Wall clock time and date at job start Tue Mar 31 2020 11:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52993 * 109.47011 * 2 1 4 4 H 1.08999 * 109.47443 * 178.77885 * 3 2 1 5 5 C 1.50702 * 109.47337 * 298.78244 * 3 2 1 6 6 H 1.07999 * 120.00762 * 115.59389 * 5 3 2 7 7 C 1.37884 * 119.99718 * 295.59828 * 5 3 2 8 8 N 1.31519 * 119.99957 * 354.11630 * 7 5 3 9 9 Si 1.86797 * 119.99886 * 174.11493 * 7 5 3 10 10 H 1.48501 * 109.47114 * 179.97438 * 9 7 5 11 11 H 1.48499 * 109.47123 * 60.00198 * 9 7 5 12 12 H 1.48494 * 109.47452 * 299.99932 * 9 7 5 13 13 N 1.46905 * 109.47626 * 58.77939 * 3 2 1 14 14 C 1.46861 * 110.99747 * 55.00602 * 13 3 2 15 15 C 1.53126 * 109.47236 * 186.19304 * 14 13 3 16 16 C 1.52779 * 109.28135 * 301.37893 * 15 14 13 17 17 C 1.52803 * 109.98762 * 56.84185 * 16 15 14 18 18 C 1.46878 * 111.00217 * 179.29847 * 13 3 2 19 19 O 1.43594 * 109.95116 * 295.66251 * 16 15 14 20 20 C 1.44000 * 104.86471 * 212.37978 * 19 16 15 21 21 H 1.09006 * 110.14876 * 268.91326 * 20 19 16 22 22 C 1.52997 * 110.15338 * 147.23837 * 20 19 16 23 23 C 1.51117 * 105.97745 * 28.10737 * 20 19 16 24 24 C 1.37948 * 132.67677 * 162.47890 * 23 20 19 25 25 C 1.38285 * 119.94820 * 180.02562 * 24 23 20 26 26 C 1.38260 * 120.02635 * 0.02562 * 25 24 23 27 27 C 1.38288 * 120.05485 * 359.97438 * 26 25 24 28 28 C 1.37974 * 119.94545 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.47155 * 305.06129 * 1 2 3 30 30 H 1.09000 * 109.46975 * 65.06382 * 1 2 3 31 31 H 1.08998 * 109.46848 * 185.05819 * 1 2 3 32 32 H 1.09000 * 109.47210 * 239.99728 * 2 1 3 33 33 H 1.08996 * 109.46693 * 119.99688 * 2 1 3 34 34 H 0.96999 * 119.99636 * 355.02071 * 8 7 5 35 35 H 1.09001 * 109.46893 * 306.19802 * 14 13 3 36 36 H 1.09000 * 109.46925 * 66.19161 * 14 13 3 37 37 H 1.09001 * 109.50313 * 181.43725 * 15 14 13 38 38 H 1.08998 * 109.50354 * 61.32320 * 15 14 13 39 39 H 1.09000 * 109.50290 * 183.18959 * 17 16 15 40 40 H 1.08993 * 109.50648 * 63.07057 * 17 16 15 41 41 H 1.08997 * 109.47425 * 293.77890 * 18 13 3 42 42 H 1.08995 * 109.47562 * 53.79007 * 18 13 3 43 43 H 1.09002 * 109.47147 * 61.44859 * 22 20 19 44 44 H 1.08993 * 109.47148 * 181.44976 * 22 20 19 45 45 H 1.08995 * 109.46797 * 301.45546 * 22 20 19 46 46 H 1.07999 * 120.02486 * 359.97438 * 24 23 20 47 47 H 1.07999 * 119.98643 * 180.02562 * 25 24 23 48 48 H 1.08003 * 119.97471 * 179.97438 * 26 25 24 49 49 H 1.07994 * 120.02367 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1298 1.4426 0.0219 5 6 1.5625 2.1441 -1.2453 6 1 0.8825 2.9795 -1.1674 7 6 1.9938 1.7195 -2.4842 8 7 2.9092 0.7796 -2.5752 9 14 1.2777 2.4791 -4.0332 10 1 1.9039 1.8542 -5.2260 11 1 1.5493 3.9390 -4.0398 12 1 -0.1889 2.2483 -4.0655 13 7 1.5264 2.1435 1.1844 14 6 1.8729 1.4209 2.4151 15 6 1.1930 2.0938 3.6108 16 6 1.6459 3.5505 3.6945 17 6 1.3341 4.2707 2.3834 18 6 2.0102 3.5297 1.2266 19 8 3.0553 3.6108 3.9626 20 6 3.2305 4.8019 4.7527 21 1 3.4344 5.6551 4.1056 22 6 4.3765 4.6104 5.7481 23 6 1.9281 5.0064 5.4913 24 6 1.5880 5.7585 6.5966 25 6 0.2857 5.7527 7.0614 26 6 -0.6748 4.9932 6.4192 27 6 -0.3345 4.2390 5.3112 28 6 0.9647 4.2444 4.8469 29 1 -0.3633 0.5903 0.8412 30 1 -0.3633 0.4333 -0.9319 31 1 -0.3633 -1.0237 0.0906 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3331 0.4363 -1.7732 35 1 1.5331 0.3880 2.3378 36 1 2.9538 1.4383 2.5546 37 1 1.4702 1.5733 4.5274 38 1 0.1112 2.0559 3.4831 39 1 1.7110 5.2923 2.4308 40 1 0.2560 4.2869 2.2245 41 1 3.0901 3.5334 1.3744 42 1 1.7704 4.0271 0.2868 43 1 5.3035 4.4286 5.2043 44 1 4.4826 5.5080 6.3571 45 1 4.1599 3.7579 6.3918 46 1 2.3385 6.3507 7.0989 47 1 0.0186 6.3416 7.9264 48 1 -1.6916 4.9890 6.7832 49 1 -1.0852 3.6464 4.8097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255176401.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:18 Heat of formation + Delta-G solvation = -28.946261 kcal Electronic energy + Delta-G solvation = -27833.236211 eV Core-core repulsion = 24338.205860 eV Total energy + Delta-G solvation = -3495.030351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36417 -39.76220 -38.32680 -36.31006 -34.06824 -33.06496 -32.54243 -31.80367 -30.99260 -30.17036 -27.74202 -25.82859 -24.96329 -24.70021 -23.82716 -22.49449 -22.20244 -21.17062 -20.16505 -18.75773 -17.96138 -17.26795 -16.98772 -16.54772 -16.24726 -15.88969 -15.71279 -15.51918 -15.36105 -14.99109 -14.83840 -14.59221 -14.27820 -13.97372 -13.73849 -13.57039 -13.49791 -13.16900 -13.06905 -13.00459 -12.82240 -12.67945 -12.59667 -12.48907 -12.20036 -12.13540 -12.00734 -11.94449 -11.80485 -11.65978 -11.58710 -11.04612 -10.87847 -10.48440 -10.39042 -9.82755 -9.53385 -9.01666 -8.51847 -6.22390 0.29008 0.40973 1.54275 1.61593 1.80356 2.59312 2.74192 2.76320 3.19180 3.20691 3.28155 3.50706 3.74982 3.82588 3.99845 4.14796 4.18924 4.22499 4.25311 4.32584 4.34986 4.43283 4.47610 4.50908 4.56648 4.61070 4.66511 4.68392 4.74976 4.82530 4.86293 4.89234 4.93949 5.02601 5.04936 5.10228 5.10631 5.15136 5.16956 5.28065 5.36149 5.47370 5.50151 5.52102 5.56028 5.70339 5.88899 5.98845 6.02914 6.11312 6.47663 6.54776 6.77996 7.54642 8.83315 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.003608 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.412293 B = 7759.301288 C = 7897.675519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.111 4.111 3 C 0.209 3.791 4 H -0.058 1.058 5 C -0.574 4.574 6 H 0.050 0.950 7 C -0.028 4.028 8 N -0.939 5.939 9 Si 1.108 2.892 10 H -0.288 1.288 11 H -0.275 1.275 12 H -0.270 1.270 13 N -0.516 5.516 14 C 0.055 3.945 15 C -0.091 4.091 16 C 0.151 3.849 17 C -0.106 4.106 18 C 0.076 3.924 19 O -0.370 6.370 20 C 0.104 3.896 21 H 0.077 0.923 22 C -0.139 4.139 23 C -0.137 4.137 24 C -0.097 4.097 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.100 4.100 28 C -0.128 4.128 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.037 0.963 33 H 0.039 0.961 34 H 0.255 0.745 35 H 0.078 0.922 36 H 0.004 0.996 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.001 0.999 42 H 0.063 0.937 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.145 0.855 47 H 0.157 0.843 48 H 0.153 0.847 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.847 10.198 21.781 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.149 4.149 3 C 0.102 3.898 4 H -0.041 1.041 5 C -0.612 4.612 6 H 0.068 0.932 7 C -0.226 4.226 8 N -0.578 5.578 9 Si 0.931 3.069 10 H -0.214 1.214 11 H -0.200 1.200 12 H -0.196 1.196 13 N -0.241 5.241 14 C -0.073 4.073 15 C -0.128 4.128 16 C 0.112 3.888 17 C -0.144 4.144 18 C -0.052 4.052 19 O -0.290 6.290 20 C 0.047 3.953 21 H 0.095 0.905 22 C -0.196 4.196 23 C -0.137 4.137 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.118 4.118 28 C -0.128 4.128 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.023 0.977 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.019 0.981 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.163 0.837 47 H 0.175 0.825 48 H 0.171 0.829 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.159 9.966 20.030 23.205 hybrid contribution 1.463 -0.161 1.149 1.867 sum -4.696 9.805 21.180 23.807 Atomic orbital electron populations 1.21310 0.94359 0.99315 1.01521 1.21536 0.97988 0.96945 0.98436 1.19190 0.89413 0.92143 0.89068 1.04056 1.22021 1.29546 1.17611 0.92064 0.93191 1.27013 0.95395 0.95554 1.04659 1.70899 1.26061 1.28527 1.32273 0.83044 0.76078 0.75472 0.72316 1.21395 1.20038 1.19563 1.61971 1.59049 1.01539 1.01512 1.22087 0.96386 0.98528 0.90344 1.21567 1.01286 0.92776 0.97187 1.20452 0.80590 0.95852 0.91956 1.21827 1.01726 0.98085 0.92802 1.21750 0.94991 0.90221 0.98253 1.89123 1.23570 1.44332 1.71950 1.21523 0.93731 0.88218 0.91831 0.90523 1.21815 0.96326 1.03509 0.97934 1.21138 0.95694 0.99254 0.97600 1.20694 0.97779 0.98537 0.94499 1.21526 0.92160 0.98999 1.00569 1.21491 1.01091 0.95958 0.94837 1.20681 0.94146 0.99806 0.97183 1.20835 0.95594 0.99691 0.96706 0.92049 0.94534 0.93615 0.94472 0.94240 0.93440 0.90424 0.97723 0.90552 0.89004 0.91410 0.89889 0.98112 0.91826 0.92066 0.88563 0.92366 0.83683 0.82504 0.82893 0.85042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.58 9.43 71.98 0.68 -3.91 16 2 C -0.11 -5.32 4.85 30.59 0.15 -5.17 16 3 C 0.21 10.89 1.40 44.17 0.06 10.96 16 4 H -0.06 -3.48 7.55 -2.39 -0.02 -3.50 16 5 C -0.57 -32.08 6.57 25.60 0.17 -31.91 16 6 H 0.05 2.80 6.95 -2.91 -0.02 2.78 16 7 C -0.03 -1.63 5.24 84.66 0.44 -1.18 16 8 N -0.94 -57.83 12.83 21.45 0.28 -57.56 16 9 Si 1.11 50.95 29.91 68.60 2.05 53.01 16 10 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 N -0.52 -22.66 3.62 -875.07 -3.17 -25.82 16 14 C 0.05 2.11 4.89 86.35 0.42 2.53 16 15 C -0.09 -2.80 5.04 30.56 0.15 -2.65 16 16 C 0.15 4.62 0.68 -11.65 -0.01 4.61 16 17 C -0.11 -3.55 5.07 30.56 0.15 -3.40 16 18 C 0.08 3.24 5.16 86.34 0.45 3.69 16 19 O -0.37 -12.30 9.83 -148.98 -1.46 -13.77 16 20 C 0.10 2.65 3.77 29.98 0.11 2.77 16 21 H 0.08 1.93 8.14 -2.38 -0.02 1.92 16 22 C -0.14 -2.77 9.51 71.98 0.68 -2.09 16 23 C -0.14 -3.15 5.73 -19.69 -0.11 -3.27 16 24 C -0.10 -1.65 9.88 22.21 0.22 -1.43 16 25 C -0.11 -1.63 10.05 22.29 0.22 -1.40 16 26 C -0.12 -1.81 10.05 22.29 0.22 -1.59 16 27 C -0.10 -2.08 9.87 22.22 0.22 -1.86 16 28 C -0.13 -3.25 5.03 -19.79 -0.10 -3.35 16 29 H 0.06 2.46 7.30 -2.39 -0.02 2.45 16 30 H 0.04 1.69 7.44 -2.39 -0.02 1.68 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.99 6.19 -2.39 -0.01 1.98 16 33 H 0.04 1.73 6.27 -2.39 -0.01 1.71 16 34 H 0.26 16.08 6.07 -92.71 -0.56 15.52 16 35 H 0.08 2.91 5.85 -2.39 -0.01 2.89 16 36 H 0.00 0.19 7.85 -2.39 -0.02 0.17 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.09 2.62 8.09 -2.39 -0.02 2.60 16 39 H 0.07 2.12 7.99 -2.39 -0.02 2.10 16 40 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.00 0.03 7.85 -2.39 -0.02 0.01 16 42 H 0.06 2.95 6.42 -2.39 -0.02 2.93 16 43 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 47 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 48 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 49 H 0.13 2.47 8.03 -2.91 -0.02 2.45 16 Total: -1.00 -68.22 370.73 2.96 -65.26 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 1.12 Total: 17.53 kcal Atomic # 6 Polarization: -42.80 SS G_CDS: 4.14 Total: -38.65 kcal Atomic # 7 Polarization: -80.49 SS G_CDS: -2.89 Total: -83.38 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: -1.46 Total: -13.77 kcal Atomic # 14 Polarization: 50.95 SS G_CDS: 2.05 Total: 53.01 kcal Total: -68.22 2.96 -65.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255176401.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.317 kcal (2) G-P(sol) polarization free energy of solvation -68.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds