Wall clock time and date at job start Tue Mar 31 2020 11:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47011 * 2 1 4 4 H 1.08999 * 109.47443 * 178.77885 * 3 2 1 5 5 C 1.50702 * 109.47337 * 298.78244 * 3 2 1 6 6 H 1.07999 * 120.00762 * 115.59389 * 5 3 2 7 7 C 1.37884 * 119.99718 * 295.59828 * 5 3 2 8 8 N 1.31519 * 119.99957 * 354.11630 * 7 5 3 9 9 Si 1.86797 * 119.99886 * 174.11493 * 7 5 3 10 10 H 1.48501 * 109.47114 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47123 * 60.00198 * 9 7 5 12 12 H 1.48494 * 109.47452 * 299.99932 * 9 7 5 13 13 N 1.46905 * 109.47626 * 58.77939 * 3 2 1 14 14 C 1.46861 * 110.99747 * 55.00602 * 13 3 2 15 15 C 1.53126 * 109.47236 * 186.19304 * 14 13 3 16 16 C 1.52779 * 109.28135 * 301.37893 * 15 14 13 17 17 C 1.52803 * 109.98762 * 56.84185 * 16 15 14 18 18 C 1.46878 * 111.00217 * 179.29847 * 13 3 2 19 19 O 1.43594 * 109.95116 * 295.66251 * 16 15 14 20 20 C 1.44000 * 104.86471 * 212.37978 * 19 16 15 21 21 H 1.09006 * 110.14876 * 268.91326 * 20 19 16 22 22 C 1.52997 * 110.15338 * 147.23837 * 20 19 16 23 23 C 1.51117 * 105.97745 * 28.10737 * 20 19 16 24 24 C 1.37948 * 132.67677 * 162.47890 * 23 20 19 25 25 C 1.38285 * 119.94820 * 180.02562 * 24 23 20 26 26 C 1.38260 * 120.02635 * 0.02562 * 25 24 23 27 27 C 1.38288 * 120.05485 * 359.97438 * 26 25 24 28 28 C 1.37974 * 119.94545 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47155 * 305.06129 * 1 2 3 30 30 H 1.09000 * 109.46975 * 65.06382 * 1 2 3 31 31 H 1.08998 * 109.46848 * 185.05819 * 1 2 3 32 32 H 1.09000 * 109.47210 * 239.99728 * 2 1 3 33 33 H 1.08996 * 109.46693 * 119.99688 * 2 1 3 34 34 H 0.96999 * 119.99636 * 355.02071 * 8 7 5 35 35 H 1.09001 * 109.46893 * 306.19802 * 14 13 3 36 36 H 1.09000 * 109.46925 * 66.19161 * 14 13 3 37 37 H 1.09001 * 109.50313 * 181.43725 * 15 14 13 38 38 H 1.08998 * 109.50354 * 61.32320 * 15 14 13 39 39 H 1.09000 * 109.50290 * 183.18959 * 17 16 15 40 40 H 1.08993 * 109.50648 * 63.07057 * 17 16 15 41 41 H 1.08997 * 109.47425 * 293.77890 * 18 13 3 42 42 H 1.08995 * 109.47562 * 53.79007 * 18 13 3 43 43 H 1.09002 * 109.47147 * 61.44859 * 22 20 19 44 44 H 1.08993 * 109.47148 * 181.44976 * 22 20 19 45 45 H 1.08995 * 109.46797 * 301.45546 * 22 20 19 46 46 H 1.07999 * 120.02486 * 359.97438 * 24 23 20 47 47 H 1.07999 * 119.98643 * 180.02562 * 25 24 23 48 48 H 1.08003 * 119.97471 * 179.97438 * 26 25 24 49 49 H 1.07994 * 120.02367 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4426 0.0219 5 6 1.5625 2.1441 -1.2453 6 1 0.8825 2.9795 -1.1674 7 6 1.9938 1.7195 -2.4842 8 7 2.9092 0.7796 -2.5752 9 14 1.2777 2.4791 -4.0332 10 1 1.9039 1.8542 -5.2260 11 1 1.5493 3.9390 -4.0398 12 1 -0.1889 2.2483 -4.0655 13 7 1.5264 2.1435 1.1844 14 6 1.8729 1.4209 2.4151 15 6 1.1930 2.0938 3.6108 16 6 1.6459 3.5505 3.6945 17 6 1.3341 4.2707 2.3834 18 6 2.0102 3.5297 1.2266 19 8 3.0553 3.6108 3.9626 20 6 3.2305 4.8019 4.7527 21 1 3.4344 5.6551 4.1056 22 6 4.3765 4.6104 5.7481 23 6 1.9281 5.0064 5.4913 24 6 1.5880 5.7585 6.5966 25 6 0.2857 5.7527 7.0614 26 6 -0.6748 4.9932 6.4192 27 6 -0.3345 4.2390 5.3112 28 6 0.9647 4.2444 4.8469 29 1 -0.3633 0.5903 0.8412 30 1 -0.3633 0.4333 -0.9319 31 1 -0.3633 -1.0237 0.0906 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3331 0.4363 -1.7732 35 1 1.5331 0.3880 2.3378 36 1 2.9538 1.4383 2.5546 37 1 1.4702 1.5733 4.5274 38 1 0.1112 2.0559 3.4831 39 1 1.7110 5.2923 2.4308 40 1 0.2560 4.2869 2.2245 41 1 3.0901 3.5334 1.3744 42 1 1.7704 4.0271 0.2868 43 1 5.3035 4.4286 5.2043 44 1 4.4826 5.5080 6.3571 45 1 4.1599 3.7579 6.3918 46 1 2.3385 6.3507 7.0989 47 1 0.0186 6.3416 7.9264 48 1 -1.6916 4.9890 6.7832 49 1 -1.0852 3.6464 4.8097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255176401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:18 Heat of formation + Delta-G solvation = -13.304812 kcal Electronic energy + Delta-G solvation = -27832.557947 eV Core-core repulsion = 24338.205860 eV Total energy + Delta-G solvation = -3494.352087 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.30672 -38.32654 -37.15915 -34.68583 -32.55940 -31.65975 -31.21947 -30.35068 -29.96729 -28.97255 -25.88600 -24.16909 -23.89477 -23.29537 -22.29290 -21.31881 -21.19586 -19.44101 -18.76837 -16.97315 -16.68444 -16.19068 -15.75554 -15.48610 -15.06278 -14.37547 -14.16276 -13.84887 -13.81578 -13.68142 -13.48953 -13.39270 -13.03140 -12.76502 -12.55119 -12.34996 -12.11968 -11.96069 -11.80823 -11.51944 -11.47913 -11.27375 -11.03167 -10.89906 -10.75811 -10.72311 -10.52364 -10.37525 -10.06284 -9.99090 -9.71989 -9.69900 -9.47269 -9.02613 -8.63259 -8.37811 -8.30262 -7.15327 -6.26699 -3.97122 1.11240 1.20380 3.46939 3.48780 3.54673 3.67108 3.82788 4.12765 4.50320 4.55942 4.74421 4.83968 4.90851 5.02526 5.08394 5.13903 5.17037 5.24997 5.38400 5.43033 5.48500 5.64369 5.66810 5.73512 5.78762 5.89640 5.90268 6.01430 6.04534 6.11420 6.14926 6.23801 6.26181 6.29897 6.40133 6.43371 6.44007 6.51076 6.55835 6.70656 6.76378 6.77561 6.95657 7.00323 7.15425 7.25736 7.44316 7.53971 7.99160 8.12178 8.45618 8.66442 8.94676 9.71730 11.08761 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.003608 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.412293 B = 7759.301288 C = 7897.675519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.117 4.117 3 C 0.206 3.794 4 H -0.013 1.013 5 C -0.574 4.574 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 1.063 2.937 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.288 1.288 13 N -0.522 5.522 14 C 0.052 3.948 15 C -0.099 4.099 16 C 0.150 3.850 17 C -0.118 4.118 18 C 0.072 3.928 19 O -0.340 6.340 20 C 0.113 3.887 21 H 0.081 0.919 22 C -0.145 4.145 23 C -0.126 4.126 24 C -0.096 4.096 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.091 4.091 28 C -0.105 4.105 29 H 0.050 0.950 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.065 0.935 33 H 0.022 0.978 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.025 0.975 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.611 8.630 19.105 21.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.155 4.155 3 C 0.100 3.900 4 H 0.005 0.995 5 C -0.613 4.613 6 H 0.073 0.927 7 C -0.184 4.184 8 N -0.552 5.552 9 Si 0.892 3.108 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.215 1.215 13 N -0.247 5.247 14 C -0.077 4.077 15 C -0.136 4.136 16 C 0.110 3.890 17 C -0.156 4.156 18 C -0.057 4.057 19 O -0.260 6.260 20 C 0.056 3.944 21 H 0.098 0.902 22 C -0.202 4.202 23 C -0.126 4.126 24 C -0.114 4.114 25 C -0.139 4.139 26 C -0.135 4.135 27 C -0.109 4.109 28 C -0.106 4.106 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.096 0.904 41 H 0.043 0.957 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.914 8.386 17.320 19.637 hybrid contribution 0.726 0.280 1.878 2.033 sum -3.188 8.666 19.198 21.303 Atomic orbital electron populations 1.21436 0.96338 0.97561 1.02389 1.21657 0.96414 0.98363 0.99060 1.19334 0.92051 0.90726 0.87909 0.99503 1.21816 1.30400 1.17999 0.91094 0.92654 1.25673 0.95676 0.95737 1.01297 1.70782 1.24514 1.26839 1.33034 0.83626 0.75831 0.75475 0.75850 1.21000 1.21662 1.21462 1.61965 1.59821 1.01220 1.01660 1.22056 0.97272 0.98176 0.90164 1.21617 1.01037 0.92374 0.98609 1.20585 0.80349 0.96328 0.91699 1.21951 1.02066 0.98096 0.93492 1.21827 0.95972 0.90375 0.97479 1.89152 1.22963 1.42732 1.71113 1.21324 0.92128 0.89431 0.91534 0.90186 1.21824 0.97602 1.02382 0.98409 1.21109 0.96600 0.98293 0.96592 1.20351 0.96518 0.99090 0.95405 1.21083 0.92897 0.99760 1.00200 1.21122 0.99531 0.97010 0.95851 1.20468 0.94835 0.99201 0.96360 1.21008 0.94460 0.98348 0.96735 0.93045 0.92296 0.96373 0.91601 0.95915 0.91924 0.90688 0.95523 0.91792 0.90213 0.92249 0.90421 0.95724 0.89484 0.91465 0.91366 0.91854 0.86079 0.85754 0.85642 0.85636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.59 9.43 37.16 0.35 -2.23 16 2 C -0.12 -2.73 4.85 -26.73 -0.13 -2.86 16 3 C 0.21 5.12 1.40 -68.86 -0.10 5.02 16 4 H -0.01 -0.35 7.55 -51.93 -0.39 -0.74 16 5 C -0.57 -15.51 6.57 -34.44 -0.23 -15.74 16 6 H 0.06 1.51 6.95 -52.49 -0.36 1.15 16 7 C 0.02 0.56 5.24 -17.82 -0.09 0.46 16 8 N -0.91 -27.07 12.83 55.43 0.71 -26.36 16 9 Si 1.06 25.01 29.91 -169.99 -5.08 19.93 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 N -0.52 -11.08 3.62 -227.94 -0.82 -11.90 16 14 C 0.05 0.98 4.89 -3.78 -0.02 0.96 16 15 C -0.10 -1.56 5.04 -26.78 -0.14 -1.69 16 16 C 0.15 2.32 0.68 -91.95 -0.06 2.25 16 17 C -0.12 -1.95 5.07 -26.78 -0.14 -2.09 16 18 C 0.07 1.45 5.16 -3.78 -0.02 1.43 16 19 O -0.34 -5.55 9.83 -35.23 -0.35 -5.90 16 20 C 0.11 1.48 3.77 -27.68 -0.10 1.37 16 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 22 C -0.14 -1.53 9.51 37.16 0.35 -1.17 16 23 C -0.13 -1.57 5.73 -104.35 -0.60 -2.17 16 24 C -0.10 -0.98 9.88 -39.67 -0.39 -1.37 16 25 C -0.12 -1.13 10.05 -39.56 -0.40 -1.53 16 26 C -0.12 -1.15 10.05 -39.55 -0.40 -1.55 16 27 C -0.09 -1.06 9.87 -39.66 -0.39 -1.46 16 28 C -0.11 -1.42 5.03 -104.51 -0.53 -1.95 16 29 H 0.05 1.06 7.30 -51.93 -0.38 0.68 16 30 H 0.06 1.38 7.44 -51.93 -0.39 1.00 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 1.70 6.19 -51.93 -0.32 1.38 16 33 H 0.02 0.48 6.27 -51.93 -0.33 0.16 16 34 H 0.27 8.00 6.07 -40.82 -0.25 7.75 16 35 H 0.07 1.40 5.85 -51.93 -0.30 1.10 16 36 H 0.03 0.54 7.85 -51.93 -0.41 0.13 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 39 H 0.06 0.92 7.99 -51.93 -0.42 0.50 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 41 H 0.02 0.53 7.85 -51.93 -0.41 0.12 16 42 H 0.09 1.91 6.42 -51.93 -0.33 1.58 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 49 H 0.13 1.34 8.03 -52.49 -0.42 0.92 16 LS Contribution 370.73 15.07 5.59 5.59 Total: -1.00 -29.94 370.73 -11.13 -41.06 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.15 Total: 1.90 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.02 Total: -24.31 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: -0.11 Total: -38.27 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -0.35 Total: -5.90 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.08 Total: 19.93 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.94 -11.13 -41.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.758 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds