Wall clock time and date at job start Tue Mar 31 2020 11:45:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46920 * 2 1 4 4 H 1.08995 * 109.47636 * 54.99928 * 3 2 1 5 5 C 1.50698 * 109.47030 * 175.00158 * 3 2 1 6 6 H 1.07997 * 120.00683 * 114.54181 * 5 3 2 7 7 C 1.37880 * 120.00042 * 294.54153 * 5 3 2 8 8 N 1.31521 * 119.99731 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00421 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46851 * 90.00068 * 9 7 5 11 11 H 1.48497 * 109.47099 * 210.00292 * 9 7 5 12 12 H 1.48501 * 109.46613 * 330.00159 * 9 7 5 13 13 N 1.46903 * 109.47098 * 294.99762 * 3 2 1 14 14 C 1.47705 * 111.00004 * 173.48518 * 13 3 2 15 15 C 1.52377 * 87.59179 * 222.18663 * 14 13 3 16 16 C 1.52647 * 121.97809 * 149.99962 * 15 14 13 17 17 C 1.54005 * 86.68073 * 152.07607 * 16 15 14 18 18 O 1.42899 * 113.63643 * 220.85143 * 17 16 15 19 19 C 1.42901 * 113.99739 * 247.83113 * 18 17 16 20 20 C 1.50701 * 109.47163 * 180.02562 * 19 18 17 21 21 C 1.38235 * 119.99614 * 269.72528 * 20 19 18 22 22 C 1.38235 * 119.99712 * 179.76290 * 21 20 19 23 23 C 1.38238 * 120.00044 * 0.49008 * 22 21 20 24 24 C 1.38236 * 119.99789 * 359.78631 * 23 22 21 25 25 C 1.38230 * 120.00106 * 89.99496 * 20 19 18 26 26 C 1.52646 * 121.97867 * 260.47015 * 15 14 13 27 27 C 1.47705 * 111.00074 * 77.13717 * 13 3 2 28 28 H 1.09001 * 109.47324 * 300.00292 * 1 2 3 29 29 H 1.09002 * 109.47249 * 60.00240 * 1 2 3 30 30 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47184 * 239.99952 * 2 1 3 32 32 H 1.09000 * 109.46986 * 119.99289 * 2 1 3 33 33 H 0.96993 * 119.99834 * 179.97438 * 8 7 5 34 34 H 1.09002 * 113.53281 * 336.86504 * 14 13 3 35 35 H 1.09006 * 113.53089 * 107.50873 * 14 13 3 36 36 H 1.08997 * 113.67609 * 266.52031 * 16 15 14 37 37 H 1.08991 * 113.68001 * 37.62631 * 16 15 14 38 38 H 1.09005 * 113.56662 * 90.09773 * 17 16 15 39 39 H 1.09009 * 109.46725 * 300.00064 * 19 18 17 40 40 H 1.08996 * 109.47014 * 59.99564 * 19 18 17 41 41 H 1.07991 * 120.00353 * 359.97438 * 21 20 19 42 42 H 1.07999 * 120.00205 * 180.25199 * 22 21 20 43 43 H 1.07999 * 120.00320 * 179.76866 * 23 22 21 44 44 H 1.08000 * 120.00117 * 179.97438 * 24 23 22 45 45 H 1.08002 * 120.00404 * 0.02562 * 25 20 19 46 46 H 1.09004 * 113.67699 * 322.36818 * 26 15 14 47 47 H 1.08997 * 113.67622 * 93.47262 * 26 15 14 48 48 H 1.08997 * 113.52985 * 252.49122 * 27 13 3 49 49 H 1.09000 * 113.52633 * 23.06389 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5418 1.4443 0.1238 6 1 4.1504 1.8086 -0.6906 7 6 4.1391 0.9810 1.2769 8 7 3.3980 0.5378 2.2690 9 14 6.0008 0.9838 1.4307 10 1 6.4472 2.2744 2.0141 11 1 6.4262 -0.1319 2.3134 12 1 6.6087 0.8114 0.0869 13 7 1.6513 2.0992 -1.2553 14 6 1.9901 3.5367 -1.2276 15 6 0.6366 3.8023 -1.8752 16 6 -0.1361 5.0961 -1.6317 17 6 -0.7548 4.8837 -3.0259 18 8 -0.8708 6.0855 -3.7903 19 6 -2.2186 6.5054 -4.0120 20 6 -2.2222 7.7747 -4.8243 21 6 -2.1944 9.0020 -4.1887 22 6 -2.1927 10.1663 -4.9339 23 6 -2.2291 10.1035 -6.3143 24 6 -2.2626 8.8763 -6.9497 25 6 -2.2589 7.7119 -6.2047 26 6 0.4925 4.0504 -3.3744 27 6 0.2253 2.4835 -1.2322 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 3.8181 0.2115 3.0800 34 1 2.0779 3.9438 -0.2202 35 1 2.8358 3.7968 -1.8643 36 1 -0.8577 5.0283 -0.8177 37 1 0.4991 5.9792 -1.5645 38 1 -1.6767 4.3023 -3.0097 39 1 -2.7574 5.7270 -4.5526 40 1 -2.7054 6.6855 -3.0536 41 1 -2.1706 9.0512 -3.1102 42 1 -2.1669 11.1251 -4.4375 43 1 -2.2315 11.0132 -6.8965 44 1 -2.2914 8.8272 -8.0282 45 1 -2.2854 6.7531 -6.7012 46 1 1.3059 4.6373 -3.8012 47 1 0.2715 3.1501 -3.9478 48 1 -0.4026 1.8643 -1.8728 49 1 -0.1788 2.5959 -0.2262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176283.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:01 Heat of formation + Delta-G solvation = 22.595716 kcal Electronic energy + Delta-G solvation = -25757.690767 eV Core-core repulsion = 22264.895444 eV Total energy + Delta-G solvation = -3492.795323 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.93901 -40.22475 -38.94608 -36.85593 -34.89373 -33.36348 -32.50403 -31.77078 -29.75698 -27.25418 -26.76068 -26.68004 -26.15174 -24.27528 -23.45617 -22.30265 -22.14460 -21.24208 -18.98397 -18.43206 -17.96002 -17.58724 -17.05925 -16.67024 -16.41371 -16.34566 -15.81776 -15.49129 -15.38822 -14.97564 -14.60737 -14.38603 -14.24079 -13.92939 -13.80100 -13.61344 -13.43303 -13.28302 -13.17725 -12.92990 -12.81661 -12.73599 -12.59376 -12.33058 -12.22531 -12.01435 -11.89111 -11.74343 -11.63822 -11.33369 -10.96028 -10.82660 -10.66349 -10.51383 -10.34137 -9.80520 -9.73426 -9.43472 -8.15238 -6.25868 0.36484 0.51705 1.37810 1.38896 1.49671 2.39618 2.61886 3.11292 3.14629 3.28385 3.47239 3.69054 3.79637 3.95509 3.95651 4.01909 4.17546 4.19263 4.30785 4.38539 4.40409 4.50357 4.53753 4.59976 4.64835 4.67641 4.74507 4.77324 4.79512 4.87560 4.89335 4.90450 4.96226 5.08674 5.10129 5.17192 5.17870 5.20561 5.25243 5.30873 5.43548 5.54496 5.57022 5.58833 5.62707 5.69678 5.72350 6.09587 6.11748 6.29259 6.37282 6.59576 6.89317 7.42945 8.91582 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.024957 B = 0.002271 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.654776 B =12325.390151 C =12914.676194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.102 4.102 3 C 0.194 3.806 4 H -0.024 1.024 5 C -0.522 4.522 6 H 0.048 0.952 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.956 3.044 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.271 1.271 13 N -0.479 5.479 14 C 0.031 3.969 15 C -0.108 4.108 16 C -0.136 4.136 17 C 0.078 3.922 18 O -0.385 6.385 19 C 0.098 3.902 20 C -0.107 4.107 21 C -0.115 4.115 22 C -0.133 4.133 23 C -0.123 4.123 24 C -0.132 4.132 25 C -0.114 4.114 26 C -0.096 4.096 27 C 0.030 3.970 28 H 0.035 0.965 29 H 0.073 0.927 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.051 0.949 33 H 0.262 0.738 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.128 0.872 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.095 0.905 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.577 15.840 -15.082 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 C 0.086 3.914 4 H -0.006 1.006 5 C -0.561 4.561 6 H 0.067 0.933 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.781 3.219 10 H -0.202 1.202 11 H -0.207 1.207 12 H -0.196 1.196 13 N -0.201 5.201 14 C -0.098 4.098 15 C -0.109 4.109 16 C -0.174 4.174 17 C 0.021 3.979 18 O -0.304 6.304 19 C 0.022 3.978 20 C -0.107 4.107 21 C -0.133 4.133 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.150 4.150 25 C -0.132 4.132 26 C -0.133 4.133 27 C -0.099 4.099 28 H 0.055 0.945 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.146 0.854 42 H 0.158 0.842 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.149 0.851 46 H 0.103 0.897 47 H 0.100 0.900 48 H 0.113 0.887 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.123 15.379 -15.466 26.541 hybrid contribution 0.951 0.012 1.592 1.854 sum -14.172 15.392 -13.874 25.105 Atomic orbital electron populations 1.22043 0.96117 1.01040 1.01316 1.21316 0.94661 0.98347 0.99761 1.19556 0.94304 0.92001 0.85521 1.00622 1.21351 0.92504 1.41677 1.00539 0.93340 1.25689 1.02474 0.95012 0.95447 1.70041 1.36485 1.43237 1.05945 0.85593 0.80559 0.77745 0.77980 1.20151 1.20653 1.19606 1.68878 1.05961 1.10849 1.34445 1.23193 0.97310 0.90642 0.98664 1.22247 0.95824 0.95207 0.97627 1.23262 0.99366 0.96681 0.98057 1.23687 0.98201 0.85656 0.90399 1.88012 1.26574 1.42277 1.73561 1.21485 0.84083 0.93671 0.98580 1.19836 1.02051 0.94474 0.94363 1.21307 0.99098 0.92281 1.00644 1.21459 1.00166 0.98800 0.94636 1.21543 0.98915 0.98702 0.94911 1.21470 1.00079 0.92358 1.01055 1.21317 0.99017 0.99553 0.93269 1.22736 0.97775 0.99339 0.93494 1.23551 0.93129 0.93923 0.99288 0.94536 0.90873 0.92995 0.94874 0.93049 0.92942 0.93656 0.91636 0.90378 0.89639 0.87523 0.91178 0.91617 0.85433 0.84186 0.83875 0.84012 0.85117 0.89692 0.90048 0.88740 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.71 8.82 71.98 0.63 -5.08 16 2 C -0.10 -4.99 5.49 30.59 0.17 -4.82 16 3 C 0.19 9.95 1.23 44.17 0.05 10.01 16 4 H -0.02 -1.36 7.58 -2.39 -0.02 -1.37 16 5 C -0.52 -29.65 8.09 25.60 0.21 -29.44 16 6 H 0.05 2.80 7.77 -2.91 -0.02 2.77 16 7 C 0.01 0.72 5.30 84.65 0.45 1.17 16 8 N -0.92 -53.74 11.72 21.45 0.25 -53.49 16 9 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 13 N -0.48 -20.67 6.11 -906.09 -5.54 -26.21 16 14 C 0.03 1.24 6.86 83.97 0.58 1.81 16 15 C -0.11 -3.28 1.31 -52.84 -0.07 -3.35 16 16 C -0.14 -3.42 7.73 30.82 0.24 -3.18 16 17 C 0.08 1.73 4.31 31.26 0.13 1.87 16 18 O -0.38 -9.04 10.34 -148.98 -1.54 -10.58 16 19 C 0.10 1.77 5.90 71.24 0.42 2.19 16 20 C -0.11 -2.03 5.51 -19.87 -0.11 -2.14 16 21 C -0.12 -2.05 9.70 22.27 0.22 -1.84 16 22 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 23 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 24 C -0.13 -1.94 10.05 22.27 0.22 -1.72 16 25 C -0.11 -1.96 9.70 22.27 0.22 -1.74 16 26 C -0.10 -2.50 7.73 30.82 0.24 -2.26 16 27 C 0.03 1.01 5.11 83.96 0.43 1.44 16 28 H 0.04 1.41 8.13 -2.39 -0.02 1.39 16 29 H 0.07 2.51 4.61 -2.39 -0.01 2.50 16 30 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.05 2.82 6.42 -2.39 -0.02 2.80 16 33 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 34 H 0.05 1.96 7.83 -2.39 -0.02 1.94 16 35 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.11 1.93 7.87 -2.38 -0.02 1.91 16 39 H 0.07 1.05 8.09 -2.38 -0.02 1.04 16 40 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 41 H 0.13 2.01 8.06 -2.92 -0.02 1.99 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 44 H 0.14 1.42 8.06 -2.91 -0.02 1.39 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 48 H 0.09 2.82 6.79 -2.39 -0.02 2.81 16 49 H 0.06 2.05 7.22 -2.39 -0.02 2.03 16 Total: -1.00 -65.30 387.94 0.57 -64.73 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.90 Total: 19.05 kcal Atomic # 6 Polarization: -44.84 SS G_CDS: 4.47 Total: -40.36 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -5.29 Total: -79.70 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -1.54 Total: -10.58 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -65.30 0.57 -64.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176283.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.326 kcal (2) G-P(sol) polarization free energy of solvation -65.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds