.91110 0.83442 1.02241 1.86115 1.36154 1.12174 1.88221 1.18923 0.92176 0.84282 0.95777 1.21500 0.93197 0.99845 1.09116 1.21280 1.01086 0.91329 0.96286 1.21301 0.92789 1.00241 1.03829 1.21103 0.96365 0.95381 0.97653 1.19205 0.94982 0.91798 1.07219 1.20842 0.90773 0.99997 0.90247 1.62038 1.07199 1.52164 1.04039 1.21936 0.98047 0.92239 0.92670 1.21375 0.98837 0.98651 0.93993 1.18639 0.92396 0.93235 0.92972 1.21555 1.31196 1.12023 0.92482 0.93175 1.25741 0.95039 0.95053 1.02724 1.70022 1.35995 1.19360 1.30335 0.85698 0.78660 0.78223 0.79590 1.19832 1.20819 1.19569 1.21517 0.98820 0.99288 0.93863 1.22043 0.87242 0.98952 0.97837 0.87171 0.89178 0.90909 0.90786 0.90035 0.89486 0.90987 0.83660 0.83099 0.83874 0.85375 0.94123 0.89976 0.91918 0.97094 0.92315 0.95961 0.99326 0.93117 0.92711 0.93394 0.95933 0.89678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.35 13.68 67.78 0.93 -3.42 16 2 C -0.15 -3.16 6.05 -16.49 -0.10 -3.26 16 3 C -0.11 -1.54 10.12 71.24 0.72 -0.82 16 4 C 0.09 1.95 5.16 71.24 0.37 2.32 16 5 O -0.31 -9.03 7.77 -92.41 -0.72 -9.75 16 6 C 0.13 3.82 6.66 22.50 0.15 3.97 16 7 C -0.22 -5.03 9.04 22.36 0.20 -4.83 16 8 C -0.08 -1.69 10.04 22.25 0.22 -1.47 16 9 C -0.16 -3.66 10.04 22.28 0.22 -3.43 16 10 C -0.09 -2.29 8.64 22.25 0.19 -2.10 16 11 C -0.13 -3.89 3.70 -19.77 -0.07 -3.96 16 12 C 0.11 3.38 5.07 85.56 0.43 3.82 16 13 N -0.53 -19.97 4.80 -900.95 -4.32 -24.30 16 14 C 0.08 3.35 4.80 86.32 0.41 3.77 16 15 C -0.09 -4.64 5.12 30.65 0.16 -4.48 16 16 C 0.05 2.45 2.16 -11.46 -0.02 2.43 16 17 C -0.53 -30.92 8.56 25.60 0.22 -30.70 16 18 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 19 C 0.01 0.73 5.31 84.65 0.45 1.18 16 20 N -0.92 -54.77 11.37 21.45 0.24 -54.53 16 21 Si 0.95 45.04 29.54 68.60 2.03 47.07 16 22 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 25 C -0.10 -4.30 5.32 30.65 0.16 -4.13 16 26 C 0.07 2.49 5.42 86.33 0.47 2.96 16 27 H 0.11 2.24 7.83 -2.91 -0.02 2.22 16 28 H 0.09 2.65 6.84 -2.91 -0.02 2.63 16 29 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 0.96 7.78 -2.39 -0.02 0.95 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.09 1.48 7.66 -2.39 -0.02 1.46 16 33 H 0.07 1.50 7.66 -2.39 -0.02 1.48 16 34 H 0.15 2.60 6.30 -2.91 -0.02 2.58 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.13 3.18 8.04 -2.91 -0.02 3.15 16 38 H 0.04 1.19 7.94 -2.39 -0.02 1.17 16 39 H 0.08 2.48 7.85 -2.38 -0.02 2.46 16 40 H 0.06 2.60 6.03 -2.39 -0.01 2.58 16 41 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 3.37 6.17 -2.39 -0.01 3.35 16 43 H 0.02 1.18 8.14 -2.39 -0.02 1.16 16 44 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 47 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 48 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 Total: -1.00 -66.69 385.24 3.24 -63.45 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.90 Total: 20.22 kcal Atomic # 6 Polarization: -47.27 SS G_CDS: 5.12 Total: -42.16 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -4.08 Total: -78.83 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -0.72 Total: -9.75 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -66.69 3.24 -63.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138665737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.162 kcal (2) G-P(sol) polarization free energy of solvation -66.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds