Wall clock time and date at job start Tue Mar 31 2020 11:46:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.46895 * 2 1 4 4 H 1.08994 * 109.47230 * 302.51706 * 3 2 1 5 5 C 1.50702 * 109.47107 * 182.51491 * 3 2 1 6 6 H 1.08003 * 119.99986 * 243.31286 * 5 3 2 7 7 C 1.37872 * 119.99998 * 63.31864 * 5 3 2 8 8 N 1.31512 * 120.00253 * 198.71916 * 7 5 3 9 9 Si 1.86796 * 120.00103 * 18.71668 * 7 5 3 10 10 H 1.48495 * 109.47306 * 95.74150 * 9 7 5 11 11 H 1.48498 * 109.47407 * 215.74342 * 9 7 5 12 12 H 1.48499 * 109.47237 * 335.74201 * 9 7 5 13 13 N 1.46501 * 109.47002 * 62.51494 * 3 2 1 14 14 C 1.34781 * 120.00250 * 265.75169 * 13 3 2 15 15 O 1.21281 * 119.99494 * 354.70584 * 14 13 3 16 16 C 1.50693 * 119.99962 * 174.70224 * 14 13 3 17 17 C 1.53005 * 109.46961 * 185.14838 * 16 14 13 18 18 C 1.50691 * 112.84934 * 293.75254 * 17 16 14 19 19 C 1.38257 * 120.00060 * 121.48432 * 18 17 16 20 20 C 1.38212 * 120.00398 * 179.97438 * 19 18 17 21 21 C 1.38262 * 119.99655 * 0.02587 * 20 19 18 22 22 C 1.38207 * 120.00058 * 359.95066 * 21 20 19 23 23 C 1.50703 * 119.99737 * 180.02562 * 22 21 20 24 24 C 1.38211 * 120.00228 * 301.20693 * 18 17 16 25 25 C 1.53779 * 113.61323 * 162.44547 * 17 16 14 26 26 C 1.53781 * 87.08332 * 270.88814 * 25 17 16 27 27 C 1.53784 * 87.08057 * 334.56771 * 26 25 17 28 28 H 1.09000 * 109.47521 * 303.04049 * 1 2 3 29 29 H 1.08998 * 109.47512 * 63.04335 * 1 2 3 30 30 H 1.08996 * 109.46792 * 183.04027 * 1 2 3 31 31 H 1.09001 * 109.47305 * 240.00637 * 2 1 3 32 32 H 1.09002 * 109.47311 * 120.00042 * 2 1 3 33 33 H 0.96997 * 120.00649 * 179.97438 * 8 7 5 34 34 H 0.97003 * 120.00231 * 85.74912 * 13 3 2 35 35 H 1.09000 * 109.47595 * 305.15031 * 16 14 13 36 36 H 1.09007 * 109.47002 * 65.15295 * 16 14 13 37 37 H 1.08004 * 119.99694 * 359.97438 * 19 18 17 38 38 H 1.08003 * 120.00069 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.99782 * 179.97438 * 21 20 19 40 40 H 1.08999 * 109.47099 * 94.99184 * 23 22 21 41 41 H 1.09004 * 109.47114 * 214.99232 * 23 22 21 42 42 H 1.08996 * 109.47275 * 334.98893 * 23 22 21 43 43 H 1.08004 * 120.00318 * 0.02562 * 24 18 17 44 44 H 1.09007 * 113.61750 * 25.43278 * 25 17 16 45 45 H 1.08996 * 113.61417 * 156.33888 * 25 17 16 46 46 H 1.09000 * 113.61481 * 220.02309 * 26 25 17 47 47 H 1.09000 * 113.69198 * 89.12602 * 26 25 17 48 48 H 1.08999 * 113.61797 * 270.89003 * 27 26 25 49 49 H 1.09002 * 113.61561 * 139.98114 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6402 1.9692 -0.8665 5 6 3.5457 1.4431 -0.0623 6 1 4.1199 1.8511 0.7563 7 6 4.1901 0.9228 -1.1645 8 7 5.4576 0.5812 -1.0847 9 14 3.2631 0.7032 -2.7713 10 1 3.5040 1.8784 -3.6465 11 1 3.7386 -0.5274 -3.4530 12 1 1.8095 0.5839 -2.4918 13 7 1.6017 2.1154 1.2253 14 6 0.4662 2.8416 1.2263 15 8 -0.1417 3.0177 0.1917 16 6 -0.0480 3.4344 2.5127 17 6 -1.4053 4.0950 2.2632 18 6 -1.3140 5.2956 1.3571 19 6 -2.0337 5.3275 0.1771 20 6 -1.9504 6.4289 -0.6537 21 6 -1.1469 7.4986 -0.3050 22 6 -0.4278 7.4670 0.8749 23 6 0.4475 8.6333 1.2553 24 6 -0.5153 6.3674 1.7085 25 6 -2.2117 4.3500 3.5475 26 6 -2.8028 2.9425 3.3622 27 6 -2.5089 3.1023 1.8612 28 1 -0.3634 0.5603 0.8615 29 1 -0.3634 0.4658 -0.9160 30 1 -0.3633 -1.0262 0.0545 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.9110 0.2148 -1.8600 34 1 2.1286 2.0383 2.0361 35 1 -0.1590 2.6461 3.2573 36 1 0.6580 4.1810 2.8765 37 1 -2.6610 4.4917 -0.0955 38 1 -2.5123 6.4536 -1.5758 39 1 -1.0814 8.3591 -0.9544 40 1 -0.1055 9.3031 1.9137 41 1 1.3356 8.2680 1.7711 42 1 0.7457 9.1723 0.3560 43 1 0.0438 6.3444 2.6323 44 1 -1.5928 4.4497 4.4392 45 1 -2.9471 5.1486 3.4500 46 1 -3.8659 2.8812 3.5948 47 1 -2.2189 2.1558 3.8401 48 1 -3.3254 3.5599 1.3026 49 1 -2.1298 2.1947 1.3914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185093693.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:41 Heat of formation + Delta-G solvation = -23.652467 kcal Electronic energy + Delta-G solvation = -27477.550137 eV Core-core repulsion = 23982.749342 eV Total energy + Delta-G solvation = -3494.800795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.73563 -40.05973 -38.86701 -36.90178 -34.36798 -33.51062 -33.18142 -32.23166 -30.50341 -29.05405 -27.93026 -26.38224 -25.51194 -24.49611 -22.79705 -22.13244 -21.95627 -21.16020 -19.37017 -18.78685 -17.80814 -17.45179 -17.32377 -16.47787 -16.29251 -15.95077 -15.71863 -15.66410 -14.93923 -14.87871 -14.67097 -14.48969 -14.34513 -13.99019 -13.86177 -13.60953 -13.49175 -13.19000 -13.09279 -12.94601 -12.79209 -12.77358 -12.69911 -12.43921 -12.30767 -12.17091 -11.87816 -11.78292 -11.51428 -11.42317 -11.33299 -11.11799 -10.91930 -10.61265 -10.44000 -9.63438 -9.55886 -9.28813 -8.40415 -6.36573 0.58477 0.59972 1.26368 1.33697 1.44693 1.99856 2.28298 2.60742 2.93601 2.96041 3.64075 3.68257 3.82284 3.99324 4.00626 4.08871 4.15530 4.31736 4.33442 4.37516 4.40317 4.53649 4.55809 4.59681 4.65343 4.70626 4.82945 4.84452 4.86451 4.91715 4.94346 4.98115 5.02827 5.08867 5.16384 5.20004 5.24240 5.29256 5.31421 5.36556 5.42637 5.48100 5.57073 5.60197 5.68841 5.77714 5.82429 5.88589 6.20703 6.25656 6.63607 7.04621 7.24781 7.66371 8.75323 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.012880 B = 0.004522 C = 0.003900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.340514 B = 6190.606971 C = 7177.459777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.127 4.127 3 C 0.252 3.748 4 H 0.022 0.978 5 C -0.539 4.539 6 H 0.051 0.949 7 C 0.039 3.961 8 N -0.925 5.925 9 Si 0.912 3.088 10 H -0.284 1.284 11 H -0.276 1.276 12 H -0.243 1.243 13 N -0.710 5.710 14 C 0.502 3.498 15 O -0.568 6.568 16 C -0.110 4.110 17 C -0.030 4.030 18 C -0.049 4.049 19 C -0.119 4.119 20 C -0.133 4.133 21 C -0.143 4.143 22 C -0.100 4.100 23 C -0.109 4.109 24 C -0.134 4.134 25 C -0.111 4.111 26 C -0.134 4.134 27 C -0.130 4.130 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.061 0.939 33 H 0.269 0.731 34 H 0.402 0.598 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.127 0.873 39 H 0.132 0.868 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.981 10.179 10.599 22.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.166 4.166 3 C 0.147 3.853 4 H 0.040 0.960 5 C -0.577 4.577 6 H 0.069 0.931 7 C -0.162 4.162 8 N -0.563 5.563 9 Si 0.737 3.263 10 H -0.210 1.210 11 H -0.202 1.202 12 H -0.167 1.167 13 N -0.359 5.359 14 C 0.289 3.711 15 O -0.448 6.448 16 C -0.150 4.150 17 C -0.031 4.031 18 C -0.049 4.049 19 C -0.137 4.137 20 C -0.151 4.151 21 C -0.161 4.161 22 C -0.100 4.100 23 C -0.166 4.166 24 C -0.152 4.152 25 C -0.148 4.148 26 C -0.171 4.171 27 C -0.168 4.168 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.236 0.764 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.145 0.855 39 H 0.150 0.850 40 H 0.102 0.898 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.148 0.852 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -17.260 10.205 9.771 22.305 hybrid contribution 0.650 -0.334 -1.143 1.357 sum -16.609 9.871 8.628 21.160 Atomic orbital electron populations 1.21658 0.95607 1.00811 1.00815 1.22094 0.95324 0.98273 1.00892 1.18644 0.92260 0.89462 0.84929 0.96008 1.21293 0.90748 1.40734 1.04909 0.93128 1.25420 0.95385 0.93892 1.01455 1.70073 1.12696 1.42261 1.31262 0.86353 0.81345 0.77760 0.80876 1.21029 1.20172 1.16661 1.46022 1.24717 1.51015 1.14190 1.21093 0.80421 0.77853 0.91686 1.90654 1.58633 1.60340 1.35156 1.21550 0.96584 1.01867 0.95004 1.20499 0.93531 0.92842 0.96188 1.19668 0.95677 0.94577 0.94985 1.21089 1.00401 0.97547 0.94612 1.21332 0.99780 0.94241 0.99774 1.21215 0.98226 0.99289 0.97408 1.20204 0.98104 0.96883 0.94858 1.20791 0.98250 0.95180 1.02379 1.21029 1.00098 0.93579 1.00487 1.22926 0.98588 0.97584 0.95725 1.22853 1.01866 0.97348 0.95055 1.22995 0.97763 0.98573 0.97441 0.92848 0.94970 0.92049 0.93780 0.92023 0.92223 0.76378 0.86374 0.87618 0.86838 0.85535 0.85035 0.89833 0.91406 0.91270 0.85152 0.89389 0.89775 0.90328 0.89301 0.90292 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.85 9.04 71.98 0.65 -4.20 16 2 C -0.13 -5.41 4.98 30.59 0.15 -5.26 16 3 C 0.25 11.85 1.80 44.25 0.08 11.93 16 4 H 0.02 1.16 5.79 -2.39 -0.01 1.15 16 5 C -0.54 -29.65 9.18 25.60 0.23 -29.42 16 6 H 0.05 2.98 8.05 -2.91 -0.02 2.96 16 7 C 0.04 2.22 5.30 84.65 0.45 2.67 16 8 N -0.92 -55.71 13.96 21.45 0.30 -55.41 16 9 Si 0.91 44.72 25.81 68.60 1.77 46.49 16 10 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.24 -11.53 5.62 99.48 0.56 -10.97 16 13 N -0.71 -27.13 4.75 -446.09 -2.12 -29.25 16 14 C 0.50 17.55 5.59 87.65 0.49 18.04 16 15 O -0.57 -23.74 12.29 -3.03 -0.04 -23.77 16 16 C -0.11 -2.66 4.96 29.85 0.15 -2.52 16 17 C -0.03 -0.70 0.50 -52.40 -0.03 -0.73 16 18 C -0.05 -1.35 3.90 -19.87 -0.08 -1.43 16 19 C -0.12 -3.53 8.39 22.27 0.19 -3.34 16 20 C -0.13 -3.71 10.05 22.27 0.22 -3.49 16 21 C -0.14 -3.71 9.68 22.27 0.22 -3.50 16 22 C -0.10 -2.53 5.88 -19.87 -0.12 -2.64 16 23 C -0.11 -2.05 10.01 71.24 0.71 -1.34 16 24 C -0.13 -3.46 8.96 22.27 0.20 -3.26 16 25 C -0.11 -1.86 7.20 31.12 0.22 -1.63 16 26 C -0.13 -2.25 7.73 31.12 0.24 -2.01 16 27 C -0.13 -3.08 5.86 31.12 0.18 -2.90 16 28 H 0.05 1.86 6.25 -2.39 -0.01 1.85 16 29 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.98 5.13 -2.39 -0.01 1.97 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 34 H 0.40 13.53 8.69 -92.71 -0.81 12.73 16 35 H 0.12 2.21 7.31 -2.39 -0.02 2.19 16 36 H 0.11 2.26 7.46 -2.38 -0.02 2.24 16 37 H 0.11 3.41 6.08 -2.91 -0.02 3.39 16 38 H 0.13 3.04 8.06 -2.91 -0.02 3.02 16 39 H 0.13 2.79 8.06 -2.91 -0.02 2.77 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 42 H 0.07 1.20 8.05 -2.39 -0.02 1.18 16 43 H 0.13 2.82 7.66 -2.91 -0.02 2.80 16 44 H 0.09 1.16 8.10 -2.38 -0.02 1.14 16 45 H 0.08 1.41 8.10 -2.39 -0.02 1.39 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.35 7.62 -2.39 -0.02 1.33 16 48 H 0.08 1.88 6.39 -2.39 -0.02 1.86 16 49 H 0.05 1.44 7.15 -2.39 -0.02 1.42 16 Total: -1.00 -68.60 376.75 4.07 -64.53 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: -0.01 Total: 32.41 kcal Atomic # 6 Polarization: -39.18 SS G_CDS: 4.17 Total: -35.01 kcal Atomic # 7 Polarization: -82.83 SS G_CDS: -1.82 Total: -84.65 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.04 Total: -23.77 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 1.77 Total: 46.49 kcal Total: -68.60 4.07 -64.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185093693.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.882 kcal (2) G-P(sol) polarization free energy of solvation -68.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds