Wall clock time and date at job start Tue Mar 31 2020 11:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47239 * 2 1 4 4 H 1.09008 * 109.47707 * 181.53361 * 3 2 1 5 5 C 1.50703 * 109.47406 * 61.53422 * 3 2 1 6 6 H 1.08007 * 119.99655 * 240.00437 * 5 3 2 7 7 C 1.37867 * 120.00005 * 59.99761 * 5 3 2 8 8 N 1.31513 * 120.00339 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99953 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46782 * 60.00365 * 9 7 5 11 11 H 1.48498 * 109.47249 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47236 * 300.00217 * 9 7 5 13 13 N 1.46905 * 109.47136 * 301.53130 * 3 2 1 14 14 C 1.46847 * 110.99680 * 301.67511 * 13 3 2 15 15 C 1.53056 * 109.51147 * 174.09971 * 14 13 3 16 16 C 1.52949 * 109.32158 * 58.93353 * 15 14 13 17 17 C 1.53243 * 109.54842 * 182.50199 * 16 15 14 18 18 C 1.53077 * 108.35091 * 175.56087 * 17 16 15 19 19 C 1.50777 * 109.71787 * 47.86577 * 18 17 16 20 20 C 1.38519 * 118.73211 * 162.28776 * 19 18 17 21 21 C 1.38109 * 120.33439 * 179.75070 * 20 19 18 22 22 C 1.38297 * 119.96893 * 359.97438 * 21 20 19 23 23 C 1.37968 * 119.96483 * 0.10501 * 22 21 20 24 24 C 1.38366 * 121.46270 * 342.24005 * 19 18 17 25 25 O 1.35872 * 121.77975 * 0.66189 * 24 19 18 26 26 C 1.52967 * 109.44373 * 302.64342 * 16 15 14 27 27 C 1.46847 * 111.00138 * 177.43782 * 13 3 2 28 28 H 1.08994 * 109.47612 * 294.54370 * 1 2 3 29 29 H 1.09005 * 109.46955 * 54.55122 * 1 2 3 30 30 H 1.09004 * 109.47324 * 174.54510 * 1 2 3 31 31 H 1.09007 * 109.47316 * 120.00031 * 2 1 3 32 32 H 1.08999 * 109.47464 * 239.99526 * 2 1 3 33 33 H 0.97004 * 120.00471 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46588 * 294.10912 * 14 13 3 35 35 H 1.08996 * 109.46489 * 54.08709 * 14 13 3 36 36 H 1.09007 * 109.49664 * 298.98044 * 15 14 13 37 37 H 1.09003 * 109.49810 * 178.88503 * 15 14 13 38 38 H 1.08997 * 109.69216 * 295.28429 * 17 16 15 39 39 H 1.09001 * 109.68724 * 55.85254 * 17 16 15 40 40 H 1.09003 * 109.42812 * 167.93711 * 18 17 16 41 41 H 1.09001 * 109.43634 * 287.78945 * 18 17 16 42 42 H 1.07998 * 119.83633 * 359.71578 * 20 19 18 43 43 H 1.08000 * 120.01233 * 179.97438 * 21 20 19 44 44 H 1.08000 * 120.01759 * 180.08297 * 22 21 20 45 45 H 1.07997 * 119.89734 * 179.97438 * 23 22 21 46 46 H 1.09004 * 109.49952 * 297.45362 * 26 16 15 47 47 H 1.09006 * 109.50029 * 177.33709 * 26 16 15 48 48 H 1.08995 * 109.46982 * 305.96782 * 27 13 3 49 49 H 1.09000 * 109.46712 * 65.95826 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4426 -0.0275 5 6 1.5690 2.1418 1.2490 6 1 0.9458 3.0208 1.1734 7 6 1.9334 1.6597 2.4882 8 7 2.6925 0.5897 2.5803 9 14 1.3490 2.5263 4.0364 10 1 -0.1355 2.5255 4.0736 11 1 1.8749 1.8160 5.2298 12 1 1.8435 3.9265 4.0366 13 7 1.5203 2.1456 -1.1805 14 6 1.9272 1.4678 -2.4181 15 6 1.2495 2.1390 -3.6151 16 6 1.6479 3.6151 -3.6600 17 6 0.9232 4.3067 -4.8197 18 6 1.2533 5.8007 -4.7718 19 6 2.7402 5.9881 -4.6065 20 6 3.2934 7.2217 -4.9078 21 6 4.6508 7.4315 -4.7635 22 6 5.4644 6.4067 -4.3156 23 6 4.9195 5.1753 -4.0154 24 6 3.5528 4.9599 -4.1627 25 8 3.0547 3.7307 -3.8675 26 6 1.2617 4.2870 -2.3412 27 6 1.9404 3.5526 -1.1823 28 1 -0.3634 0.4268 0.9347 29 1 -0.3633 0.5960 -0.8372 30 1 -0.3634 -1.0230 -0.0977 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.9487 0.2503 3.4521 34 1 3.0095 1.5339 -2.5294 35 1 1.6301 0.4201 -2.3730 36 1 0.1673 2.0572 -3.5135 37 1 1.5671 1.6484 -4.5352 38 1 1.2609 3.8861 -5.7668 39 1 -0.1527 4.1649 -4.7171 40 1 0.9291 6.2735 -5.6989 41 1 0.7342 6.2600 -3.9305 42 1 2.6602 8.0235 -5.2579 43 1 5.0767 8.3953 -5.0004 44 1 6.5258 6.5703 -4.2012 45 1 5.5559 4.3757 -3.6662 46 1 0.1799 4.2455 -2.2147 47 1 1.5876 5.3272 -2.3537 48 1 1.6538 4.0185 -0.2395 49 1 3.0225 3.6085 -1.3009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255173586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:38 Heat of formation + Delta-G solvation = -17.157374 kcal Electronic energy + Delta-G solvation = -27937.433176 eV Core-core repulsion = 24442.914030 eV Total energy + Delta-G solvation = -3494.519147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.09804 -38.50212 -36.91687 -34.78199 -33.67476 -31.73556 -31.01962 -30.27653 -29.86123 -28.36257 -26.23649 -24.42325 -23.56720 -23.05168 -22.44754 -21.96855 -20.58754 -19.03486 -18.83829 -17.19016 -16.22889 -16.08461 -15.65325 -15.35186 -14.91178 -14.59326 -14.30652 -14.23771 -13.89161 -13.57656 -13.46066 -13.22239 -13.10350 -12.94862 -12.51489 -12.23870 -12.00057 -11.83188 -11.61257 -11.49994 -11.35611 -11.32354 -10.99907 -10.89256 -10.78126 -10.68873 -10.57600 -10.37083 -10.01621 -9.87156 -9.77187 -9.50662 -9.29446 -8.78699 -8.72589 -8.35694 -8.04307 -7.06372 -5.96850 -4.00359 1.32042 1.47284 3.33338 3.37698 3.38086 3.40612 3.78957 4.43223 4.58138 4.65130 4.74872 4.83225 4.98993 5.05534 5.08184 5.18506 5.25921 5.35125 5.44147 5.49337 5.56687 5.68662 5.72940 5.83129 5.86821 5.92851 6.01902 6.04544 6.06991 6.17722 6.24567 6.35062 6.38680 6.48928 6.52363 6.53405 6.57545 6.65348 6.72950 6.78637 6.84404 6.88085 7.16953 7.38554 7.47286 7.67878 7.70030 7.80351 7.86870 8.24584 8.39356 8.66279 9.04683 9.63408 11.09523 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.004016 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.211349 B = 6970.573333 C = 7665.815906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C 0.218 3.782 4 H -0.004 1.004 5 C -0.496 4.496 6 H 0.061 0.939 7 C 0.061 3.939 8 N -0.892 5.892 9 Si 0.892 3.108 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.527 5.527 14 C 0.052 3.948 15 C -0.097 4.097 16 C 0.121 3.879 17 C -0.147 4.147 18 C -0.076 4.076 19 C -0.162 4.162 20 C -0.087 4.087 21 C -0.161 4.161 22 C -0.089 4.089 23 C -0.152 4.152 24 C 0.147 3.853 25 O -0.301 6.301 26 C -0.134 4.134 27 C 0.069 3.931 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.013 0.987 31 H 0.091 0.909 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.085 0.915 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.643 9.455 -15.976 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.150 4.150 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.535 4.535 6 H 0.079 0.921 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.720 3.280 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.253 5.253 14 C -0.076 4.076 15 C -0.134 4.134 16 C 0.084 3.916 17 C -0.184 4.184 18 C -0.113 4.113 19 C -0.163 4.163 20 C -0.105 4.105 21 C -0.179 4.179 22 C -0.107 4.107 23 C -0.171 4.171 24 C 0.101 3.899 25 O -0.215 6.215 26 C -0.172 4.172 27 C -0.059 4.059 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.033 0.967 31 H 0.109 0.891 32 H 0.032 0.968 33 H 0.070 0.930 34 H 0.045 0.955 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.098 0.902 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.104 0.896 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -0.976 9.124 -15.773 18.248 hybrid contribution 0.550 0.636 0.837 1.187 sum -0.426 9.761 -14.935 17.847 Atomic orbital electron populations 1.21455 0.97337 0.97169 1.01796 1.21574 0.95107 0.98237 1.00037 1.19209 0.92530 0.90776 0.86245 0.98645 1.21028 1.30929 1.11806 0.89703 0.92118 1.24884 0.95238 0.95085 0.98843 1.69868 1.36505 1.22664 1.24143 0.86665 0.79083 0.79608 0.82666 1.20272 1.21435 1.20463 1.62060 1.60059 1.01092 1.02056 1.22009 0.96984 0.98552 0.90096 1.21611 1.01463 0.91422 0.98953 1.21860 0.77957 0.97423 0.94394 1.22229 1.01724 0.95403 0.99060 1.20488 0.91556 0.96769 1.02523 1.19822 0.96175 0.94567 1.05750 1.20857 0.95092 0.95720 0.98863 1.20942 0.93763 0.99300 1.03943 1.20892 0.99676 0.92338 0.97819 1.20651 0.92988 0.98412 1.05035 1.18728 0.92510 0.84777 0.93906 1.86057 1.25150 1.26116 1.84157 1.22217 1.02123 0.98699 0.94181 1.21829 0.96304 0.90291 0.97518 0.92783 0.93458 0.96747 0.89075 0.96799 0.93017 0.95512 0.90629 0.89511 0.91618 0.90961 0.89773 0.90575 0.90238 0.86238 0.86266 0.85762 0.85407 0.90120 0.91883 0.89630 0.95967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.49 37.16 0.35 -2.26 16 2 C -0.11 -2.64 5.05 -26.74 -0.13 -2.77 16 3 C 0.22 5.40 1.76 -68.86 -0.12 5.28 16 4 H 0.00 -0.11 8.14 -51.92 -0.42 -0.54 16 5 C -0.50 -13.19 6.76 -34.44 -0.23 -13.42 16 6 H 0.06 1.62 6.52 -52.48 -0.34 1.28 16 7 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -25.21 11.31 55.43 0.63 -24.59 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 N -0.53 -10.99 3.59 -228.05 -0.82 -11.81 16 14 C 0.05 0.96 5.06 -3.82 -0.02 0.94 16 15 C -0.10 -1.42 5.11 -26.73 -0.14 -1.56 16 16 C 0.12 1.75 0.68 -90.54 -0.06 1.69 16 17 C -0.15 -1.68 5.08 -26.57 -0.13 -1.82 16 18 C -0.08 -0.83 5.21 -27.81 -0.14 -0.98 16 19 C -0.16 -2.09 5.18 -104.43 -0.54 -2.63 16 20 C -0.09 -0.98 9.66 -39.53 -0.38 -1.37 16 21 C -0.16 -1.76 10.05 -39.61 -0.40 -2.15 16 22 C -0.09 -1.04 10.04 -39.66 -0.40 -1.44 16 23 C -0.15 -2.12 9.94 -39.35 -0.39 -2.51 16 24 C 0.15 2.18 6.00 -39.20 -0.24 1.95 16 25 O -0.30 -4.88 8.66 -19.34 -0.17 -5.05 16 26 C -0.13 -2.12 4.34 -26.71 -0.12 -2.23 16 27 C 0.07 1.37 5.10 -3.82 -0.02 1.35 16 28 H 0.05 1.27 7.46 -51.93 -0.39 0.88 16 29 H 0.05 0.98 7.39 -51.93 -0.38 0.59 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 2.43 6.03 -51.93 -0.31 2.11 16 32 H 0.01 0.30 6.33 -51.93 -0.33 -0.03 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.03 0.53 7.81 -51.93 -0.41 0.13 16 35 H 0.08 1.39 5.99 -51.93 -0.31 1.08 16 36 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.85 7.07 -51.93 -0.37 0.48 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 45 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.96 5.99 -51.93 -0.31 0.65 16 48 H 0.09 1.85 6.12 -51.93 -0.32 1.53 16 49 H 0.02 0.48 7.80 -51.93 -0.41 0.07 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -28.58 364.42 -11.18 -39.76 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.08 Total: 2.39 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -3.21 Total: -22.38 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.19 Total: -36.39 kcal Atomic # 8 Polarization: -4.88 SS G_CDS: -0.17 Total: -5.05 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.58 -11.18 -39.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.601 kcal (2) G-P(sol) polarization free energy of solvation -28.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds