Wall clock time and date at job start Tue Mar 31 2020 12:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50702 * 119.99698 * 2 1 4 4 O 1.42896 * 109.47587 * 135.00345 * 3 2 1 5 5 C 1.35891 * 117.00242 * 180.02562 * 4 3 2 6 6 C 1.38740 * 120.05800 * 179.97438 * 5 4 3 7 7 C 1.38141 * 119.94804 * 180.02562 * 6 5 4 8 8 C 1.38270 * 120.05424 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.94345 * 179.97438 * 8 7 6 10 10 N 1.46906 * 109.46999 * 95.42400 * 9 8 7 11 11 C 1.46893 * 110.99822 * 160.87913 * 10 9 8 12 12 C 1.50700 * 109.47262 * 209.31077 * 11 10 9 13 13 H 1.07999 * 119.99781 * 357.41915 * 12 11 10 14 14 C 1.37878 * 120.00207 * 177.41720 * 12 11 10 15 15 N 1.31516 * 120.00172 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.46856 * 89.99891 * 16 14 12 18 18 H 1.48492 * 109.47125 * 209.99649 * 16 14 12 19 19 H 1.48495 * 109.47158 * 330.00164 * 16 14 12 20 20 C 1.46903 * 110.99838 * 284.83208 * 10 9 8 21 21 C 1.54958 * 110.92110 * 186.16373 * 20 10 9 22 22 C 1.54262 * 104.16196 * 156.29600 * 21 20 10 23 23 C 1.53873 * 106.63916 * 336.44466 * 22 21 20 24 24 C 1.54268 * 106.59701 * 359.97438 * 23 22 21 25 25 C 1.38267 * 120.11092 * 0.25423 * 8 7 6 26 26 C 1.38146 * 120.05540 * 359.45087 * 25 8 7 27 27 H 1.07997 * 120.00580 * 359.97438 * 1 2 3 28 28 H 1.08000 * 119.99938 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.00486 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47374 * 14.99725 * 3 2 1 31 31 H 1.09007 * 109.46977 * 255.00069 * 3 2 1 32 32 H 1.07999 * 120.02177 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.97001 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47544 * 335.42539 * 9 8 7 35 35 H 1.08997 * 109.47265 * 215.42016 * 9 8 7 36 36 H 1.09005 * 109.47655 * 329.31028 * 11 10 9 37 37 H 1.09003 * 109.47486 * 89.31248 * 11 10 9 38 38 H 0.96993 * 119.99812 * 179.97438 * 15 14 12 39 39 H 1.08994 * 110.67383 * 62.85813 * 20 10 9 40 40 H 1.09005 * 110.48086 * 37.63888 * 21 20 10 41 41 H 1.09000 * 110.53026 * 274.98013 * 21 20 10 42 42 H 1.08996 * 110.03498 * 217.13527 * 22 21 20 43 43 H 1.09006 * 110.03319 * 95.75385 * 22 21 20 44 44 H 1.09000 * 110.03221 * 119.25680 * 23 22 21 45 45 H 1.08997 * 110.03415 * 240.64123 * 23 22 21 46 46 H 1.09005 * 110.48581 * 142.29014 * 24 23 22 47 47 H 1.09000 * 110.48510 * 264.79901 * 24 23 22 48 48 H 1.07997 * 119.96962 * 179.70426 * 25 8 7 49 49 H 1.08002 * 120.03168 * 180.25495 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2415 0.9526 5 6 3.9089 2.3455 1.0788 6 6 4.9592 2.3531 1.9853 7 6 5.7526 3.4768 2.1121 8 6 5.5004 4.5936 1.3370 9 6 6.3671 5.8183 1.4778 10 7 7.4230 5.7910 0.4567 11 6 7.9942 7.1291 0.2543 12 6 8.4847 7.2565 -1.1649 13 1 8.4205 6.4129 -1.8362 14 6 9.0156 8.4499 -1.6064 15 7 9.0934 9.4774 -0.7891 16 14 9.6230 8.6080 -3.3659 17 1 8.5097 9.0677 -4.2344 18 1 10.7323 9.5936 -3.4199 19 1 10.1096 7.2883 -3.8420 20 6 8.4682 4.8197 0.8061 21 6 9.6540 4.9012 -0.1882 22 6 10.8504 4.3351 0.6041 23 6 10.5168 4.5162 2.0953 24 6 9.1289 5.1869 2.1580 25 6 4.4508 4.5907 0.4369 26 6 3.6582 3.4673 0.3020 27 1 -0.5401 0.9352 0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9352 0.0004 30 1 1.3854 2.1162 0.2659 31 1 2.4754 1.4868 -0.9927 32 1 5.1562 1.4811 2.5913 33 1 6.5705 3.4829 2.8174 34 1 6.8205 5.8306 2.4689 35 1 5.7574 6.7121 1.3460 36 1 7.2299 7.8830 0.4435 37 1 8.8276 7.2762 0.9413 38 1 9.4671 10.3168 -1.0996 39 1 8.0599 3.8096 0.8374 40 1 9.8413 5.9362 -0.4744 41 1 9.4567 4.2907 -1.0693 42 1 11.7574 4.8858 0.3549 43 1 10.9819 3.2772 0.3767 44 1 10.4854 3.5461 2.5913 45 1 11.2623 5.1541 2.5700 46 1 8.5481 4.7848 2.9881 47 1 9.2316 6.2678 2.2537 48 1 4.2529 5.4660 -0.1639 49 1 2.8410 3.4640 -0.4041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204300287.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:11 Heat of formation + Delta-G solvation = -5.896296 kcal Electronic energy + Delta-G solvation = -26364.906287 eV Core-core repulsion = 22870.875458 eV Total energy + Delta-G solvation = -3494.030830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.18850 -40.18862 -38.51883 -36.00268 -35.04171 -34.52443 -31.96160 -31.74652 -29.71238 -28.91345 -28.30042 -27.33577 -25.47389 -23.73263 -23.62936 -22.15223 -20.98871 -20.78797 -20.03469 -19.10954 -18.37862 -17.39324 -17.22223 -16.83698 -16.67120 -16.21614 -16.06508 -15.53949 -15.39542 -15.16796 -14.71379 -14.37415 -14.36644 -14.27845 -14.04191 -13.68250 -13.42732 -13.08580 -13.04996 -12.86525 -12.79567 -12.43294 -12.30894 -12.14144 -12.06596 -12.03113 -11.88755 -11.73387 -11.66254 -11.52285 -11.28782 -11.15686 -10.92313 -10.47729 -10.42887 -9.88202 -9.03761 -8.78245 -8.10522 -6.14401 0.45067 0.50738 1.14672 1.42007 1.42699 1.53412 2.42628 2.43889 2.80289 3.18093 3.48293 3.80835 3.86667 3.95088 3.96660 4.00415 4.03517 4.09606 4.22149 4.29711 4.37263 4.47892 4.53312 4.60485 4.65179 4.70451 4.72097 4.80869 4.82589 4.89191 4.96745 4.98038 5.03736 5.13943 5.17459 5.20718 5.22560 5.34559 5.36931 5.45106 5.55496 5.58061 5.61347 5.67023 5.76924 5.81627 5.87097 5.92357 6.19474 6.48532 6.56488 6.74827 6.96655 7.48617 8.97728 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014144 B = 0.003183 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1979.114416 B = 8793.421562 C = 9830.841589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.175 4.175 3 C 0.080 3.920 4 O -0.325 6.325 5 C 0.114 3.886 6 C -0.156 4.156 7 C -0.075 4.075 8 C -0.108 4.108 9 C 0.096 3.904 10 N -0.532 5.532 11 C 0.205 3.795 12 C -0.491 4.491 13 H 0.060 0.940 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.954 3.046 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.266 1.266 20 C 0.095 3.905 21 C -0.140 4.140 22 C -0.120 4.120 23 C -0.111 4.111 24 C -0.154 4.154 25 C -0.071 4.071 26 C -0.208 4.208 27 H 0.107 0.893 28 H 0.123 0.877 29 H 0.119 0.881 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.044 0.956 35 H 0.060 0.940 36 H -0.006 1.006 37 H -0.013 1.013 38 H 0.261 0.739 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.053 0.947 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.044 0.956 48 H 0.119 0.881 49 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 -17.503 5.276 21.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.193 4.193 3 C 0.006 3.994 4 O -0.239 6.239 5 C 0.069 3.931 6 C -0.175 4.175 7 C -0.093 4.093 8 C -0.109 4.109 9 C -0.031 4.031 10 N -0.254 5.254 11 C 0.079 3.921 12 C -0.529 4.529 13 H 0.078 0.922 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.780 3.220 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.014 4.014 21 C -0.178 4.178 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.193 4.193 25 C -0.090 4.090 26 C -0.227 4.227 27 H 0.126 0.874 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.062 0.938 35 H 0.079 0.921 36 H 0.012 0.988 37 H 0.004 0.996 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.077 0.923 46 H 0.092 0.908 47 H 0.062 0.938 48 H 0.137 0.863 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -11.177 -17.644 4.922 21.458 hybrid contribution 0.677 1.246 -0.427 1.481 sum -10.500 -16.398 4.495 19.983 Atomic orbital electron populations 1.24116 0.94937 1.03744 0.96806 1.22689 0.96206 0.97256 1.03192 1.22010 0.87562 0.97837 0.92025 1.86035 1.42783 1.35701 1.59429 1.19080 0.92013 0.86137 0.95882 1.20540 0.95838 1.00095 1.01003 1.20971 0.98442 0.91450 0.98443 1.19755 0.96793 0.96101 0.98267 1.20981 0.92855 0.95342 0.93961 1.62149 1.11703 1.08549 1.43016 1.19498 0.92511 0.84495 0.95585 1.21388 1.37568 0.96699 0.97284 0.92211 1.25745 0.96996 0.95590 1.01252 1.70069 1.47504 1.02965 1.37071 0.85601 0.77855 0.78014 0.80521 1.20359 1.21143 1.19024 1.22565 0.90543 0.95340 0.92928 1.22882 0.94201 1.03515 0.97153 1.22112 0.97655 1.00796 0.95222 1.21983 0.95808 1.00812 0.96281 1.22940 0.97568 0.99925 0.98888 1.20913 0.93903 0.97938 0.96218 1.21336 1.03910 0.93745 1.03695 0.87437 0.85842 0.86265 0.90692 0.90772 0.83920 0.84449 0.93769 0.92122 0.98791 0.99565 0.93048 0.90033 0.89589 0.93439 0.92806 0.90862 0.89972 0.92336 0.90800 0.93772 0.86263 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 14.31 67.78 0.97 -0.76 16 2 C -0.18 -2.58 9.89 25.65 0.25 -2.33 16 3 C 0.08 1.43 5.15 71.24 0.37 1.80 16 4 O -0.32 -7.79 10.12 -92.33 -0.93 -8.72 16 5 C 0.11 2.98 6.69 22.51 0.15 3.13 16 6 C -0.16 -3.97 9.99 22.37 0.22 -3.74 16 7 C -0.07 -2.01 8.69 22.25 0.19 -1.82 16 8 C -0.11 -3.40 5.02 -19.85 -0.10 -3.50 16 9 C 0.10 3.47 5.00 85.55 0.43 3.90 16 10 N -0.53 -22.44 4.45 -872.39 -3.88 -26.32 16 11 C 0.20 10.55 4.23 85.56 0.36 10.91 16 12 C -0.49 -27.05 6.49 25.60 0.17 -26.89 16 13 H 0.06 3.31 7.16 -2.91 -0.02 3.29 16 14 C 0.00 0.08 5.46 84.65 0.46 0.54 16 15 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 16 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 20 C 0.09 3.52 2.84 46.23 0.13 3.65 16 21 C -0.14 -5.53 5.28 31.69 0.17 -5.36 16 22 C -0.12 -3.77 6.80 31.32 0.21 -3.56 16 23 C -0.11 -3.18 6.80 31.32 0.21 -2.97 16 24 C -0.15 -5.12 4.97 31.67 0.16 -4.96 16 25 C -0.07 -2.16 9.71 22.25 0.22 -1.94 16 26 C -0.21 -5.46 9.04 22.37 0.20 -5.26 16 27 H 0.11 0.99 7.90 -2.91 -0.02 0.97 16 28 H 0.12 0.92 8.06 -2.91 -0.02 0.90 16 29 H 0.12 1.70 8.06 -2.91 -0.02 1.68 16 30 H 0.07 1.18 7.38 -2.38 -0.02 1.16 16 31 H 0.07 1.26 7.66 -2.38 -0.02 1.25 16 32 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 33 H 0.14 3.24 7.96 -2.91 -0.02 3.22 16 34 H 0.04 1.50 6.30 -2.39 -0.02 1.48 16 35 H 0.06 2.32 7.51 -2.39 -0.02 2.30 16 36 H -0.01 -0.34 7.43 -2.38 -0.02 -0.36 16 37 H -0.01 -0.73 5.56 -2.39 -0.01 -0.74 16 38 H 0.26 14.75 8.31 -92.71 -0.77 13.98 16 39 H 0.08 2.83 7.01 -2.39 -0.02 2.81 16 40 H 0.09 4.15 4.45 -2.38 -0.01 4.13 16 41 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 46 H 0.07 2.09 7.50 -2.38 -0.02 2.07 16 47 H 0.04 1.75 5.99 -2.39 -0.01 1.73 16 48 H 0.12 3.70 8.06 -2.91 -0.02 3.68 16 49 H 0.14 3.02 6.30 -2.91 -0.02 3.00 16 Total: -1.00 -63.33 382.44 3.19 -60.14 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: 0.91 Total: 22.95 kcal Atomic # 6 Polarization: -43.95 SS G_CDS: 4.78 Total: -39.17 kcal Atomic # 7 Polarization: -78.07 SS G_CDS: -3.59 Total: -81.67 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.93 Total: -8.72 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.33 3.19 -60.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204300287.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.245 kcal (2) G-P(sol) polarization free energy of solvation -63.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds