Wall clock time and date at job start Tue Mar 31 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 H 1.08995 * 109.47636 * 54.99928 * 3 2 1 5 5 C 1.50698 * 109.47030 * 175.00158 * 3 2 1 6 6 H 1.07997 * 120.00683 * 114.54181 * 5 3 2 7 7 C 1.37880 * 120.00042 * 294.54153 * 5 3 2 8 8 N 1.31521 * 119.99731 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00421 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46851 * 90.00068 * 9 7 5 11 11 H 1.48497 * 109.47099 * 210.00292 * 9 7 5 12 12 H 1.48501 * 109.46613 * 330.00159 * 9 7 5 13 13 N 1.46903 * 109.47098 * 294.99762 * 3 2 1 14 14 C 1.47705 * 111.00004 * 173.48518 * 13 3 2 15 15 C 1.52377 * 87.59179 * 222.18663 * 14 13 3 16 16 C 1.52647 * 121.97809 * 149.99962 * 15 14 13 17 17 C 1.54005 * 86.68073 * 152.07607 * 16 15 14 18 18 O 1.42899 * 113.63643 * 220.85143 * 17 16 15 19 19 C 1.42901 * 113.99739 * 247.83113 * 18 17 16 20 20 C 1.50701 * 109.47163 * 180.02562 * 19 18 17 21 21 C 1.38235 * 119.99614 * 269.72528 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.76290 * 21 20 19 23 23 C 1.38238 * 120.00044 * 0.49008 * 22 21 20 24 24 C 1.38236 * 119.99789 * 359.78631 * 23 22 21 25 25 C 1.38230 * 120.00106 * 89.99496 * 20 19 18 26 26 C 1.52646 * 121.97867 * 260.47015 * 15 14 13 27 27 C 1.47705 * 111.00074 * 77.13717 * 13 3 2 28 28 H 1.09001 * 109.47324 * 300.00292 * 1 2 3 29 29 H 1.09002 * 109.47249 * 60.00240 * 1 2 3 30 30 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47184 * 239.99952 * 2 1 3 32 32 H 1.09000 * 109.46986 * 119.99289 * 2 1 3 33 33 H 0.96993 * 119.99834 * 179.97438 * 8 7 5 34 34 H 1.09002 * 113.53281 * 336.86504 * 14 13 3 35 35 H 1.09006 * 113.53089 * 107.50873 * 14 13 3 36 36 H 1.08997 * 113.67609 * 266.52031 * 16 15 14 37 37 H 1.08991 * 113.68001 * 37.62631 * 16 15 14 38 38 H 1.09005 * 113.56662 * 90.09773 * 17 16 15 39 39 H 1.09009 * 109.46725 * 300.00064 * 19 18 17 40 40 H 1.08996 * 109.47014 * 59.99564 * 19 18 17 41 41 H 1.07991 * 120.00353 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.00205 * 180.25199 * 22 21 20 43 43 H 1.07999 * 120.00320 * 179.76866 * 23 22 21 44 44 H 1.08000 * 120.00117 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00404 * 0.02562 * 25 20 19 46 46 H 1.09004 * 113.67699 * 322.36818 * 26 15 14 47 47 H 1.08997 * 113.67622 * 93.47262 * 26 15 14 48 48 H 1.08997 * 113.52985 * 252.49122 * 27 13 3 49 49 H 1.09000 * 113.52633 * 23.06389 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5418 1.4443 0.1238 6 1 4.1504 1.8086 -0.6906 7 6 4.1391 0.9810 1.2769 8 7 3.3980 0.5378 2.2690 9 14 6.0008 0.9838 1.4307 10 1 6.4472 2.2744 2.0141 11 1 6.4262 -0.1319 2.3134 12 1 6.6087 0.8114 0.0869 13 7 1.6513 2.0992 -1.2553 14 6 1.9901 3.5367 -1.2276 15 6 0.6366 3.8023 -1.8752 16 6 -0.1361 5.0961 -1.6317 17 6 -0.7548 4.8837 -3.0259 18 8 -0.8708 6.0855 -3.7903 19 6 -2.2186 6.5054 -4.0120 20 6 -2.2222 7.7747 -4.8243 21 6 -2.1944 9.0020 -4.1887 22 6 -2.1927 10.1663 -4.9339 23 6 -2.2291 10.1035 -6.3143 24 6 -2.2626 8.8763 -6.9497 25 6 -2.2589 7.7119 -6.2047 26 6 0.4925 4.0504 -3.3744 27 6 0.2253 2.4835 -1.2322 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8181 0.2115 3.0800 34 1 2.0779 3.9438 -0.2202 35 1 2.8358 3.7968 -1.8643 36 1 -0.8577 5.0283 -0.8177 37 1 0.4991 5.9792 -1.5645 38 1 -1.6767 4.3023 -3.0097 39 1 -2.7574 5.7270 -4.5526 40 1 -2.7054 6.6855 -3.0536 41 1 -2.1706 9.0512 -3.1102 42 1 -2.1669 11.1251 -4.4375 43 1 -2.2315 11.0132 -6.8965 44 1 -2.2914 8.8272 -8.0282 45 1 -2.2854 6.7531 -6.7012 46 1 1.3059 4.6373 -3.8012 47 1 0.2715 3.1501 -3.9478 48 1 -0.4026 1.8643 -1.8728 49 1 -0.1788 2.5959 -0.2262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:01 Heat of formation + Delta-G solvation = 38.895664 kcal Electronic energy + Delta-G solvation = -25756.983948 eV Core-core repulsion = 22264.895444 eV Total energy + Delta-G solvation = -3492.088504 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.57748 -39.53372 -37.82826 -35.50333 -33.18497 -31.88080 -31.35181 -31.15571 -27.95853 -26.33035 -25.62228 -25.29745 -24.39562 -22.83382 -22.65326 -21.57577 -20.91965 -19.40133 -17.69412 -17.15659 -16.71524 -16.39885 -15.83405 -15.72568 -15.36720 -14.82838 -14.49878 -14.30633 -14.02317 -13.83293 -13.63683 -13.28365 -13.06613 -12.69551 -12.57530 -12.25788 -12.16841 -11.93919 -11.65118 -11.57471 -11.41184 -11.24209 -11.19098 -10.97998 -10.89450 -10.74770 -10.55181 -10.36015 -9.96553 -9.62756 -9.52710 -9.38281 -9.17176 -9.15633 -9.04282 -8.80331 -8.43560 -7.68330 -6.02465 -4.06153 1.01714 1.15074 3.30498 3.35352 3.37188 3.41846 3.93090 4.41283 4.54192 4.56010 4.65409 4.73218 4.80540 4.83198 4.89446 4.94654 5.06123 5.11793 5.21844 5.29516 5.33184 5.37412 5.40667 5.71043 5.78337 5.83453 5.95560 5.99815 6.07006 6.15922 6.18324 6.19290 6.23631 6.24013 6.29316 6.35466 6.36587 6.43247 6.49791 6.58910 6.72251 6.73604 6.80674 6.96034 7.11906 7.25885 7.44443 7.51946 7.83147 8.03513 8.29099 8.50742 9.01675 9.58874 11.05379 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.002271 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.654776 B =12325.390151 C =12914.676194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.106 4.106 3 C 0.186 3.814 4 H 0.010 0.990 5 C -0.504 4.504 6 H 0.060 0.940 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.464 5.464 14 C 0.039 3.961 15 C -0.122 4.122 16 C -0.139 4.139 17 C 0.062 3.938 18 O -0.368 6.368 19 C 0.100 3.900 20 C -0.087 4.087 21 C -0.099 4.099 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.125 4.125 25 C -0.099 4.099 26 C -0.096 4.096 27 C 0.025 3.975 28 H 0.039 0.961 29 H 0.053 0.947 30 H 0.031 0.969 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.260 0.740 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.090 0.910 47 H 0.074 0.926 48 H 0.074 0.926 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.291 14.899 -13.516 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.144 4.144 3 C 0.078 3.922 4 H 0.028 0.972 5 C -0.543 4.543 6 H 0.079 0.921 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.187 5.187 14 C -0.090 4.090 15 C -0.123 4.123 16 C -0.177 4.177 17 C 0.005 3.995 18 O -0.287 6.287 19 C 0.024 3.976 20 C -0.087 4.087 21 C -0.117 4.117 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.134 4.134 27 C -0.104 4.104 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.108 0.892 47 H 0.092 0.908 48 H 0.092 0.908 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.826 14.428 -13.888 24.335 hybrid contribution 0.552 0.230 1.152 1.298 sum -13.274 14.658 -12.735 23.521 Atomic orbital electron populations 1.22176 0.99571 0.99447 1.00532 1.21467 0.91545 0.99553 1.01867 1.19800 0.95802 0.91503 0.85046 0.97239 1.21076 0.90835 1.41660 1.00699 0.92145 1.24945 0.98198 0.95328 0.95717 1.69926 1.34884 1.42722 1.05608 0.86550 0.85665 0.77524 0.78014 1.20781 1.21282 1.19838 1.68949 1.03062 1.09865 1.36797 1.23201 0.94951 0.91507 0.99380 1.22392 0.98828 0.94801 0.96283 1.23276 0.99523 0.98424 0.96522 1.23851 0.98174 0.85679 0.91812 1.88038 1.24674 1.42312 1.73677 1.21331 0.85258 0.93206 0.97817 1.19679 1.00981 0.94215 0.93838 1.21101 0.98613 0.91893 1.00112 1.21158 1.00628 0.98286 0.94166 1.21193 0.99822 0.97804 0.94770 1.21153 1.00686 0.92508 0.99915 1.21092 0.98747 0.98645 0.93271 1.22728 0.96829 0.98669 0.95150 1.23568 0.95207 0.92630 0.98954 0.94189 0.92861 0.94979 0.94046 0.89821 0.93002 0.91547 0.90996 0.91485 0.89226 0.89767 0.92573 0.92536 0.85888 0.85963 0.86113 0.85973 0.85906 0.89163 0.90757 0.90804 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.82 37.16 0.33 -2.84 16 2 C -0.11 -2.54 5.49 -26.73 -0.15 -2.68 16 3 C 0.19 4.62 1.23 -68.86 -0.08 4.54 16 4 H 0.01 0.27 7.58 -51.93 -0.39 -0.12 16 5 C -0.50 -13.87 8.09 -34.44 -0.28 -14.15 16 6 H 0.06 1.69 7.77 -52.49 -0.41 1.28 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 8 N -0.89 -25.47 11.72 55.43 0.65 -24.82 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.46 -9.92 6.11 -237.75 -1.45 -11.38 16 14 C 0.04 0.75 6.86 -6.75 -0.05 0.70 16 15 C -0.12 -1.92 1.31 -155.54 -0.20 -2.12 16 16 C -0.14 -1.87 7.73 -26.39 -0.20 -2.08 16 17 C 0.06 0.77 4.31 -25.70 -0.11 0.66 16 18 O -0.37 -4.69 10.34 -35.23 -0.36 -5.06 16 19 C 0.10 1.01 5.90 36.01 0.21 1.22 16 20 C -0.09 -0.88 5.51 -104.63 -0.58 -1.46 16 21 C -0.10 -0.94 9.70 -39.58 -0.38 -1.32 16 22 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 23 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 24 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 25 C -0.10 -0.93 9.70 -39.59 -0.38 -1.31 16 26 C -0.10 -1.34 7.73 -26.39 -0.20 -1.55 16 27 C 0.03 0.45 5.11 -6.75 -0.03 0.41 16 28 H 0.04 0.79 8.13 -51.93 -0.42 0.36 16 29 H 0.05 0.97 4.61 -51.93 -0.24 0.73 16 30 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.08 2.23 6.42 -51.93 -0.33 1.90 16 33 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.07 1.37 7.83 -51.93 -0.41 0.97 16 35 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.08 0.92 7.87 -51.93 -0.41 0.51 16 39 H 0.06 0.49 8.09 -51.92 -0.42 0.07 16 40 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 47 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 48 H 0.07 1.21 6.79 -51.93 -0.35 0.86 16 49 H 0.06 1.15 7.22 -51.93 -0.37 0.78 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -29.64 387.94 -12.14 -41.78 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -8.39 Total: 1.80 kcal Atomic # 6 Polarization: -21.23 SS G_CDS: -3.41 Total: -24.64 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: -0.80 Total: -36.20 kcal Atomic # 8 Polarization: -4.69 SS G_CDS: -0.36 Total: -5.06 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.64 -12.14 -41.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.676 kcal (2) G-P(sol) polarization free energy of solvation -29.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds