Wall clock time and date at job start Tue Mar 31 2020 11:12:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.09000 * 110.01628 * 306.39192 * 3 2 1 5 5 C 1.54266 * 110.07352 * 67.80556 * 3 2 1 6 6 C 1.54894 * 104.19565 * 142.91846 * 5 3 2 7 7 C 1.54961 * 102.77534 * 322.08420 * 6 5 3 8 8 C 1.53870 * 110.03239 * 184.99955 * 3 2 1 9 9 H 1.09006 * 110.03200 * 121.33155 * 8 3 2 10 10 C 1.52996 * 110.03472 * 359.94698 * 8 3 2 11 11 N 1.46498 * 109.47385 * 175.69071 * 10 8 3 12 12 C 1.34777 * 119.99967 * 180.02562 * 11 10 8 13 13 O 1.21273 * 120.00203 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99971 * 180.02562 * 12 11 10 15 15 C 1.50697 * 109.47240 * 179.97438 * 14 12 11 16 16 C 1.37640 * 120.12768 * 265.02356 * 15 14 12 17 17 C 1.38610 * 120.24464 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.50422 * 0.04171 * 17 16 15 19 19 C 1.37596 * 120.24858 * 359.67265 * 18 17 16 20 20 C 1.40699 * 120.12485 * 84.99897 * 15 14 12 21 21 C 1.41393 * 120.24710 * 0.02562 * 20 15 14 22 22 H 1.08002 * 119.99953 * 26.96580 * 21 20 15 23 23 C 1.39942 * 120.00360 * 206.96740 * 21 20 15 24 24 N 1.30825 * 120.00317 * 199.13462 * 23 21 20 25 25 Si 1.86800 * 119.99904 * 19.12834 * 23 21 20 26 26 H 1.48499 * 109.47279 * 264.72902 * 25 23 21 27 27 H 1.48501 * 109.46968 * 144.72774 * 25 23 21 28 28 H 1.48503 * 109.47146 * 24.72725 * 25 23 21 29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47207 * 300.00330 * 1 2 3 31 31 H 1.09000 * 109.47212 * 60.00128 * 1 2 3 32 32 H 1.08994 * 109.47323 * 239.99634 * 2 1 3 33 33 H 1.09002 * 109.46561 * 119.99510 * 2 1 3 34 34 H 1.09001 * 110.48562 * 261.59625 * 5 3 2 35 35 H 1.08993 * 110.48852 * 24.11134 * 5 3 2 36 36 H 1.09001 * 110.75466 * 80.36813 * 6 5 3 37 37 H 1.08998 * 110.75835 * 203.55873 * 6 5 3 38 38 H 1.08991 * 110.48149 * 279.23181 * 7 6 5 39 39 H 1.09006 * 110.53100 * 156.56797 * 7 6 5 40 40 H 1.09002 * 109.47127 * 55.69252 * 10 8 3 41 41 H 1.08998 * 109.47397 * 295.69504 * 10 8 3 42 42 H 0.97004 * 120.00059 * 359.97438 * 11 10 8 43 43 H 1.09002 * 109.46960 * 59.99442 * 14 12 11 44 44 H 1.08996 * 109.46587 * 299.99859 * 14 12 11 45 45 H 1.07995 * 119.87573 * 359.97438 * 16 15 14 46 46 H 1.07997 * 119.74827 * 180.02562 * 17 16 15 47 47 H 1.08003 * 119.87578 * 180.02562 * 18 17 16 48 48 H 1.08003 * 120.13131 * 180.30052 * 19 18 17 49 49 H 0.96995 * 119.99586 * 5.08941 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.7005 2.1241 1.3416 6 6 2.9288 3.0215 1.6332 7 6 4.1134 2.1511 1.1429 8 6 3.5735 1.4593 -0.1260 9 1 3.8692 2.0211 -1.0121 10 6 4.1082 0.0283 -0.2105 11 7 5.5558 0.0602 -0.4331 12 6 6.2465 -1.0920 -0.5417 13 8 5.6697 -2.1552 -0.4546 14 6 7.7358 -1.0592 -0.7702 15 6 8.2624 -2.4687 -0.8535 16 6 8.7792 -3.0804 0.2659 17 6 9.2638 -4.3769 0.1921 18 6 9.2349 -5.0719 -1.0073 19 6 8.7175 -4.4823 -2.1378 20 6 8.2273 -3.1645 -2.0759 21 6 7.6987 -2.5463 -3.2324 22 1 7.7244 -1.4709 -3.3295 23 6 7.1423 -3.3277 -4.2514 24 7 6.9982 -2.8302 -5.4527 25 14 6.6052 -5.0812 -3.8961 26 1 7.6964 -6.0178 -4.2667 27 1 5.3906 -5.3973 -4.6899 28 1 6.3018 -5.2225 -2.4493 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.7998 2.7301 1.2443 35 1 1.5749 1.3790 2.1271 36 1 2.8720 3.9504 1.0657 37 1 3.0125 3.2271 2.7004 38 1 4.3803 1.4106 1.8968 39 1 4.9726 2.7764 0.9002 40 1 3.6249 -0.4920 -1.0374 41 1 3.8955 -0.4948 0.7218 42 1 6.0172 0.9107 -0.5032 43 1 8.2189 -0.5394 0.0572 44 1 7.9489 -0.5356 -1.7021 45 1 8.8073 -2.5482 1.2052 46 1 9.6672 -4.8494 1.0756 47 1 9.6148 -6.0819 -1.0532 48 1 8.6915 -5.0271 -3.0699 49 1 7.3438 -1.9471 -5.6565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325248995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:18 Heat of formation + Delta-G solvation = -53.648681 kcal Electronic energy + Delta-G solvation = -26596.371617 eV Core-core repulsion = 23100.270089 eV Total energy + Delta-G solvation = -3496.101528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.80473 -38.74979 -37.44307 -34.16582 -33.63971 -33.25257 -31.86681 -30.12904 -29.93092 -27.73693 -26.96939 -24.73364 -23.99304 -22.98020 -21.37346 -20.90334 -20.32144 -19.40806 -18.71104 -18.03403 -16.42122 -16.28205 -15.67086 -15.19781 -15.01170 -14.82198 -14.56558 -14.29656 -14.05823 -13.63075 -13.45634 -13.26177 -13.12350 -12.59540 -12.35995 -12.27637 -12.13498 -12.03779 -11.80738 -11.44347 -11.25708 -11.22384 -11.19536 -10.94405 -10.83214 -10.77416 -10.74427 -10.43201 -10.35857 -10.25467 -10.08355 -9.62188 -9.22535 -9.11024 -8.97618 -8.57532 -7.54343 -7.51083 -7.21011 -4.44656 2.65648 2.82021 3.30268 3.42258 3.47652 3.70338 3.73369 4.15420 4.34975 4.40926 4.48282 4.63829 4.95824 5.07904 5.10011 5.17835 5.33937 5.36184 5.39838 5.41752 5.45938 5.57451 5.63860 5.66887 5.70777 5.80034 5.87052 5.88444 5.91926 5.95863 6.01828 6.03197 6.09005 6.13521 6.21071 6.26126 6.28481 6.29555 6.34796 6.60948 6.79133 6.90297 7.13057 7.41691 7.56629 7.72314 7.77280 7.91375 8.02527 8.07450 8.45454 8.65699 8.84923 8.95058 10.09188 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003621 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.874383 B = 7731.192328 C = 8583.646674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.082 4.082 4 H 0.073 0.927 5 C -0.118 4.118 6 C -0.125 4.125 7 C -0.120 4.120 8 C -0.101 4.101 9 H 0.077 0.923 10 C 0.126 3.874 11 N -0.746 5.746 12 C 0.517 3.483 13 O -0.518 6.518 14 C -0.071 4.071 15 C -0.171 4.171 16 C -0.068 4.068 17 C -0.248 4.248 18 C -0.076 4.076 19 C -0.244 4.244 20 C 0.114 3.886 21 C -0.510 4.510 22 H 0.075 0.925 23 C 0.049 3.951 24 N -0.820 5.820 25 Si 1.067 2.933 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.256 1.256 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.064 0.936 42 H 0.393 0.607 43 H 0.075 0.925 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.347 11.594 10.612 17.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.101 4.101 4 H 0.091 0.909 5 C -0.156 4.156 6 C -0.163 4.163 7 C -0.157 4.157 8 C -0.120 4.120 9 H 0.095 0.905 10 C 0.003 3.997 11 N -0.400 5.400 12 C 0.304 3.696 13 O -0.392 6.392 14 C -0.111 4.111 15 C -0.173 4.173 16 C -0.086 4.086 17 C -0.267 4.267 18 C -0.094 4.094 19 C -0.263 4.263 20 C 0.111 3.889 21 C -0.539 4.539 22 H 0.093 0.907 23 C -0.170 4.170 24 N -0.443 5.443 25 Si 0.894 3.106 26 H -0.208 1.208 27 H -0.221 1.221 28 H -0.181 1.181 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.226 0.774 43 H 0.094 0.906 44 H 0.109 0.891 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.530 9.550 9.910 16.740 hybrid contribution 0.981 1.923 0.455 2.206 sum -8.549 11.474 10.365 17.668 Atomic orbital electron populations 1.21792 0.96073 1.01565 1.01454 1.21817 0.95679 0.96080 1.02951 1.21753 0.93958 0.96456 0.97963 0.90874 1.22451 0.97671 0.98463 0.96986 1.22493 0.94988 0.98133 1.00670 1.22471 0.97654 0.98654 0.96964 1.22052 0.95337 0.95770 0.98845 0.90496 1.21549 0.80878 0.95729 1.01588 1.46139 1.08302 1.08882 1.76665 1.20972 0.90097 0.83196 0.75344 1.90675 1.70997 1.29902 1.47612 1.20263 0.90846 0.97639 1.02349 1.18983 1.09103 0.95435 0.93769 1.20407 0.97596 0.94771 0.95840 1.20297 1.13077 0.96363 0.96954 1.20578 0.98007 0.97478 0.93332 1.20988 1.09675 0.97981 0.97630 1.17485 0.88608 0.90988 0.91787 1.20547 1.36078 0.95822 1.01421 0.90661 1.27154 0.92179 1.06293 0.91381 1.70567 1.34831 1.18721 1.20131 0.83676 0.76126 0.72810 0.78005 1.20816 1.22096 1.18054 0.92804 0.92911 0.92951 0.91044 0.91479 0.91909 0.91450 0.91682 0.91743 0.91223 0.91700 0.91448 0.91801 0.77430 0.90632 0.89100 0.89274 0.89082 0.88949 0.88206 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.77 37.16 0.36 -0.99 16 2 C -0.13 -1.32 4.12 -26.73 -0.11 -1.43 16 3 C -0.08 -0.76 2.93 -89.51 -0.26 -1.03 16 4 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.12 -0.96 5.54 -25.07 -0.14 -1.10 16 6 C -0.13 -0.98 6.91 -24.70 -0.17 -1.15 16 7 C -0.12 -1.07 6.05 -25.03 -0.15 -1.22 16 8 C -0.10 -1.03 2.97 -89.50 -0.27 -1.29 16 9 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 10 C 0.13 1.73 3.78 -4.04 -0.02 1.71 16 11 N -0.75 -11.23 5.39 -60.30 -0.33 -11.55 16 12 C 0.52 10.36 7.82 -10.98 -0.09 10.27 16 13 O -0.52 -12.85 16.03 5.56 0.09 -12.76 16 14 C -0.07 -1.39 5.36 -29.03 -0.16 -1.55 16 15 C -0.17 -4.05 4.43 -103.91 -0.46 -4.51 16 16 C -0.07 -1.51 9.66 -39.66 -0.38 -1.89 16 17 C -0.25 -5.47 10.05 -39.29 -0.39 -5.87 16 18 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 19 C -0.24 -6.21 7.18 -38.87 -0.28 -6.48 16 20 C 0.11 3.00 5.18 -106.82 -0.55 2.44 16 21 C -0.51 -13.85 8.83 -37.74 -0.33 -14.18 16 22 H 0.08 2.04 6.55 -52.49 -0.34 1.70 16 23 C 0.05 1.34 5.41 -17.34 -0.09 1.25 16 24 N -0.82 -22.58 13.65 55.55 0.76 -21.82 16 25 Si 1.07 26.34 24.83 -169.99 -4.22 22.12 16 26 H -0.28 -6.51 6.66 56.52 0.38 -6.14 16 27 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 28 H -0.26 -6.61 6.82 56.52 0.39 -6.22 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.42 7.51 -51.93 -0.39 0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.84 6.31 -51.93 -0.33 0.52 16 33 H 0.07 0.73 7.03 -51.93 -0.36 0.36 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.56 7.76 -51.93 -0.40 0.16 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.69 7.77 -51.93 -0.40 0.29 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 1.06 6.34 -51.93 -0.33 0.73 16 41 H 0.06 0.93 7.02 -51.93 -0.36 0.56 16 42 H 0.39 4.70 8.33 -40.82 -0.34 4.36 16 43 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 44 H 0.09 1.76 6.49 -51.93 -0.34 1.42 16 45 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 46 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 47 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 48 H 0.10 2.52 4.37 -52.48 -0.23 2.29 16 49 H 0.28 7.53 8.73 -40.82 -0.36 7.17 16 LS Contribution 378.08 15.07 5.70 5.70 Total: -1.00 -31.14 378.08 -9.98 -41.12 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -8.10 Total: 6.34 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: -3.89 Total: -29.14 kcal Atomic # 7 Polarization: -33.81 SS G_CDS: 0.43 Total: -33.37 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 26.34 SS G_CDS: -4.22 Total: 22.12 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.14 -9.98 -41.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325248995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.529 kcal (2) G-P(sol) polarization free energy of solvation -31.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds