Wall clock time and date at job start Tue Mar 31 2020 11:46:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 H 1.08994 * 109.47230 * 302.51706 * 3 2 1 5 5 C 1.50702 * 109.47107 * 182.51491 * 3 2 1 6 6 H 1.08003 * 119.99986 * 243.31286 * 5 3 2 7 7 C 1.37872 * 119.99998 * 63.31864 * 5 3 2 8 8 N 1.31512 * 120.00253 * 198.71916 * 7 5 3 9 9 Si 1.86796 * 120.00103 * 18.71668 * 7 5 3 10 10 H 1.48495 * 109.47306 * 95.74150 * 9 7 5 11 11 H 1.48498 * 109.47407 * 215.74342 * 9 7 5 12 12 H 1.48499 * 109.47237 * 335.74201 * 9 7 5 13 13 N 1.46501 * 109.47002 * 62.51494 * 3 2 1 14 14 C 1.34781 * 120.00250 * 265.75169 * 13 3 2 15 15 O 1.21281 * 119.99494 * 354.70584 * 14 13 3 16 16 C 1.50693 * 119.99962 * 174.70224 * 14 13 3 17 17 C 1.53005 * 109.46961 * 185.14838 * 16 14 13 18 18 C 1.50691 * 112.84934 * 293.75254 * 17 16 14 19 19 C 1.38257 * 120.00060 * 121.48432 * 18 17 16 20 20 C 1.38212 * 120.00398 * 179.97438 * 19 18 17 21 21 C 1.38262 * 119.99655 * 0.02587 * 20 19 18 22 22 C 1.38207 * 120.00058 * 359.95066 * 21 20 19 23 23 C 1.50703 * 119.99737 * 180.02562 * 22 21 20 24 24 C 1.38211 * 120.00228 * 301.20693 * 18 17 16 25 25 C 1.53779 * 113.61323 * 162.44547 * 17 16 14 26 26 C 1.53781 * 87.08332 * 270.88814 * 25 17 16 27 27 C 1.53784 * 87.08057 * 334.56771 * 26 25 17 28 28 H 1.09000 * 109.47521 * 303.04049 * 1 2 3 29 29 H 1.08998 * 109.47512 * 63.04335 * 1 2 3 30 30 H 1.08996 * 109.46792 * 183.04027 * 1 2 3 31 31 H 1.09001 * 109.47305 * 240.00637 * 2 1 3 32 32 H 1.09002 * 109.47311 * 120.00042 * 2 1 3 33 33 H 0.96997 * 120.00649 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00231 * 85.74912 * 13 3 2 35 35 H 1.09000 * 109.47595 * 305.15031 * 16 14 13 36 36 H 1.09007 * 109.47002 * 65.15295 * 16 14 13 37 37 H 1.08004 * 119.99694 * 359.97438 * 19 18 17 38 38 H 1.08003 * 120.00069 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.99782 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47099 * 94.99184 * 23 22 21 41 41 H 1.09004 * 109.47114 * 214.99232 * 23 22 21 42 42 H 1.08996 * 109.47275 * 334.98893 * 23 22 21 43 43 H 1.08004 * 120.00318 * 0.02562 * 24 18 17 44 44 H 1.09007 * 113.61750 * 25.43278 * 25 17 16 45 45 H 1.08996 * 113.61417 * 156.33888 * 25 17 16 46 46 H 1.09000 * 113.61481 * 220.02309 * 26 25 17 47 47 H 1.09000 * 113.69198 * 89.12602 * 26 25 17 48 48 H 1.08999 * 113.61797 * 270.89003 * 27 26 25 49 49 H 1.09002 * 113.61561 * 139.98114 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6402 1.9692 -0.8665 5 6 3.5457 1.4431 -0.0623 6 1 4.1199 1.8511 0.7563 7 6 4.1901 0.9228 -1.1645 8 7 5.4576 0.5812 -1.0847 9 14 3.2631 0.7032 -2.7713 10 1 3.5040 1.8784 -3.6465 11 1 3.7386 -0.5274 -3.4530 12 1 1.8095 0.5839 -2.4918 13 7 1.6017 2.1154 1.2253 14 6 0.4662 2.8416 1.2263 15 8 -0.1417 3.0177 0.1917 16 6 -0.0480 3.4344 2.5127 17 6 -1.4053 4.0950 2.2632 18 6 -1.3140 5.2956 1.3571 19 6 -2.0337 5.3275 0.1771 20 6 -1.9504 6.4289 -0.6537 21 6 -1.1469 7.4986 -0.3050 22 6 -0.4278 7.4670 0.8749 23 6 0.4475 8.6333 1.2553 24 6 -0.5153 6.3674 1.7085 25 6 -2.2117 4.3500 3.5475 26 6 -2.8028 2.9425 3.3622 27 6 -2.5089 3.1023 1.8612 28 1 -0.3634 0.5603 0.8615 29 1 -0.3634 0.4658 -0.9160 30 1 -0.3633 -1.0262 0.0545 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9110 0.2148 -1.8600 34 1 2.1286 2.0383 2.0361 35 1 -0.1590 2.6461 3.2573 36 1 0.6580 4.1810 2.8765 37 1 -2.6610 4.4917 -0.0955 38 1 -2.5123 6.4536 -1.5758 39 1 -1.0814 8.3591 -0.9544 40 1 -0.1055 9.3031 1.9137 41 1 1.3356 8.2680 1.7711 42 1 0.7457 9.1723 0.3560 43 1 0.0438 6.3444 2.6323 44 1 -1.5928 4.4497 4.4392 45 1 -2.9471 5.1486 3.4500 46 1 -3.8659 2.8812 3.5948 47 1 -2.2189 2.1558 3.8401 48 1 -3.3254 3.5599 1.3026 49 1 -2.1298 2.1947 1.3914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185093693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:42 Heat of formation + Delta-G solvation = -6.693992 kcal Electronic energy + Delta-G solvation = -27476.814763 eV Core-core repulsion = 23982.749342 eV Total energy + Delta-G solvation = -3494.065420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.67214 -38.71039 -37.81847 -35.17423 -32.57702 -32.33508 -31.62300 -31.13964 -29.23584 -27.27677 -27.03122 -25.50391 -24.44778 -22.68123 -21.69966 -21.03801 -20.61607 -19.52293 -18.15571 -17.16134 -16.75588 -15.87018 -15.71824 -15.30373 -15.09900 -14.72480 -14.65587 -13.95503 -13.84109 -13.68364 -13.26016 -13.08523 -12.97882 -12.72036 -12.65323 -12.33758 -12.16324 -11.92701 -11.88462 -11.80188 -11.58547 -11.46298 -11.21013 -10.97948 -10.90741 -10.82625 -10.65268 -10.44571 -10.20395 -10.01372 -9.92761 -9.62435 -9.40376 -8.97249 -8.53666 -8.43663 -8.27230 -7.95628 -6.21439 -4.15606 1.61282 1.63559 3.27739 3.37617 3.41061 3.45500 3.95031 4.01577 4.37674 4.57935 4.64353 4.76010 4.85843 4.99724 5.01092 5.11946 5.15108 5.31204 5.42581 5.43552 5.54684 5.59465 5.63279 5.72529 5.74686 5.78245 5.81490 5.85257 5.87283 5.90215 5.98962 6.02879 6.19175 6.22250 6.27136 6.28541 6.35314 6.43936 6.68601 6.72219 6.75102 6.77444 6.91745 6.94572 7.00848 7.25764 7.36137 7.42193 7.63948 8.23228 8.63476 8.83036 9.10078 9.45795 10.90886 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.004522 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.340514 B = 6190.606971 C = 7177.459777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.129 4.129 3 C 0.244 3.756 4 H 0.050 0.950 5 C -0.540 4.540 6 H 0.076 0.924 7 C 0.085 3.915 8 N -0.884 5.884 9 Si 0.860 3.140 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.251 1.251 13 N -0.707 5.707 14 C 0.505 3.495 15 O -0.539 6.539 16 C -0.120 4.120 17 C -0.023 4.023 18 C -0.040 4.040 19 C -0.095 4.095 20 C -0.120 4.120 21 C -0.130 4.130 22 C -0.091 4.091 23 C -0.111 4.111 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.145 4.145 27 C -0.124 4.124 28 H 0.045 0.955 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.266 0.734 34 H 0.391 0.609 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.115 0.885 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.550 9.722 8.945 20.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.168 4.168 3 C 0.140 3.860 4 H 0.068 0.932 5 C -0.577 4.577 6 H 0.094 0.906 7 C -0.120 4.120 8 N -0.520 5.520 9 Si 0.686 3.314 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.175 1.175 13 N -0.355 5.355 14 C 0.290 3.710 15 O -0.417 6.417 16 C -0.160 4.160 17 C -0.023 4.023 18 C -0.040 4.040 19 C -0.112 4.112 20 C -0.138 4.138 21 C -0.148 4.148 22 C -0.091 4.091 23 C -0.168 4.168 24 C -0.138 4.138 25 C -0.163 4.163 26 C -0.183 4.183 27 C -0.161 4.161 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.224 0.776 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.133 0.867 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.084 0.916 47 H 0.098 0.902 48 H 0.101 0.899 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.811 9.741 8.089 20.256 hybrid contribution 0.190 -0.256 -0.635 0.711 sum -15.620 9.485 7.454 19.736 Atomic orbital electron populations 1.21789 0.97804 0.99157 1.01345 1.22209 0.93460 0.99926 1.01248 1.19016 0.94822 0.88194 0.83958 0.93207 1.21022 0.88753 1.42039 1.05932 0.90584 1.24768 0.94754 0.93720 0.98712 1.69988 1.11204 1.40543 1.30291 0.87192 0.82012 0.77836 0.84384 1.20503 1.21157 1.17456 1.46136 1.23717 1.50544 1.15131 1.20275 0.81524 0.78914 0.90284 1.90657 1.58029 1.59606 1.33419 1.21533 0.96124 1.00910 0.97403 1.20385 0.93737 0.93411 0.94791 1.19416 0.95877 0.93750 0.94959 1.20969 0.99397 0.97250 0.93632 1.21069 0.99359 0.94065 0.99276 1.20919 0.98251 0.98816 0.96793 1.19787 0.98181 0.96080 0.95078 1.20753 0.98498 0.95878 1.01688 1.20755 0.99855 0.93530 0.99642 1.22999 0.99054 0.97526 0.96687 1.22872 1.00757 0.97115 0.97514 1.23000 0.97720 0.99720 0.95672 0.93621 0.93272 0.94719 0.92366 0.92732 0.92465 0.77627 0.89176 0.89178 0.86087 0.86651 0.86811 0.91643 0.91636 0.91870 0.86742 0.91358 0.89972 0.91638 0.90233 0.89943 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 9.04 37.16 0.34 -2.42 16 2 C -0.13 -2.82 4.98 -26.73 -0.13 -2.95 16 3 C 0.24 5.73 1.80 -69.08 -0.12 5.60 16 4 H 0.05 1.31 5.79 -51.93 -0.30 1.01 16 5 C -0.54 -14.64 9.18 -34.44 -0.32 -14.96 16 6 H 0.08 2.19 8.05 -52.48 -0.42 1.76 16 7 C 0.08 2.38 5.30 -17.82 -0.09 2.29 16 8 N -0.88 -26.20 13.96 55.43 0.77 -25.43 16 9 Si 0.86 21.41 25.81 -169.99 -4.39 17.02 16 10 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.25 -6.07 5.62 56.52 0.32 -5.75 16 13 N -0.71 -13.76 4.75 -54.93 -0.26 -14.03 16 14 C 0.50 9.08 5.59 -10.99 -0.06 9.02 16 15 O -0.54 -11.26 12.29 5.56 0.07 -11.19 16 16 C -0.12 -1.59 4.96 -27.88 -0.14 -1.73 16 17 C -0.02 -0.29 0.50 -154.85 -0.08 -0.36 16 18 C -0.04 -0.57 3.90 -104.63 -0.41 -0.98 16 19 C -0.09 -1.40 8.39 -39.58 -0.33 -1.73 16 20 C -0.12 -1.66 10.05 -39.58 -0.40 -2.06 16 21 C -0.13 -1.72 9.68 -39.58 -0.38 -2.11 16 22 C -0.09 -1.21 5.88 -104.62 -0.62 -1.82 16 23 C -0.11 -1.16 10.01 36.01 0.36 -0.80 16 24 C -0.12 -1.63 8.96 -39.58 -0.35 -1.99 16 25 C -0.13 -1.25 7.20 -25.92 -0.19 -1.44 16 26 C -0.15 -1.44 7.73 -25.92 -0.20 -1.64 16 27 C -0.12 -1.54 5.86 -25.92 -0.15 -1.69 16 28 H 0.04 0.83 6.25 -51.93 -0.32 0.51 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.34 5.13 -51.93 -0.27 1.07 16 32 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.07 16 34 H 0.39 6.79 8.69 -40.82 -0.35 6.44 16 35 H 0.09 1.01 7.31 -51.93 -0.38 0.63 16 36 H 0.09 1.10 7.46 -51.93 -0.39 0.71 16 37 H 0.12 1.75 6.08 -52.48 -0.32 1.43 16 38 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 39 H 0.11 1.27 8.06 -52.48 -0.42 0.85 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 42 H 0.06 0.61 8.05 -51.93 -0.42 0.19 16 43 H 0.11 1.37 7.66 -52.48 -0.40 0.97 16 44 H 0.07 0.60 8.10 -51.92 -0.42 0.18 16 45 H 0.08 0.81 8.10 -51.93 -0.42 0.38 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.08 0.76 7.62 -51.93 -0.40 0.36 16 48 H 0.08 0.99 6.39 -51.93 -0.33 0.65 16 49 H 0.08 1.11 7.15 -51.93 -0.37 0.74 16 LS Contribution 376.75 15.07 5.68 5.68 Total: -1.00 -31.24 376.75 -9.52 -40.76 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.12 Total: 8.93 kcal Atomic # 6 Polarization: -18.47 SS G_CDS: -3.28 Total: -21.74 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.51 Total: -39.46 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: 0.07 Total: -11.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.39 Total: 17.02 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.24 -9.52 -40.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185093693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.070 kcal (2) G-P(sol) polarization free energy of solvation -31.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds