Wall clock time and date at job start Tue Mar 31 2020 11:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47239 * 2 1 4 4 H 1.09008 * 109.47707 * 181.53361 * 3 2 1 5 5 C 1.50703 * 109.47406 * 61.53422 * 3 2 1 6 6 H 1.08007 * 119.99655 * 240.00437 * 5 3 2 7 7 C 1.37867 * 120.00005 * 59.99761 * 5 3 2 8 8 N 1.31513 * 120.00339 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99953 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46782 * 60.00365 * 9 7 5 11 11 H 1.48498 * 109.47249 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47236 * 300.00217 * 9 7 5 13 13 N 1.46905 * 109.47136 * 301.53130 * 3 2 1 14 14 C 1.46847 * 110.99680 * 301.67511 * 13 3 2 15 15 C 1.53056 * 109.51147 * 174.09971 * 14 13 3 16 16 C 1.52949 * 109.32158 * 58.93353 * 15 14 13 17 17 C 1.53243 * 109.54842 * 182.50199 * 16 15 14 18 18 C 1.53077 * 108.35091 * 175.56087 * 17 16 15 19 19 C 1.50777 * 109.71787 * 47.86577 * 18 17 16 20 20 C 1.38519 * 118.73211 * 162.28776 * 19 18 17 21 21 C 1.38109 * 120.33439 * 179.75070 * 20 19 18 22 22 C 1.38297 * 119.96893 * 359.97438 * 21 20 19 23 23 C 1.37968 * 119.96483 * 0.10501 * 22 21 20 24 24 C 1.38366 * 121.46270 * 342.24005 * 19 18 17 25 25 O 1.35872 * 121.77975 * 0.66189 * 24 19 18 26 26 C 1.52967 * 109.44373 * 302.64342 * 16 15 14 27 27 C 1.46847 * 111.00138 * 177.43782 * 13 3 2 28 28 H 1.08994 * 109.47612 * 294.54370 * 1 2 3 29 29 H 1.09005 * 109.46955 * 54.55122 * 1 2 3 30 30 H 1.09004 * 109.47324 * 174.54510 * 1 2 3 31 31 H 1.09007 * 109.47316 * 120.00031 * 2 1 3 32 32 H 1.08999 * 109.47464 * 239.99526 * 2 1 3 33 33 H 0.97004 * 120.00471 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46588 * 294.10912 * 14 13 3 35 35 H 1.08996 * 109.46489 * 54.08709 * 14 13 3 36 36 H 1.09007 * 109.49664 * 298.98044 * 15 14 13 37 37 H 1.09003 * 109.49810 * 178.88503 * 15 14 13 38 38 H 1.08997 * 109.69216 * 295.28429 * 17 16 15 39 39 H 1.09001 * 109.68724 * 55.85254 * 17 16 15 40 40 H 1.09003 * 109.42812 * 167.93711 * 18 17 16 41 41 H 1.09001 * 109.43634 * 287.78945 * 18 17 16 42 42 H 1.07998 * 119.83633 * 359.71578 * 20 19 18 43 43 H 1.08000 * 120.01233 * 179.97438 * 21 20 19 44 44 H 1.08000 * 120.01759 * 180.08297 * 22 21 20 45 45 H 1.07997 * 119.89734 * 179.97438 * 23 22 21 46 46 H 1.09004 * 109.49952 * 297.45362 * 26 16 15 47 47 H 1.09006 * 109.50029 * 177.33709 * 26 16 15 48 48 H 1.08995 * 109.46982 * 305.96782 * 27 13 3 49 49 H 1.09000 * 109.46712 * 65.95826 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1297 1.4426 -0.0275 5 6 1.5690 2.1418 1.2490 6 1 0.9458 3.0208 1.1734 7 6 1.9334 1.6597 2.4882 8 7 2.6925 0.5897 2.5803 9 14 1.3490 2.5263 4.0364 10 1 -0.1355 2.5255 4.0736 11 1 1.8749 1.8160 5.2298 12 1 1.8435 3.9265 4.0366 13 7 1.5203 2.1456 -1.1805 14 6 1.9272 1.4678 -2.4181 15 6 1.2495 2.1390 -3.6151 16 6 1.6479 3.6151 -3.6600 17 6 0.9232 4.3067 -4.8197 18 6 1.2533 5.8007 -4.7718 19 6 2.7402 5.9881 -4.6065 20 6 3.2934 7.2217 -4.9078 21 6 4.6508 7.4315 -4.7635 22 6 5.4644 6.4067 -4.3156 23 6 4.9195 5.1753 -4.0154 24 6 3.5528 4.9599 -4.1627 25 8 3.0547 3.7307 -3.8675 26 6 1.2617 4.2870 -2.3412 27 6 1.9404 3.5526 -1.1823 28 1 -0.3634 0.4268 0.9347 29 1 -0.3633 0.5960 -0.8372 30 1 -0.3634 -1.0230 -0.0977 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 2.9487 0.2503 3.4521 34 1 3.0095 1.5339 -2.5294 35 1 1.6301 0.4201 -2.3730 36 1 0.1673 2.0572 -3.5135 37 1 1.5671 1.6484 -4.5352 38 1 1.2609 3.8861 -5.7668 39 1 -0.1527 4.1649 -4.7171 40 1 0.9291 6.2735 -5.6989 41 1 0.7342 6.2600 -3.9305 42 1 2.6602 8.0235 -5.2579 43 1 5.0767 8.3953 -5.0004 44 1 6.5258 6.5703 -4.2012 45 1 5.5559 4.3757 -3.6662 46 1 0.1799 4.2455 -2.2147 47 1 1.5876 5.3272 -2.3537 48 1 1.6538 4.0185 -0.2395 49 1 3.0225 3.6085 -1.3009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255173586.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:37 Heat of formation + Delta-G solvation = -31.315760 kcal Electronic energy + Delta-G solvation = -27938.047130 eV Core-core repulsion = 24442.914030 eV Total energy + Delta-G solvation = -3495.133100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.17251 -39.79139 -38.27863 -36.06698 -35.07845 -33.47281 -32.52467 -31.50653 -31.00859 -29.66032 -28.01658 -25.77591 -25.13874 -24.22310 -23.64942 -23.24366 -22.01686 -20.70153 -19.98981 -18.21934 -18.13678 -17.58618 -16.92404 -16.61267 -16.12504 -15.96722 -15.68318 -15.39406 -15.23306 -15.00349 -14.96921 -14.65463 -14.19300 -14.11343 -13.92309 -13.76313 -13.40283 -13.23551 -12.88000 -12.86759 -12.77002 -12.61687 -12.48982 -12.36850 -12.30190 -12.17821 -12.02550 -11.79403 -11.67794 -11.48827 -11.30669 -11.20656 -10.80966 -10.68154 -10.42002 -9.69870 -9.04573 -8.88634 -8.07510 -6.17784 0.39936 0.52121 1.41596 1.42634 1.49930 2.34503 2.43014 2.85163 3.19793 3.36439 3.62705 3.64756 3.76949 3.87888 3.95698 4.18820 4.24898 4.29516 4.35527 4.44723 4.53986 4.57785 4.59334 4.63891 4.65018 4.67896 4.76538 4.86644 4.90367 4.91940 4.96261 4.98138 5.05127 5.10626 5.14257 5.19469 5.24931 5.27951 5.31120 5.42801 5.47906 5.54234 5.58219 5.61659 5.73658 5.80173 5.91120 5.96618 6.32366 6.42409 6.64693 6.77821 6.95109 7.49800 8.98071 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016621 B = 0.004016 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.211349 B = 6970.573333 C = 7665.815906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.106 4.106 3 C 0.223 3.777 4 H -0.057 1.057 5 C -0.503 4.503 6 H 0.058 0.942 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.268 1.268 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.519 5.519 14 C 0.053 3.947 15 C -0.090 4.090 16 C 0.117 3.883 17 C -0.138 4.138 18 C -0.076 4.076 19 C -0.170 4.170 20 C -0.089 4.089 21 C -0.159 4.159 22 C -0.093 4.093 23 C -0.181 4.181 24 C 0.115 3.885 25 O -0.328 6.328 26 C -0.121 4.121 27 C 0.073 3.927 28 H 0.031 0.969 29 H 0.059 0.941 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.000 1.000 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.107 0.893 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.150 0.850 43 H 0.150 0.850 44 H 0.145 0.855 45 H 0.112 0.888 46 H 0.095 0.905 47 H 0.068 0.932 48 H 0.062 0.938 49 H -0.009 1.009 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.870 11.576 -17.953 21.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.145 4.145 3 C 0.116 3.884 4 H -0.039 1.039 5 C -0.542 4.542 6 H 0.076 0.924 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.778 3.222 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.243 5.243 14 C -0.076 4.076 15 C -0.127 4.127 16 C 0.079 3.921 17 C -0.175 4.175 18 C -0.112 4.112 19 C -0.171 4.171 20 C -0.107 4.107 21 C -0.177 4.177 22 C -0.111 4.111 23 C -0.200 4.200 24 C 0.070 3.930 25 O -0.243 6.243 26 C -0.159 4.159 27 C -0.055 4.055 28 H 0.050 0.950 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.018 0.982 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.168 0.832 43 H 0.167 0.833 44 H 0.162 0.838 45 H 0.130 0.870 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.081 0.919 49 H 0.009 0.991 Dipole moment (debyes) X Y Z Total from point charges -3.210 11.258 -17.770 21.279 hybrid contribution 1.377 0.006 1.426 1.982 sum -1.833 11.264 -16.344 19.934 Atomic orbital electron populations 1.21303 0.95201 0.98796 1.01043 1.21434 0.96839 0.97077 0.99124 1.19013 0.89477 0.92113 0.87766 1.03931 1.21237 1.30610 1.11684 0.90644 0.92418 1.25631 0.95390 0.95718 1.01774 1.70019 1.37545 1.23930 1.24614 0.85699 0.78949 0.78486 0.79046 1.19304 1.21220 1.20132 1.62067 1.59108 1.01377 1.01795 1.22065 0.95936 0.98957 0.90599 1.21606 1.02081 0.91600 0.97440 1.21926 0.78008 0.97265 0.94877 1.22187 1.02509 0.95445 0.97404 1.20575 0.90076 0.96510 1.04083 1.20135 0.97282 0.94485 1.05160 1.21271 0.95686 0.95826 0.97872 1.21359 0.93804 1.00084 1.02424 1.21186 1.01017 0.91647 0.97285 1.20812 0.93221 0.99329 1.06592 1.19021 0.93128 0.85144 0.95694 1.86024 1.26121 1.27384 1.84782 1.22106 1.02259 0.98371 0.93163 1.21761 0.94940 0.90206 0.98615 0.94993 0.92193 0.94264 0.92182 0.95498 0.93170 0.98173 0.90595 0.87568 0.89749 0.90513 0.87439 0.87869 0.89728 0.83207 0.83272 0.83770 0.86955 0.88658 0.91337 0.91942 0.99067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.54 9.49 71.98 0.68 -3.86 16 2 C -0.11 -5.19 5.05 30.59 0.15 -5.04 16 3 C 0.22 11.63 1.76 44.17 0.08 11.71 16 4 H -0.06 -3.47 8.14 -2.38 -0.02 -3.49 16 5 C -0.50 -27.74 6.76 25.60 0.17 -27.56 16 6 H 0.06 3.16 6.52 -2.91 -0.02 3.14 16 7 C 0.01 0.74 5.30 84.65 0.45 1.18 16 8 N -0.92 -54.07 11.31 21.44 0.24 -53.83 16 9 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 N -0.52 -22.27 3.59 -875.42 -3.14 -25.41 16 14 C 0.05 1.97 5.06 86.33 0.44 2.41 16 15 C -0.09 -2.50 5.11 30.60 0.16 -2.34 16 16 C 0.12 3.22 0.68 -10.74 -0.01 3.22 16 17 C -0.14 -2.71 5.08 30.70 0.16 -2.55 16 18 C -0.08 -1.38 5.21 29.90 0.16 -1.23 16 19 C -0.17 -4.02 5.18 -19.74 -0.10 -4.13 16 20 C -0.09 -1.73 9.66 22.31 0.22 -1.51 16 21 C -0.16 -3.04 10.05 22.25 0.22 -2.82 16 22 C -0.09 -2.11 10.04 22.22 0.22 -1.89 16 23 C -0.18 -5.25 9.94 22.42 0.22 -5.02 16 24 C 0.12 3.45 6.00 22.52 0.14 3.58 16 25 O -0.33 -10.88 8.66 -92.12 -0.80 -11.68 16 26 C -0.12 -3.73 4.34 30.60 0.13 -3.60 16 27 C 0.07 3.04 5.10 86.34 0.44 3.49 16 28 H 0.03 1.48 7.46 -2.39 -0.02 1.46 16 29 H 0.06 2.38 7.39 -2.38 -0.02 2.37 16 30 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 3.33 6.03 -2.38 -0.01 3.31 16 32 H 0.03 1.20 6.33 -2.39 -0.02 1.19 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.00 0.00 7.81 -2.39 -0.02 -0.02 16 35 H 0.08 2.80 5.99 -2.39 -0.01 2.78 16 36 H 0.11 2.58 8.14 -2.38 -0.02 2.56 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.48 7.07 -2.39 -0.02 1.46 16 42 H 0.15 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.14 2.52 8.06 -2.91 -0.02 2.49 16 45 H 0.11 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 47 H 0.07 2.03 5.99 -2.38 -0.01 2.02 16 48 H 0.06 2.83 6.12 -2.39 -0.01 2.82 16 49 H -0.01 -0.42 7.80 -2.39 -0.02 -0.44 16 Total: -1.00 -66.19 364.42 3.18 -63.01 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: 0.92 Total: 17.59 kcal Atomic # 6 Polarization: -39.89 SS G_CDS: 3.93 Total: -35.96 kcal Atomic # 7 Polarization: -76.34 SS G_CDS: -2.90 Total: -79.24 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.80 Total: -11.68 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -66.19 3.18 -63.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255173586.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.696 kcal (2) G-P(sol) polarization free energy of solvation -66.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds