Wall clock time and date at job start Tue Mar 31 2020 11:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46852 * 2 1 4 4 H 1.09005 * 109.47111 * 304.42714 * 3 2 1 5 5 C 1.50695 * 109.46798 * 184.42572 * 3 2 1 6 6 H 1.07998 * 120.00286 * 304.98135 * 5 3 2 7 7 C 1.37881 * 119.99801 * 124.99058 * 5 3 2 8 8 N 1.31519 * 119.99559 * 171.47157 * 7 5 3 9 9 Si 1.86800 * 120.00262 * 351.46421 * 7 5 3 10 10 H 1.48496 * 109.46754 * 91.47996 * 9 7 5 11 11 H 1.48493 * 109.47280 * 211.48020 * 9 7 5 12 12 H 1.48497 * 109.46894 * 331.48259 * 9 7 5 13 13 N 1.46898 * 109.47315 * 64.42273 * 3 2 1 14 14 C 1.48153 * 110.99946 * 169.45954 * 13 3 2 15 15 C 1.52958 * 85.83152 * 223.08147 * 14 13 3 16 16 C 1.52810 * 121.29328 * 148.66054 * 15 14 13 17 17 C 1.53973 * 86.74403 * 150.89181 * 16 15 14 18 18 O 1.42899 * 113.57390 * 220.66022 * 17 16 15 19 19 C 1.42898 * 114.00001 * 208.59070 * 18 17 16 20 20 C 1.50703 * 109.47484 * 180.02562 * 19 18 17 21 21 C 1.38237 * 119.99946 * 269.73323 * 20 19 18 22 22 C 1.38231 * 119.99406 * 179.76315 * 21 20 19 23 23 C 1.38240 * 120.00424 * 0.48258 * 22 21 20 24 24 C 1.38233 * 119.99677 * 359.78982 * 23 22 21 25 25 C 1.38231 * 120.00242 * 359.95537 * 24 23 22 26 26 C 1.53053 * 121.29556 * 257.64779 * 15 14 13 27 27 C 1.48158 * 110.99802 * 69.82795 * 13 3 2 28 28 H 1.09003 * 109.47465 * 60.00335 * 1 2 3 29 29 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47499 * 300.00080 * 1 2 3 31 31 H 1.08997 * 109.47043 * 239.99802 * 2 1 3 32 32 H 1.09002 * 109.46942 * 119.99657 * 2 1 3 33 33 H 0.97007 * 119.99499 * 179.97438 * 8 7 5 34 34 H 1.09007 * 113.81704 * 108.85356 * 14 13 3 35 35 H 1.09000 * 113.93245 * 337.32284 * 14 13 3 36 36 H 1.08999 * 113.66821 * 36.42993 * 16 15 14 37 37 H 1.08997 * 113.66850 * 265.35440 * 16 15 14 38 38 H 1.08996 * 113.57355 * 89.95759 * 17 16 15 39 39 H 1.08999 * 109.47709 * 300.00453 * 19 18 17 40 40 H 1.08999 * 109.46768 * 60.00222 * 19 18 17 41 41 H 1.07997 * 119.99745 * 359.97438 * 21 20 19 42 42 H 1.08002 * 119.99756 * 180.25228 * 22 21 20 43 43 H 1.07999 * 120.00070 * 179.76864 * 23 22 21 44 44 H 1.08006 * 119.99807 * 179.97438 * 24 23 22 45 45 H 1.08001 * 120.00002 * 179.97438 * 25 24 23 46 46 H 1.09003 * 113.74245 * 94.67631 * 26 15 14 47 47 H 1.09001 * 113.67319 * 323.53154 * 26 15 14 48 48 H 1.09005 * 113.81929 * 22.69695 * 27 13 3 49 49 H 1.08998 * 113.81739 * 251.14770 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6132 1.9788 -0.8477 5 6 3.5429 1.4439 -0.1096 6 1 4.1367 0.8887 0.6013 7 6 4.1599 2.1543 -1.1175 8 7 5.4675 2.2950 -1.1173 9 14 3.1386 2.9164 -2.4834 10 1 2.7714 4.3060 -2.1102 11 1 3.9281 2.9338 -3.7410 12 1 1.9046 2.1154 -2.6846 13 7 1.6394 2.1035 1.2492 14 6 2.3216 3.4098 1.4011 15 6 2.5335 3.0035 2.8604 16 6 3.7610 3.4675 3.6433 17 6 2.8800 3.3840 4.9034 18 8 3.0839 4.4646 5.8159 19 6 2.8253 4.1295 7.1807 20 6 3.0702 5.3363 8.0495 21 6 4.3240 5.5573 8.5881 22 6 4.5498 6.6668 9.3810 23 6 3.5193 7.5501 9.6434 24 6 2.2641 7.3261 9.1094 25 6 2.0396 6.2193 8.3123 26 6 1.6632 3.5787 3.9803 27 6 2.3842 1.5510 2.4047 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 5.9017 2.7945 -1.8266 34 1 1.6619 4.2683 1.2746 35 1 3.2457 3.4952 0.8294 36 1 4.0791 4.4808 3.3981 37 1 4.5820 2.7506 3.6351 38 1 2.9065 2.4090 5.3899 39 1 1.7884 3.8105 7.2865 40 1 3.4875 3.3199 7.4877 41 1 5.1279 4.8648 8.3866 42 1 5.5304 6.8417 9.7985 43 1 3.6948 8.4150 10.2660 44 1 1.4589 8.0160 9.3148 45 1 1.0588 6.0441 7.8954 46 1 0.8114 2.9505 4.2408 47 1 1.3906 4.6234 3.8300 48 1 3.3270 1.0756 2.1340 49 1 1.7739 0.9412 3.0709 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176284.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:04 Heat of formation + Delta-G solvation = 19.011433 kcal Electronic energy + Delta-G solvation = -26118.437736 eV Core-core repulsion = 22625.486987 eV Total energy + Delta-G solvation = -3492.950749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75770 -40.22625 -38.93428 -36.80855 -34.49691 -33.90202 -32.51562 -31.78179 -29.59903 -27.14675 -26.98887 -26.76787 -26.15483 -24.19607 -23.46543 -22.40556 -22.21258 -20.54273 -19.47335 -18.61729 -17.98525 -17.59114 -17.01333 -16.61006 -16.42336 -16.22516 -15.86045 -15.52580 -15.16922 -14.85794 -14.78725 -14.63784 -14.25148 -13.99735 -13.93068 -13.75325 -13.52933 -13.46532 -13.25728 -12.98759 -12.79987 -12.63377 -12.43106 -12.24165 -11.96126 -11.87069 -11.80705 -11.74451 -11.58964 -11.24627 -11.13979 -11.03638 -10.75205 -10.70945 -10.32623 -9.81601 -9.74366 -9.21503 -8.32492 -6.34963 0.35427 0.50653 1.28219 1.31926 1.40261 2.29202 2.61625 3.00017 3.13708 3.37287 3.57080 3.71275 3.82229 3.94857 3.99772 4.04947 4.16499 4.19455 4.26706 4.31076 4.38649 4.48488 4.49513 4.55034 4.66938 4.71798 4.78291 4.83318 4.85721 4.90940 4.94470 4.97030 5.04532 5.07852 5.08962 5.16579 5.21214 5.24741 5.26305 5.29656 5.46181 5.51799 5.55930 5.61417 5.63354 5.68103 5.69009 5.86472 6.10778 6.29169 6.36328 6.48983 6.73964 7.32307 8.82609 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.002650 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.928794 B =10564.656159 C =11168.520880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.102 4.102 3 C 0.135 3.865 4 H 0.038 0.962 5 C -0.523 4.523 6 H 0.043 0.957 7 C 0.030 3.970 8 N -0.937 5.937 9 Si 0.923 3.077 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.475 5.475 14 C 0.015 3.985 15 C -0.101 4.101 16 C -0.125 4.125 17 C 0.079 3.921 18 O -0.386 6.386 19 C 0.097 3.903 20 C -0.107 4.107 21 C -0.117 4.117 22 C -0.132 4.132 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.113 4.113 26 C -0.109 4.109 27 C 0.040 3.960 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.043 0.957 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.127 0.873 42 H 0.141 0.859 43 H 0.145 0.855 44 H 0.143 0.857 45 H 0.131 0.869 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.059 0.941 49 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.967 6.168 20.437 22.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.140 4.140 3 C 0.028 3.972 4 H 0.056 0.944 5 C -0.563 4.563 6 H 0.061 0.939 7 C -0.169 4.169 8 N -0.576 5.576 9 Si 0.748 3.252 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.174 1.174 13 N -0.197 5.197 14 C -0.114 4.114 15 C -0.101 4.101 16 C -0.164 4.164 17 C 0.021 3.979 18 O -0.306 6.306 19 C 0.021 3.979 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.150 4.150 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.131 4.131 26 C -0.146 4.146 27 C -0.088 4.088 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.145 0.855 42 H 0.159 0.841 43 H 0.163 0.837 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.103 0.897 47 H 0.104 0.896 48 H 0.077 0.923 49 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.503 6.362 20.242 22.858 hybrid contribution 1.264 0.076 -1.331 1.837 sum -7.238 6.438 18.911 21.248 Atomic orbital electron populations 1.21649 0.94985 1.00971 1.01548 1.21444 0.95922 0.96452 1.00207 1.20202 0.92239 0.93492 0.91312 0.94363 1.21550 0.92136 1.29526 1.13044 0.93865 1.25769 0.95440 0.96012 0.99701 1.70059 1.10490 1.42703 1.34396 0.86099 0.79773 0.79670 0.79642 1.19598 1.21454 1.17448 1.68807 1.44705 1.02842 1.03372 1.23560 0.98312 0.93994 0.95491 1.22550 0.97505 0.96735 0.93341 1.23018 0.96952 1.01338 0.95051 1.23677 0.95762 0.90553 0.87874 1.88013 1.89372 1.36940 1.16293 1.21486 1.01001 0.94534 0.80830 1.19839 0.94769 0.97518 0.98631 1.21312 0.96327 0.98457 0.97367 1.21462 1.00356 0.94531 0.98672 1.21549 0.92992 0.99785 0.99678 1.21476 0.98202 0.97633 0.97604 1.21316 0.99318 0.94474 0.98042 1.23078 0.96899 1.01421 0.93221 1.23381 0.97866 0.94301 0.93289 0.94101 0.92266 0.92054 0.93825 0.93248 0.92673 0.91124 0.92166 0.90588 0.92008 0.87899 0.91226 0.91635 0.85529 0.84098 0.83721 0.83896 0.85148 0.89665 0.89631 0.92272 0.89392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.39 9.80 71.98 0.71 -3.68 16 2 C -0.10 -4.07 5.38 30.59 0.16 -3.90 16 3 C 0.14 6.15 2.01 44.17 0.09 6.24 16 4 H 0.04 1.83 4.57 -2.38 -0.01 1.82 16 5 C -0.52 -28.10 6.29 25.60 0.16 -27.94 16 6 H 0.04 2.58 6.52 -2.91 -0.02 2.56 16 7 C 0.03 1.69 4.77 84.65 0.40 2.10 16 8 N -0.94 -56.61 13.96 21.45 0.30 -56.31 16 9 Si 0.92 43.93 27.22 68.60 1.87 45.80 16 10 H -0.27 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.25 -11.30 6.45 99.48 0.64 -10.66 16 13 N -0.48 -19.34 5.69 -903.00 -5.14 -24.48 16 14 C 0.02 0.64 7.53 86.05 0.65 1.29 16 15 C -0.10 -3.48 1.26 -52.22 -0.07 -3.54 16 16 C -0.13 -4.20 7.69 30.86 0.24 -3.96 16 17 C 0.08 2.11 4.29 31.24 0.13 2.24 16 18 O -0.39 -10.58 10.34 -148.98 -1.54 -12.12 16 19 C 0.10 2.05 5.91 71.24 0.42 2.47 16 20 C -0.11 -2.29 5.51 -19.86 -0.11 -2.40 16 21 C -0.12 -2.33 9.70 22.27 0.22 -2.11 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.01 16 23 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 24 C -0.13 -2.14 10.05 22.27 0.22 -1.92 16 25 C -0.11 -2.18 9.70 22.27 0.22 -1.97 16 26 C -0.11 -3.01 7.70 30.94 0.24 -2.77 16 27 C 0.04 1.50 6.56 86.05 0.56 2.07 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 1.97 7.73 -2.39 -0.02 1.95 16 31 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.05 1.93 7.40 -2.39 -0.02 1.91 16 33 H 0.26 15.15 8.31 -92.70 -0.77 14.37 16 34 H 0.07 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.06 3.01 5.87 -2.39 -0.01 2.99 16 36 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 37 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 38 H 0.10 2.36 7.88 -2.39 -0.02 2.34 16 39 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 40 H 0.07 1.22 8.08 -2.39 -0.02 1.20 16 41 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 42 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 43 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 44 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 45 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 46 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.09 2.41 8.14 -2.39 -0.02 2.40 16 48 H 0.06 2.60 5.64 -2.38 -0.01 2.59 16 49 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -63.46 385.78 1.02 -62.44 By element: Atomic # 1 Polarization: 25.28 SS G_CDS: 0.84 Total: 26.12 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 4.69 Total: -41.45 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -4.84 Total: -80.79 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.54 Total: -12.12 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.87 Total: 45.80 kcal Total: -63.46 1.02 -62.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176284.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.452 kcal (2) G-P(sol) polarization free energy of solvation -63.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.440 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds