Wall clock time and date at job start Tue Mar 31 2020 11:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46852 * 2 1 4 4 H 1.09005 * 109.47111 * 304.42714 * 3 2 1 5 5 C 1.50695 * 109.46798 * 184.42572 * 3 2 1 6 6 H 1.07998 * 120.00286 * 304.98135 * 5 3 2 7 7 C 1.37881 * 119.99801 * 124.99058 * 5 3 2 8 8 N 1.31519 * 119.99559 * 171.47157 * 7 5 3 9 9 Si 1.86800 * 120.00262 * 351.46421 * 7 5 3 10 10 H 1.48496 * 109.46754 * 91.47996 * 9 7 5 11 11 H 1.48493 * 109.47280 * 211.48020 * 9 7 5 12 12 H 1.48497 * 109.46894 * 331.48259 * 9 7 5 13 13 N 1.46898 * 109.47315 * 64.42273 * 3 2 1 14 14 C 1.48153 * 110.99946 * 169.45954 * 13 3 2 15 15 C 1.52958 * 85.83152 * 223.08147 * 14 13 3 16 16 C 1.52810 * 121.29328 * 148.66054 * 15 14 13 17 17 C 1.53973 * 86.74403 * 150.89181 * 16 15 14 18 18 O 1.42899 * 113.57390 * 220.66022 * 17 16 15 19 19 C 1.42898 * 114.00001 * 208.59070 * 18 17 16 20 20 C 1.50703 * 109.47484 * 180.02562 * 19 18 17 21 21 C 1.38237 * 119.99946 * 269.73323 * 20 19 18 22 22 C 1.38231 * 119.99406 * 179.76315 * 21 20 19 23 23 C 1.38240 * 120.00424 * 0.48258 * 22 21 20 24 24 C 1.38233 * 119.99677 * 359.78982 * 23 22 21 25 25 C 1.38231 * 120.00242 * 359.95537 * 24 23 22 26 26 C 1.53053 * 121.29556 * 257.64779 * 15 14 13 27 27 C 1.48158 * 110.99802 * 69.82795 * 13 3 2 28 28 H 1.09003 * 109.47465 * 60.00335 * 1 2 3 29 29 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47499 * 300.00080 * 1 2 3 31 31 H 1.08997 * 109.47043 * 239.99802 * 2 1 3 32 32 H 1.09002 * 109.46942 * 119.99657 * 2 1 3 33 33 H 0.97007 * 119.99499 * 179.97438 * 8 7 5 34 34 H 1.09007 * 113.81704 * 108.85356 * 14 13 3 35 35 H 1.09000 * 113.93245 * 337.32284 * 14 13 3 36 36 H 1.08999 * 113.66821 * 36.42993 * 16 15 14 37 37 H 1.08997 * 113.66850 * 265.35440 * 16 15 14 38 38 H 1.08996 * 113.57355 * 89.95759 * 17 16 15 39 39 H 1.08999 * 109.47709 * 300.00453 * 19 18 17 40 40 H 1.08999 * 109.46768 * 60.00222 * 19 18 17 41 41 H 1.07997 * 119.99745 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.99756 * 180.25228 * 22 21 20 43 43 H 1.07999 * 120.00070 * 179.76864 * 23 22 21 44 44 H 1.08006 * 119.99807 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00002 * 179.97438 * 25 24 23 46 46 H 1.09003 * 113.74245 * 94.67631 * 26 15 14 47 47 H 1.09001 * 113.67319 * 323.53154 * 26 15 14 48 48 H 1.09005 * 113.81929 * 22.69695 * 27 13 3 49 49 H 1.08998 * 113.81739 * 251.14770 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6132 1.9788 -0.8477 5 6 3.5429 1.4439 -0.1096 6 1 4.1367 0.8887 0.6013 7 6 4.1599 2.1543 -1.1175 8 7 5.4675 2.2950 -1.1173 9 14 3.1386 2.9164 -2.4834 10 1 2.7714 4.3060 -2.1102 11 1 3.9281 2.9338 -3.7410 12 1 1.9046 2.1154 -2.6846 13 7 1.6394 2.1035 1.2492 14 6 2.3216 3.4098 1.4011 15 6 2.5335 3.0035 2.8604 16 6 3.7610 3.4675 3.6433 17 6 2.8800 3.3840 4.9034 18 8 3.0839 4.4646 5.8159 19 6 2.8253 4.1295 7.1807 20 6 3.0702 5.3363 8.0495 21 6 4.3240 5.5573 8.5881 22 6 4.5498 6.6668 9.3810 23 6 3.5193 7.5501 9.6434 24 6 2.2641 7.3261 9.1094 25 6 2.0396 6.2193 8.3123 26 6 1.6632 3.5787 3.9803 27 6 2.3842 1.5510 2.4047 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9017 2.7945 -1.8266 34 1 1.6619 4.2683 1.2746 35 1 3.2457 3.4952 0.8294 36 1 4.0791 4.4808 3.3981 37 1 4.5820 2.7506 3.6351 38 1 2.9065 2.4090 5.3899 39 1 1.7884 3.8105 7.2865 40 1 3.4875 3.3199 7.4877 41 1 5.1279 4.8648 8.3866 42 1 5.5304 6.8417 9.7985 43 1 3.6948 8.4150 10.2660 44 1 1.4589 8.0160 9.3148 45 1 1.0588 6.0441 7.8954 46 1 0.8114 2.9505 4.2408 47 1 1.3906 4.6234 3.8300 48 1 3.3270 1.0756 2.1340 49 1 1.7739 0.9412 3.0709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:05 Heat of formation + Delta-G solvation = 34.710395 kcal Electronic energy + Delta-G solvation = -26117.756978 eV Core-core repulsion = 22625.486987 eV Total energy + Delta-G solvation = -3492.269991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.29171 -39.44327 -37.69623 -35.43518 -32.81341 -32.12106 -31.62096 -31.08777 -27.85215 -26.19885 -25.45654 -25.35672 -24.52355 -22.76398 -22.59969 -21.49359 -21.01957 -18.78378 -17.76849 -17.12250 -16.84193 -16.59867 -15.76393 -15.61158 -15.27472 -14.60334 -14.47912 -14.18130 -14.03458 -13.59819 -13.51187 -13.42086 -12.93878 -12.80616 -12.48616 -12.28891 -12.26025 -12.10233 -11.79553 -11.59229 -11.45789 -11.20450 -11.08948 -10.90967 -10.88476 -10.72261 -10.35813 -10.09794 -9.77229 -9.66599 -9.58269 -9.36471 -9.21332 -9.10492 -9.07144 -8.97098 -8.63926 -7.43031 -6.19897 -4.21009 1.08958 1.21839 3.22630 3.31859 3.34564 3.44235 4.05147 4.32268 4.62674 4.68001 4.80576 4.81369 4.91467 4.98793 5.05611 5.09121 5.15775 5.20871 5.24184 5.34359 5.47224 5.48749 5.53749 5.78141 5.85384 5.86547 6.03403 6.08264 6.14343 6.17552 6.24437 6.25435 6.30343 6.37921 6.42999 6.44304 6.51052 6.55729 6.62053 6.66690 6.72170 6.79295 6.82410 6.87899 7.07900 7.16579 7.33218 7.41906 7.54683 7.63674 8.25253 8.41533 8.84508 9.43977 10.91718 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.002650 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.928794 B =10564.656159 C =11168.520880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.102 4.102 3 C 0.134 3.866 4 H 0.049 0.951 5 C -0.537 4.537 6 H 0.077 0.923 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.870 3.130 10 H -0.274 1.274 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.484 5.484 14 C 0.025 3.975 15 C -0.106 4.106 16 C -0.117 4.117 17 C 0.061 3.939 18 O -0.368 6.368 19 C 0.100 3.900 20 C -0.086 4.086 21 C -0.099 4.099 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.125 4.125 25 C -0.099 4.099 26 C -0.122 4.122 27 C 0.036 3.964 28 H 0.040 0.960 29 H 0.032 0.968 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.265 0.735 34 H 0.060 0.940 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.066 0.934 47 H 0.085 0.915 48 H 0.089 0.911 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.549 5.743 18.737 20.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C 0.027 3.973 4 H 0.067 0.933 5 C -0.576 4.576 6 H 0.095 0.905 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.698 3.302 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.188 1.188 13 N -0.207 5.207 14 C -0.104 4.104 15 C -0.107 4.107 16 C -0.155 4.155 17 C 0.003 3.997 18 O -0.288 6.288 19 C 0.024 3.976 20 C -0.086 4.086 21 C -0.118 4.118 22 C -0.143 4.143 23 C -0.137 4.137 24 C -0.143 4.143 25 C -0.118 4.118 26 C -0.160 4.160 27 C -0.093 4.093 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.140 0.860 45 H 0.141 0.859 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.107 0.893 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.065 5.945 18.527 20.380 hybrid contribution 0.448 0.189 -0.921 1.042 sum -5.617 6.134 17.605 19.471 Atomic orbital electron populations 1.21757 0.97768 0.99185 1.01454 1.21508 0.93510 0.98507 1.00546 1.20249 0.94685 0.91773 0.90608 0.93348 1.21399 0.90385 1.31269 1.14530 0.90484 1.25102 0.94715 0.95153 0.97431 1.69934 1.08750 1.40744 1.33293 0.86951 0.80777 0.80183 0.82327 1.20015 1.21470 1.18808 1.68849 1.45009 1.02908 1.03906 1.23641 0.99817 0.93521 0.93426 1.22609 0.95636 0.98103 0.94330 1.23022 0.97163 1.02371 0.92961 1.23893 0.97716 0.89572 0.88476 1.88042 1.89216 1.36740 1.14777 1.21316 0.99910 0.93936 0.82471 1.19703 0.94074 0.96950 0.97866 1.21107 0.96266 0.97648 0.96735 1.21152 0.99162 0.94907 0.99036 1.21182 0.93304 0.99268 0.99920 1.21147 0.97278 0.97700 0.98176 1.21096 0.99060 0.94070 0.97531 1.23156 0.96483 1.01369 0.94996 1.23467 0.99015 0.93211 0.93577 0.94061 0.94856 0.92335 0.92883 0.93367 0.92544 0.92178 0.88279 0.89446 0.90881 0.89926 0.92629 0.92626 0.85872 0.85982 0.86149 0.86009 0.85909 0.91502 0.89636 0.89262 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.80 37.16 0.36 -2.20 16 2 C -0.10 -2.10 5.38 -26.73 -0.14 -2.25 16 3 C 0.13 3.06 2.01 -68.87 -0.14 2.92 16 4 H 0.05 1.18 4.57 -51.93 -0.24 0.94 16 5 C -0.54 -13.95 6.29 -34.44 -0.22 -14.17 16 6 H 0.08 2.18 6.52 -52.49 -0.34 1.84 16 7 C 0.08 2.18 4.77 -17.82 -0.09 2.09 16 8 N -0.89 -25.79 13.96 55.43 0.77 -25.02 16 9 Si 0.87 21.02 27.22 -169.99 -4.63 16.39 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.26 -6.22 6.45 56.52 0.36 -5.85 16 13 N -0.48 -10.05 5.69 -236.77 -1.35 -11.40 16 14 C 0.02 0.51 7.53 -3.16 -0.02 0.48 16 15 C -0.11 -1.86 1.26 -154.76 -0.19 -2.06 16 16 C -0.12 -1.94 7.69 -26.32 -0.20 -2.15 16 17 C 0.06 0.86 4.29 -25.73 -0.11 0.75 16 18 O -0.37 -5.30 10.34 -35.23 -0.36 -5.67 16 19 C 0.10 1.14 5.91 36.01 0.21 1.35 16 20 C -0.09 -0.97 5.51 -104.62 -0.58 -1.54 16 21 C -0.10 -1.04 9.70 -39.58 -0.38 -1.42 16 22 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.04 10.05 -39.58 -0.40 -1.44 16 24 C -0.13 -1.14 10.05 -39.59 -0.40 -1.54 16 25 C -0.10 -1.03 9.70 -39.58 -0.38 -1.42 16 26 C -0.12 -1.84 7.70 -26.20 -0.20 -2.04 16 27 C 0.04 0.68 6.56 -3.15 -0.02 0.66 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 1.04 7.73 -51.93 -0.40 0.63 16 31 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.97 7.40 -51.93 -0.38 0.58 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 2.38 5.87 -51.93 -0.31 2.07 16 36 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.06 7.88 -51.93 -0.41 0.65 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.06 0.56 8.08 -51.93 -0.42 0.15 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 42 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 45 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 48 H 0.09 1.90 5.64 -51.93 -0.29 1.61 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -28.66 385.78 -11.35 -40.01 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -8.30 Total: 5.38 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: -3.30 Total: -25.51 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: -0.57 Total: -36.42 kcal Atomic # 8 Polarization: -5.30 SS G_CDS: -0.36 Total: -5.67 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -4.63 Total: 16.39 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -28.66 -11.35 -40.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.721 kcal (2) G-P(sol) polarization free energy of solvation -28.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds