Wall clock time and date at job start Tue Mar 31 2020 11:12:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52996 * 109.47314 * 2 1
4 4 H 1.09000 * 110.01628 * 306.39192 * 3 2 1
5 5 C 1.54266 * 110.07352 * 67.80556 * 3 2 1
6 6 C 1.54894 * 104.19565 * 142.91846 * 5 3 2
7 7 C 1.54961 * 102.77534 * 322.08420 * 6 5 3
8 8 C 1.53870 * 110.03239 * 184.99955 * 3 2 1
9 9 H 1.09006 * 110.03200 * 121.33155 * 8 3 2
10 10 C 1.52996 * 110.03472 * 359.94698 * 8 3 2
11 11 N 1.46498 * 109.47385 * 175.69071 * 10 8 3
12 12 C 1.34777 * 119.99967 * 180.02562 * 11 10 8
13 13 O 1.21273 * 120.00203 * 359.97438 * 12 11 10
14 14 C 1.50708 * 119.99971 * 180.02562 * 12 11 10
15 15 C 1.50697 * 109.47240 * 179.97438 * 14 12 11
16 16 C 1.37640 * 120.12768 * 265.02356 * 15 14 12
17 17 C 1.38610 * 120.24464 * 179.97438 * 16 15 14
18 18 C 1.38656 * 120.50422 * 0.04171 * 17 16 15
19 19 C 1.37596 * 120.24858 * 359.67265 * 18 17 16
20 20 C 1.40699 * 120.12485 * 84.99897 * 15 14 12
21 21 C 1.41393 * 120.24710 * 0.02562 * 20 15 14
22 22 H 1.08002 * 119.99953 * 26.96580 * 21 20 15
23 23 C 1.39942 * 120.00360 * 206.96740 * 21 20 15
24 24 N 1.30825 * 120.00317 * 199.13462 * 23 21 20
25 25 Si 1.86800 * 119.99904 * 19.12834 * 23 21 20
26 26 H 1.48499 * 109.47279 * 264.72902 * 25 23 21
27 27 H 1.48501 * 109.46968 * 144.72774 * 25 23 21
28 28 H 1.48503 * 109.47146 * 24.72725 * 25 23 21
29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3
30 30 H 1.09004 * 109.47207 * 300.00330 * 1 2 3
31 31 H 1.09000 * 109.47212 * 60.00128 * 1 2 3
32 32 H 1.08994 * 109.47323 * 239.99634 * 2 1 3
33 33 H 1.09002 * 109.46561 * 119.99510 * 2 1 3
34 34 H 1.09001 * 110.48562 * 261.59625 * 5 3 2
35 35 H 1.08993 * 110.48852 * 24.11134 * 5 3 2
36 36 H 1.09001 * 110.75466 * 80.36813 * 6 5 3
37 37 H 1.08998 * 110.75835 * 203.55873 * 6 5 3
38 38 H 1.08991 * 110.48149 * 279.23181 * 7 6 5
39 39 H 1.09006 * 110.53100 * 156.56797 * 7 6 5
40 40 H 1.09002 * 109.47127 * 55.69252 * 10 8 3
41 41 H 1.08998 * 109.47397 * 295.69504 * 10 8 3
42 42 H 0.97004 * 120.00059 * 359.97438 * 11 10 8
43 43 H 1.09002 * 109.46960 * 59.99442 * 14 12 11
44 44 H 1.08996 * 109.46587 * 299.99859 * 14 12 11
45 45 H 1.07995 * 119.87573 * 359.97438 * 16 15 14
46 46 H 1.07997 * 119.74827 * 180.02562 * 17 16 15
47 47 H 1.08003 * 119.87578 * 180.02562 * 18 17 16
48 48 H 1.08003 * 120.13131 * 180.30052 * 19 18 17
49 49 H 0.96995 * 119.99586 * 5.08941 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 1 1.5915 1.9968 -0.8244
5 6 1.7005 2.1241 1.3416
6 6 2.9288 3.0215 1.6332
7 6 4.1134 2.1511 1.1429
8 6 3.5735 1.4593 -0.1260
9 1 3.8692 2.0211 -1.0121
10 6 4.1082 0.0283 -0.2105
11 7 5.5558 0.0602 -0.4331
12 6 6.2465 -1.0920 -0.5417
13 8 5.6697 -2.1552 -0.4546
14 6 7.7358 -1.0592 -0.7702
15 6 8.2624 -2.4687 -0.8535
16 6 8.7792 -3.0804 0.2659
17 6 9.2638 -4.3769 0.1921
18 6 9.2349 -5.0719 -1.0073
19 6 8.7175 -4.4823 -2.1378
20 6 8.2273 -3.1645 -2.0759
21 6 7.6987 -2.5463 -3.2324
22 1 7.7244 -1.4709 -3.3295
23 6 7.1423 -3.3277 -4.2514
24 7 6.9982 -2.8302 -5.4527
25 14 6.6052 -5.0812 -3.8961
26 1 7.6964 -6.0178 -4.2667
27 1 5.3906 -5.3973 -4.6899
28 1 6.3018 -5.2225 -2.4493
29 1 -0.3633 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8900
32 1 1.8934 -0.5139 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 0.7998 2.7301 1.2443
35 1 1.5749 1.3790 2.1271
36 1 2.8720 3.9504 1.0657
37 1 3.0125 3.2271 2.7004
38 1 4.3803 1.4106 1.8968
39 1 4.9726 2.7764 0.9002
40 1 3.6249 -0.4920 -1.0374
41 1 3.8955 -0.4948 0.7218
42 1 6.0172 0.9107 -0.5032
43 1 8.2189 -0.5394 0.0572
44 1 7.9489 -0.5356 -1.7021
45 1 8.8073 -2.5482 1.2052
46 1 9.6672 -4.8494 1.0756
47 1 9.6148 -6.0819 -1.0532
48 1 8.6915 -5.0271 -3.0699
49 1 7.3438 -1.9471 -5.6565
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001325248995.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:18
Heat of formation + Delta-G solvation = -53.648681 kcal
Electronic energy + Delta-G solvation = -26596.371617 eV
Core-core repulsion = 23100.270089 eV
Total energy + Delta-G solvation = -3496.101528 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-39.80473 -38.74979 -37.44307 -34.16582 -33.63971 -33.25257 -31.86681 -30.12904
-29.93092 -27.73693 -26.96939 -24.73364 -23.99304 -22.98020 -21.37346 -20.90334
-20.32144 -19.40806 -18.71104 -18.03403 -16.42122 -16.28205 -15.67086 -15.19781
-15.01170 -14.82198 -14.56558 -14.29656 -14.05823 -13.63075 -13.45634 -13.26177
-13.12350 -12.59540 -12.35995 -12.27637 -12.13498 -12.03779 -11.80738 -11.44347
-11.25708 -11.22384 -11.19536 -10.94405 -10.83214 -10.77416 -10.74427 -10.43201
-10.35857 -10.25467 -10.08355 -9.62188 -9.22535 -9.11024 -8.97618 -8.57532
-7.54343 -7.51083 -7.21011 -4.44656 2.65648 2.82021 3.30268 3.42258
3.47652 3.70338 3.73369 4.15420 4.34975 4.40926 4.48282 4.63829
4.95824 5.07904 5.10011 5.17835 5.33937 5.36184 5.39838 5.41752
5.45938 5.57451 5.63860 5.66887 5.70777 5.80034 5.87052 5.88444
5.91926 5.95863 6.01828 6.03197 6.09005 6.13521 6.21071 6.26126
6.28481 6.29555 6.34796 6.60948 6.79133 6.90297 7.13057 7.41691
7.56629 7.72314 7.77280 7.91375 8.02527 8.07450 8.45454 8.65699
8.84923 8.95058 10.09188
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.014696 B = 0.003621 C = 0.003261
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1904.874383 B = 7731.192328 C = 8583.646674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.128 4.128
3 C -0.082 4.082
4 H 0.073 0.927
5 C -0.118 4.118
6 C -0.125 4.125
7 C -0.120 4.120
8 C -0.101 4.101
9 H 0.077 0.923
10 C 0.126 3.874
11 N -0.746 5.746
12 C 0.517 3.483
13 O -0.518 6.518
14 C -0.071 4.071
15 C -0.171 4.171
16 C -0.068 4.068
17 C -0.248 4.248
18 C -0.076 4.076
19 C -0.244 4.244
20 C 0.114 3.886
21 C -0.510 4.510
22 H 0.075 0.925
23 C 0.049 3.951
24 N -0.820 5.820
25 Si 1.067 2.933
26 H -0.281 1.281
27 H -0.293 1.293
28 H -0.256 1.256
29 H 0.053 0.947
30 H 0.052 0.948
31 H 0.051 0.949
32 H 0.071 0.929
33 H 0.067 0.933
34 H 0.062 0.938
35 H 0.067 0.933
36 H 0.064 0.936
37 H 0.064 0.936
38 H 0.069 0.931
39 H 0.064 0.936
40 H 0.067 0.933
41 H 0.064 0.936
42 H 0.393 0.607
43 H 0.075 0.925
44 H 0.091 0.909
45 H 0.089 0.911
46 H 0.091 0.909
47 H 0.092 0.908
48 H 0.100 0.900
49 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.347 11.594 10.612 17.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.165 4.165
3 C -0.101 4.101
4 H 0.091 0.909
5 C -0.156 4.156
6 C -0.163 4.163
7 C -0.157 4.157
8 C -0.120 4.120
9 H 0.095 0.905
10 C 0.003 3.997
11 N -0.400 5.400
12 C 0.304 3.696
13 O -0.392 6.392
14 C -0.111 4.111
15 C -0.173 4.173
16 C -0.086 4.086
17 C -0.267 4.267
18 C -0.094 4.094
19 C -0.263 4.263
20 C 0.111 3.889
21 C -0.539 4.539
22 H 0.093 0.907
23 C -0.170 4.170
24 N -0.443 5.443
25 Si 0.894 3.106
26 H -0.208 1.208
27 H -0.221 1.221
28 H -0.181 1.181
29 H 0.072 0.928
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.090 0.910
33 H 0.085 0.915
34 H 0.081 0.919
35 H 0.085 0.915
36 H 0.083 0.917
37 H 0.083 0.917
38 H 0.088 0.912
39 H 0.083 0.917
40 H 0.086 0.914
41 H 0.082 0.918
42 H 0.226 0.774
43 H 0.094 0.906
44 H 0.109 0.891
45 H 0.107 0.893
46 H 0.109 0.891
47 H 0.111 0.889
48 H 0.118 0.882
49 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -9.530 9.550 9.910 16.740
hybrid contribution 0.981 1.923 0.455 2.206
sum -8.549 11.474 10.365 17.668
Atomic orbital electron populations
1.21792 0.96073 1.01565 1.01454 1.21817 0.95679 0.96080 1.02951
1.21753 0.93958 0.96456 0.97963 0.90874 1.22451 0.97671 0.98463
0.96986 1.22493 0.94988 0.98133 1.00670 1.22471 0.97654 0.98654
0.96964 1.22052 0.95337 0.95770 0.98845 0.90496 1.21549 0.80878
0.95729 1.01588 1.46139 1.08302 1.08882 1.76665 1.20972 0.90097
0.83196 0.75344 1.90675 1.70997 1.29902 1.47612 1.20263 0.90846
0.97639 1.02349 1.18983 1.09103 0.95435 0.93769 1.20407 0.97596
0.94771 0.95840 1.20297 1.13077 0.96363 0.96954 1.20578 0.98007
0.97478 0.93332 1.20988 1.09675 0.97981 0.97630 1.17485 0.88608
0.90988 0.91787 1.20547 1.36078 0.95822 1.01421 0.90661 1.27154
0.92179 1.06293 0.91381 1.70567 1.34831 1.18721 1.20131 0.83676
0.76126 0.72810 0.78005 1.20816 1.22096 1.18054 0.92804 0.92911
0.92951 0.91044 0.91479 0.91909 0.91450 0.91682 0.91743 0.91223
0.91700 0.91448 0.91801 0.77430 0.90632 0.89100 0.89274 0.89082
0.88949 0.88206 0.90543
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.36 9.77 37.16 0.36 -0.99 16
2 C -0.13 -1.32 4.12 -26.73 -0.11 -1.43 16
3 C -0.08 -0.76 2.93 -89.51 -0.26 -1.03 16
4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
5 C -0.12 -0.96 5.54 -25.07 -0.14 -1.10 16
6 C -0.13 -0.98 6.91 -24.70 -0.17 -1.15 16
7 C -0.12 -1.07 6.05 -25.03 -0.15 -1.22 16
8 C -0.10 -1.03 2.97 -89.50 -0.27 -1.29 16
9 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16
10 C 0.13 1.73 3.78 -4.04 -0.02 1.71 16
11 N -0.75 -11.23 5.39 -60.30 -0.33 -11.55 16
12 C 0.52 10.36 7.82 -10.98 -0.09 10.27 16
13 O -0.52 -12.85 16.03 5.56 0.09 -12.76 16
14 C -0.07 -1.39 5.36 -29.03 -0.16 -1.55 16
15 C -0.17 -4.05 4.43 -103.91 -0.46 -4.51 16
16 C -0.07 -1.51 9.66 -39.66 -0.38 -1.89 16
17 C -0.25 -5.47 10.05 -39.29 -0.39 -5.87 16
18 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16
19 C -0.24 -6.21 7.18 -38.87 -0.28 -6.48 16
20 C 0.11 3.00 5.18 -106.82 -0.55 2.44 16
21 C -0.51 -13.85 8.83 -37.74 -0.33 -14.18 16
22 H 0.08 2.04 6.55 -52.49 -0.34 1.70 16
23 C 0.05 1.34 5.41 -17.34 -0.09 1.25 16
24 N -0.82 -22.58 13.65 55.55 0.76 -21.82 16
25 Si 1.07 26.34 24.83 -169.99 -4.22 22.12 16
26 H -0.28 -6.51 6.66 56.52 0.38 -6.14 16
27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16
28 H -0.26 -6.61 6.82 56.52 0.39 -6.22 16
29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
30 H 0.05 0.42 7.51 -51.93 -0.39 0.03 16
31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16
32 H 0.07 0.84 6.31 -51.93 -0.33 0.52 16
33 H 0.07 0.73 7.03 -51.93 -0.36 0.36 16
34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.07 0.56 7.76 -51.93 -0.40 0.16 16
36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16
37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
38 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16
39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16
40 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16
41 H 0.06 0.93 7.02 -51.93 -0.36 0.56 16
42 H 0.39 4.70 8.33 -40.82 -0.34 4.36 16
43 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16
44 H 0.09 1.76 6.49 -51.93 -0.34 1.42 16
45 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16
46 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16
47 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16
48 H 0.10 2.52 4.37 -52.48 -0.23 2.29 16
49 H 0.28 7.53 8.73 -40.82 -0.36 7.17 16
LS Contribution 378.08 15.07 5.70 5.70
Total: -1.00 -31.14 378.08 -9.98 -41.12
By element:
Atomic # 1 Polarization: 14.44 SS G_CDS: -8.10 Total: 6.34 kcal
Atomic # 6 Polarization: -25.26 SS G_CDS: -3.89 Total: -29.14 kcal
Atomic # 7 Polarization: -33.81 SS G_CDS: 0.43 Total: -33.37 kcal
Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal
Atomic # 14 Polarization: 26.34 SS G_CDS: -4.22 Total: 22.12 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -31.14 -9.98 -41.12 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001325248995.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.529 kcal
(2) G-P(sol) polarization free energy of solvation -31.135 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.664 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal
(6) G-S(sol) free energy of system = (1) + (5) -53.649 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds