Wall clock time and date at job start Tue Mar 31 2020 12:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99698 * 2 1 4 4 O 1.42896 * 109.47587 * 135.00345 * 3 2 1 5 5 C 1.35891 * 117.00242 * 180.02562 * 4 3 2 6 6 C 1.38740 * 120.05800 * 179.97438 * 5 4 3 7 7 C 1.38141 * 119.94804 * 180.02562 * 6 5 4 8 8 C 1.38270 * 120.05424 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.94345 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46999 * 95.42400 * 9 8 7 11 11 C 1.46893 * 110.99822 * 160.87913 * 10 9 8 12 12 C 1.50700 * 109.47262 * 209.31077 * 11 10 9 13 13 H 1.07999 * 119.99781 * 357.41915 * 12 11 10 14 14 C 1.37878 * 120.00207 * 177.41720 * 12 11 10 15 15 N 1.31516 * 120.00172 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46856 * 89.99891 * 16 14 12 18 18 H 1.48492 * 109.47125 * 209.99649 * 16 14 12 19 19 H 1.48495 * 109.47158 * 330.00164 * 16 14 12 20 20 C 1.46903 * 110.99838 * 284.83208 * 10 9 8 21 21 C 1.54958 * 110.92110 * 186.16373 * 20 10 9 22 22 C 1.54262 * 104.16196 * 156.29600 * 21 20 10 23 23 C 1.53873 * 106.63916 * 336.44466 * 22 21 20 24 24 C 1.54268 * 106.59701 * 359.97438 * 23 22 21 25 25 C 1.38267 * 120.11092 * 0.25423 * 8 7 6 26 26 C 1.38146 * 120.05540 * 359.45087 * 25 8 7 27 27 H 1.07997 * 120.00580 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99938 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00486 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47374 * 14.99725 * 3 2 1 31 31 H 1.09007 * 109.46977 * 255.00069 * 3 2 1 32 32 H 1.07999 * 120.02177 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.97001 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47544 * 335.42539 * 9 8 7 35 35 H 1.08997 * 109.47265 * 215.42016 * 9 8 7 36 36 H 1.09005 * 109.47655 * 329.31028 * 11 10 9 37 37 H 1.09003 * 109.47486 * 89.31248 * 11 10 9 38 38 H 0.96993 * 119.99812 * 179.97438 * 15 14 12 39 39 H 1.08994 * 110.67383 * 62.85813 * 20 10 9 40 40 H 1.09005 * 110.48086 * 37.63888 * 21 20 10 41 41 H 1.09000 * 110.53026 * 274.98013 * 21 20 10 42 42 H 1.08996 * 110.03498 * 217.13527 * 22 21 20 43 43 H 1.09006 * 110.03319 * 95.75385 * 22 21 20 44 44 H 1.09000 * 110.03221 * 119.25680 * 23 22 21 45 45 H 1.08997 * 110.03415 * 240.64123 * 23 22 21 46 46 H 1.09005 * 110.48581 * 142.29014 * 24 23 22 47 47 H 1.09000 * 110.48510 * 264.79901 * 24 23 22 48 48 H 1.07997 * 119.96962 * 179.70426 * 25 8 7 49 49 H 1.08002 * 120.03168 * 180.25495 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2415 0.9526 5 6 3.9089 2.3455 1.0788 6 6 4.9592 2.3531 1.9853 7 6 5.7526 3.4768 2.1121 8 6 5.5004 4.5936 1.3370 9 6 6.3671 5.8183 1.4778 10 7 7.4230 5.7910 0.4567 11 6 7.9942 7.1291 0.2543 12 6 8.4847 7.2565 -1.1649 13 1 8.4205 6.4129 -1.8362 14 6 9.0156 8.4499 -1.6064 15 7 9.0934 9.4774 -0.7891 16 14 9.6230 8.6080 -3.3659 17 1 8.5097 9.0677 -4.2344 18 1 10.7323 9.5936 -3.4199 19 1 10.1096 7.2883 -3.8420 20 6 8.4682 4.8197 0.8061 21 6 9.6540 4.9012 -0.1882 22 6 10.8504 4.3351 0.6041 23 6 10.5168 4.5162 2.0953 24 6 9.1289 5.1869 2.1580 25 6 4.4508 4.5907 0.4369 26 6 3.6582 3.4673 0.3020 27 1 -0.5401 0.9352 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3854 2.1162 0.2659 31 1 2.4754 1.4868 -0.9927 32 1 5.1562 1.4811 2.5913 33 1 6.5705 3.4829 2.8174 34 1 6.8205 5.8306 2.4689 35 1 5.7574 6.7121 1.3460 36 1 7.2299 7.8830 0.4435 37 1 8.8276 7.2762 0.9413 38 1 9.4671 10.3168 -1.0996 39 1 8.0599 3.8096 0.8374 40 1 9.8413 5.9362 -0.4744 41 1 9.4567 4.2907 -1.0693 42 1 11.7574 4.8858 0.3549 43 1 10.9819 3.2772 0.3767 44 1 10.4854 3.5461 2.5913 45 1 11.2623 5.1541 2.5700 46 1 8.5481 4.7848 2.9881 47 1 9.2316 6.2678 2.2537 48 1 4.2529 5.4660 -0.1639 49 1 2.8410 3.4640 -0.4041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204300287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:12 Heat of formation + Delta-G solvation = 8.111769 kcal Electronic energy + Delta-G solvation = -26364.298852 eV Core-core repulsion = 22870.875458 eV Total energy + Delta-G solvation = -3493.423394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.11408 -38.77760 -37.40240 -34.63623 -34.13690 -32.63229 -30.86519 -30.39094 -28.21062 -27.24425 -27.15030 -26.18234 -23.92072 -22.57878 -21.94329 -20.96876 -20.20202 -19.56344 -18.48493 -18.09474 -16.47147 -16.37026 -15.89901 -15.74746 -15.08195 -14.82547 -14.68531 -14.46572 -14.07581 -13.87299 -13.55182 -13.32744 -13.07391 -12.79220 -12.63730 -12.46703 -12.36709 -11.63747 -11.53095 -11.40149 -11.27912 -11.07211 -10.87314 -10.81203 -10.67641 -10.56937 -10.52835 -10.34226 -10.13975 -10.01963 -9.84845 -9.81553 -9.24689 -9.23446 -8.77795 -8.37335 -7.89226 -7.12618 -6.00546 -3.97732 1.55407 1.65210 1.74117 3.28874 3.32750 3.39423 3.43204 3.95698 4.44569 4.53350 4.71251 4.95056 4.95467 5.05401 5.07457 5.16648 5.24782 5.27991 5.30534 5.36473 5.43572 5.54964 5.60195 5.66805 5.81719 5.91357 6.03916 6.09176 6.15940 6.18198 6.21062 6.24709 6.28195 6.29475 6.34949 6.40687 6.47600 6.53601 6.59937 6.63775 6.81530 6.95517 6.97065 7.04562 7.23457 7.38997 7.49420 7.60800 7.87702 8.16534 8.29710 8.58355 9.07798 9.61785 11.08795 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.003183 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.114416 B = 8793.421562 C = 9830.841589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.152 4.152 3 C 0.087 3.913 4 O -0.316 6.316 5 C 0.115 3.885 6 C -0.154 4.154 7 C -0.077 4.077 8 C -0.091 4.091 9 C 0.091 3.909 10 N -0.522 5.522 11 C 0.186 3.814 12 C -0.492 4.492 13 H 0.067 0.933 14 C 0.053 3.947 15 N -0.899 5.899 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.289 1.289 19 H -0.273 1.273 20 C 0.094 3.906 21 C -0.136 4.136 22 C -0.124 4.124 23 C -0.115 4.115 24 C -0.160 4.160 25 C -0.057 4.057 26 C -0.209 4.209 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.119 0.881 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.123 0.877 34 H 0.036 0.964 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.006 0.994 38 H 0.260 0.740 39 H 0.068 0.932 40 H 0.126 0.874 41 H 0.052 0.948 42 H 0.056 0.944 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.054 0.946 46 H 0.050 0.950 47 H 0.075 0.925 48 H 0.127 0.873 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -14.807 5.081 18.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.012 3.988 4 O -0.231 6.231 5 C 0.070 3.930 6 C -0.172 4.172 7 C -0.096 4.096 8 C -0.092 4.092 9 C -0.037 4.037 10 N -0.245 5.245 11 C 0.061 3.939 12 C -0.530 4.530 13 H 0.085 0.915 14 C -0.148 4.148 15 N -0.538 5.538 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.198 1.198 20 C -0.016 4.016 21 C -0.173 4.173 22 C -0.162 4.162 23 C -0.154 4.154 24 C -0.199 4.199 25 C -0.076 4.076 26 C -0.228 4.228 27 H 0.118 0.882 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.141 0.859 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.144 0.856 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.073 0.927 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.145 0.855 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -10.560 -14.924 4.727 18.883 hybrid contribution 0.623 0.502 -0.377 0.885 sum -9.937 -14.422 4.350 18.046 Atomic orbital electron populations 1.23869 0.95442 1.02496 0.99468 1.22704 0.95652 0.97930 1.00763 1.21777 0.88060 0.96481 0.92525 1.86032 1.42233 1.36207 1.58611 1.18913 0.91952 0.85897 0.96231 1.20297 0.96184 0.99758 1.00985 1.20870 0.98015 0.91987 0.98721 1.19914 0.96366 0.96280 0.96675 1.21048 0.93602 0.94570 0.94467 1.62235 1.10743 1.10491 1.41014 1.19891 0.94180 0.82902 0.96902 1.21192 1.38268 0.97048 0.96535 0.91533 1.24988 0.96584 0.95810 0.97431 1.69950 1.46182 1.02474 1.35234 0.86580 0.78360 0.77899 0.85127 1.20781 1.21458 1.19756 1.22531 0.91272 0.95463 0.92291 1.23012 0.91985 1.05952 0.96378 1.22145 0.99457 0.99665 0.94976 1.21979 0.97102 0.99412 0.96875 1.23035 0.96078 1.01612 0.99160 1.20865 0.93338 0.97409 0.95990 1.21180 1.03747 0.94407 1.03436 0.88233 0.87549 0.86331 0.91590 0.91016 0.85817 0.85887 0.94596 0.90646 0.95789 0.97643 0.93019 0.91422 0.85590 0.92903 0.92468 0.93257 0.92951 0.92680 0.93112 0.90676 0.85518 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 14.31 29.01 0.42 -0.77 16 2 C -0.15 -1.27 9.89 -36.02 -0.36 -1.63 16 3 C 0.09 0.85 5.15 36.01 0.19 1.04 16 4 O -0.32 -4.09 10.12 -19.40 -0.20 -4.29 16 5 C 0.11 1.60 6.69 -39.21 -0.26 1.34 16 6 C -0.15 -2.12 9.99 -39.43 -0.39 -2.52 16 7 C -0.08 -1.11 8.69 -39.61 -0.34 -1.46 16 8 C -0.09 -1.45 5.02 -104.60 -0.53 -1.98 16 9 C 0.09 1.61 5.00 -4.97 -0.02 1.58 16 10 N -0.52 -10.74 4.45 -227.09 -1.01 -11.75 16 11 C 0.19 4.55 4.23 -4.98 -0.02 4.53 16 12 C -0.49 -13.08 6.49 -34.44 -0.22 -13.30 16 13 H 0.07 1.79 7.16 -52.49 -0.38 1.41 16 14 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 15 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 16 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.39 7.11 56.52 0.40 -5.98 16 20 C 0.09 1.76 2.84 -65.68 -0.19 1.57 16 21 C -0.14 -2.68 5.28 -25.04 -0.13 -2.82 16 22 C -0.12 -2.06 6.80 -25.62 -0.17 -2.23 16 23 C -0.12 -1.79 6.80 -25.61 -0.17 -1.97 16 24 C -0.16 -2.73 4.97 -25.07 -0.12 -2.85 16 25 C -0.06 -0.88 9.71 -39.60 -0.38 -1.26 16 26 C -0.21 -2.86 9.04 -39.43 -0.36 -3.22 16 27 H 0.10 0.59 7.90 -52.49 -0.41 0.18 16 28 H 0.11 0.56 8.06 -52.49 -0.42 0.13 16 29 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 30 H 0.07 0.59 7.38 -51.93 -0.38 0.20 16 31 H 0.07 0.67 7.66 -51.93 -0.40 0.27 16 32 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 33 H 0.12 1.62 7.96 -52.49 -0.42 1.20 16 34 H 0.04 0.61 6.30 -51.93 -0.33 0.28 16 35 H 0.08 1.36 7.51 -51.93 -0.39 0.97 16 36 H 0.02 0.64 7.43 -51.93 -0.39 0.25 16 37 H 0.01 0.15 5.56 -51.93 -0.29 -0.14 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.07 1.24 7.01 -51.93 -0.36 0.87 16 40 H 0.13 2.94 4.45 -51.93 -0.23 2.71 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 46 H 0.05 0.77 7.50 -51.93 -0.39 0.38 16 47 H 0.07 1.46 5.99 -51.93 -0.31 1.15 16 48 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 49 H 0.12 1.39 6.30 -52.49 -0.33 1.06 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -28.68 382.44 -10.86 -39.53 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.95 Total: 4.23 kcal Atomic # 6 Polarization: -21.41 SS G_CDS: -3.18 Total: -24.59 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: -0.27 Total: -36.86 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.20 Total: -4.29 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.68 -10.86 -39.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204300287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.644 kcal (2) G-P(sol) polarization free energy of solvation -28.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds