Wall clock time and date at job start Tue Mar 31 2020 11:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47314 * 2 1 4 4 H 1.09000 * 110.01628 * 306.39192 * 3 2 1 5 5 C 1.54266 * 110.07352 * 67.80556 * 3 2 1 6 6 C 1.54894 * 104.19565 * 142.91846 * 5 3 2 7 7 C 1.54961 * 102.77534 * 322.08420 * 6 5 3 8 8 C 1.53870 * 110.03239 * 184.99955 * 3 2 1 9 9 H 1.09006 * 110.03200 * 121.33155 * 8 3 2 10 10 C 1.52996 * 110.03472 * 359.94698 * 8 3 2 11 11 N 1.46498 * 109.47385 * 175.69071 * 10 8 3 12 12 C 1.34777 * 119.99967 * 180.02562 * 11 10 8 13 13 O 1.21273 * 120.00203 * 359.97438 * 12 11 10 14 14 C 1.50708 * 119.99971 * 180.02562 * 12 11 10 15 15 C 1.50697 * 109.47240 * 179.97438 * 14 12 11 16 16 C 1.37640 * 120.12768 * 265.02356 * 15 14 12 17 17 C 1.38610 * 120.24464 * 179.97438 * 16 15 14 18 18 C 1.38656 * 120.50422 * 0.04171 * 17 16 15 19 19 C 1.37596 * 120.24858 * 359.67265 * 18 17 16 20 20 C 1.40699 * 120.12485 * 84.99897 * 15 14 12 21 21 C 1.41393 * 120.24710 * 0.02562 * 20 15 14 22 22 H 1.08002 * 119.99953 * 26.96580 * 21 20 15 23 23 C 1.39942 * 120.00360 * 206.96740 * 21 20 15 24 24 N 1.30825 * 120.00317 * 199.13462 * 23 21 20 25 25 Si 1.86800 * 119.99904 * 19.12834 * 23 21 20 26 26 H 1.48499 * 109.47279 * 264.72902 * 25 23 21 27 27 H 1.48501 * 109.46968 * 144.72774 * 25 23 21 28 28 H 1.48503 * 109.47146 * 24.72725 * 25 23 21 29 29 H 1.08999 * 109.47057 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47207 * 300.00330 * 1 2 3 31 31 H 1.09000 * 109.47212 * 60.00128 * 1 2 3 32 32 H 1.08994 * 109.47323 * 239.99634 * 2 1 3 33 33 H 1.09002 * 109.46561 * 119.99510 * 2 1 3 34 34 H 1.09001 * 110.48562 * 261.59625 * 5 3 2 35 35 H 1.08993 * 110.48852 * 24.11134 * 5 3 2 36 36 H 1.09001 * 110.75466 * 80.36813 * 6 5 3 37 37 H 1.08998 * 110.75835 * 203.55873 * 6 5 3 38 38 H 1.08991 * 110.48149 * 279.23181 * 7 6 5 39 39 H 1.09006 * 110.53100 * 156.56797 * 7 6 5 40 40 H 1.09002 * 109.47127 * 55.69252 * 10 8 3 41 41 H 1.08998 * 109.47397 * 295.69504 * 10 8 3 42 42 H 0.97004 * 120.00059 * 359.97438 * 11 10 8 43 43 H 1.09002 * 109.46960 * 59.99442 * 14 12 11 44 44 H 1.08996 * 109.46587 * 299.99859 * 14 12 11 45 45 H 1.07995 * 119.87573 * 359.97438 * 16 15 14 46 46 H 1.07997 * 119.74827 * 180.02562 * 17 16 15 47 47 H 1.08003 * 119.87578 * 180.02562 * 18 17 16 48 48 H 1.08003 * 120.13131 * 180.30052 * 19 18 17 49 49 H 0.96995 * 119.99586 * 5.08941 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5915 1.9968 -0.8244 5 6 1.7005 2.1241 1.3416 6 6 2.9288 3.0215 1.6332 7 6 4.1134 2.1511 1.1429 8 6 3.5735 1.4593 -0.1260 9 1 3.8692 2.0211 -1.0121 10 6 4.1082 0.0283 -0.2105 11 7 5.5558 0.0602 -0.4331 12 6 6.2465 -1.0920 -0.5417 13 8 5.6697 -2.1552 -0.4546 14 6 7.7358 -1.0592 -0.7702 15 6 8.2624 -2.4687 -0.8535 16 6 8.7792 -3.0804 0.2659 17 6 9.2638 -4.3769 0.1921 18 6 9.2349 -5.0719 -1.0073 19 6 8.7175 -4.4823 -2.1378 20 6 8.2273 -3.1645 -2.0759 21 6 7.6987 -2.5463 -3.2324 22 1 7.7244 -1.4709 -3.3295 23 6 7.1423 -3.3277 -4.2514 24 7 6.9982 -2.8302 -5.4527 25 14 6.6052 -5.0812 -3.8961 26 1 7.6964 -6.0178 -4.2667 27 1 5.3906 -5.3973 -4.6899 28 1 6.3018 -5.2225 -2.4493 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.7998 2.7301 1.2443 35 1 1.5749 1.3790 2.1271 36 1 2.8720 3.9504 1.0657 37 1 3.0125 3.2271 2.7004 38 1 4.3803 1.4106 1.8968 39 1 4.9726 2.7764 0.9002 40 1 3.6249 -0.4920 -1.0374 41 1 3.8955 -0.4948 0.7218 42 1 6.0172 0.9107 -0.5032 43 1 8.2189 -0.5394 0.0572 44 1 7.9489 -0.5356 -1.7021 45 1 8.8073 -2.5482 1.2052 46 1 9.6672 -4.8494 1.0756 47 1 9.6148 -6.0819 -1.0532 48 1 8.6915 -5.0271 -3.0699 49 1 7.3438 -1.9471 -5.6565 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325248995.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:17 Heat of formation + Delta-G solvation = -71.054717 kcal Electronic energy + Delta-G solvation = -26597.126400 eV Core-core repulsion = 23100.270089 eV Total energy + Delta-G solvation = -3496.856311 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04281 -40.05299 -39.12885 -35.62216 -35.51348 -34.01528 -33.56994 -32.01303 -31.04657 -28.56481 -28.43120 -26.49451 -25.25724 -23.78777 -23.22913 -22.03446 -21.52788 -20.99147 -20.05183 -19.66810 -17.78203 -17.49486 -17.13726 -16.67961 -16.42807 -16.07451 -15.71268 -15.62385 -15.48463 -15.29193 -14.69019 -14.65548 -14.30176 -14.08064 -13.90516 -13.67486 -13.43697 -13.25611 -13.13330 -12.87784 -12.78094 -12.60806 -12.20131 -12.16422 -11.93972 -11.86064 -11.76246 -11.63258 -11.56226 -11.46438 -11.27095 -11.19976 -11.13997 -10.93041 -10.75640 -9.96220 -9.47993 -9.32583 -9.24384 -6.47748 0.82228 0.92154 1.30848 1.50937 1.72629 1.83962 2.16713 2.37815 2.67721 3.52279 3.56570 3.63460 3.71518 4.06727 4.14524 4.25481 4.28083 4.34498 4.37568 4.42155 4.45083 4.48021 4.50984 4.56600 4.67272 4.69294 4.74860 4.83294 4.87451 4.88133 4.94822 4.98253 5.00388 5.09205 5.18021 5.23600 5.25634 5.26121 5.30385 5.43841 5.47711 5.50858 5.55413 5.60460 5.62450 5.83390 5.90397 6.03978 6.18984 6.48309 6.67389 6.74645 6.88449 7.45291 8.04327 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014696 B = 0.003621 C = 0.003261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.874383 B = 7731.192328 C = 8583.646674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.128 4.128 3 C -0.080 4.080 4 H 0.080 0.920 5 C -0.115 4.115 6 C -0.120 4.120 7 C -0.118 4.118 8 C -0.094 4.094 9 H 0.082 0.918 10 C 0.129 3.871 11 N -0.725 5.725 12 C 0.515 3.485 13 O -0.575 6.575 14 C -0.071 4.071 15 C -0.177 4.177 16 C -0.079 4.079 17 C -0.234 4.234 18 C -0.088 4.088 19 C -0.266 4.266 20 C 0.085 3.915 21 C -0.532 4.532 22 H 0.061 0.939 23 C 0.017 3.983 24 N -0.848 5.848 25 Si 1.094 2.906 26 H -0.259 1.259 27 H -0.287 1.287 28 H -0.278 1.278 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.055 0.945 42 H 0.411 0.589 43 H 0.119 0.881 44 H 0.088 0.912 45 H 0.125 0.875 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.094 0.906 49 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.016 12.801 13.225 20.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.099 4.099 4 H 0.098 0.902 5 C -0.152 4.152 6 C -0.158 4.158 7 C -0.156 4.156 8 C -0.113 4.113 9 H 0.100 0.900 10 C 0.006 3.994 11 N -0.378 5.378 12 C 0.303 3.697 13 O -0.453 6.453 14 C -0.111 4.111 15 C -0.179 4.179 16 C -0.097 4.097 17 C -0.253 4.253 18 C -0.106 4.106 19 C -0.285 4.285 20 C 0.083 3.917 21 C -0.562 4.562 22 H 0.079 0.921 23 C -0.196 4.196 24 N -0.473 5.473 25 Si 0.919 3.081 26 H -0.185 1.185 27 H -0.215 1.215 28 H -0.203 1.203 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.247 0.753 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.141 0.859 48 H 0.112 0.888 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.183 10.812 12.518 18.919 hybrid contribution 0.958 1.553 -0.116 1.829 sum -8.224 12.365 12.402 19.348 Atomic orbital electron populations 1.21765 0.94812 1.01601 1.02363 1.21779 0.96840 0.96676 1.01270 1.21763 0.93129 0.95771 0.99270 0.90180 1.22436 0.98561 0.98493 0.95758 1.22483 0.93807 0.98048 1.01419 1.22462 0.98716 0.98654 0.95739 1.22033 0.96036 0.93202 1.00040 0.89969 1.21589 0.79714 0.98078 1.00043 1.45952 1.08904 1.08463 1.74526 1.21071 0.90438 0.83493 0.74746 1.90653 1.71982 1.32057 1.50618 1.20314 0.90810 0.96003 1.03945 1.19481 1.07942 0.97087 0.93345 1.20882 0.96811 0.95276 0.96763 1.20860 1.10553 0.96173 0.97730 1.20983 0.97586 0.99093 0.92943 1.21185 1.10651 0.98079 0.98610 1.17775 0.89364 0.91963 0.92639 1.20506 1.37928 0.95185 1.02533 0.92096 1.27820 0.92276 1.08145 0.91409 1.70598 1.37199 1.18934 1.20537 0.83289 0.76794 0.71554 0.76491 1.18458 1.21464 1.20305 0.93279 0.91527 0.92431 0.93437 0.92503 0.90543 0.91824 0.90673 0.90785 0.92221 0.90447 0.93997 0.92664 0.75289 0.86345 0.89382 0.85751 0.85423 0.85856 0.88802 0.91051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.77 71.98 0.70 -1.86 16 2 C -0.13 -2.68 4.12 30.59 0.13 -2.55 16 3 C -0.08 -1.40 2.93 -10.07 -0.03 -1.43 16 4 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.12 -1.60 5.54 31.67 0.18 -1.42 16 6 C -0.12 -1.52 6.91 31.91 0.22 -1.30 16 7 C -0.12 -1.84 6.05 31.70 0.19 -1.65 16 8 C -0.09 -1.81 2.97 -10.07 -0.03 -1.84 16 9 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 10 C 0.13 3.59 3.78 86.38 0.33 3.91 16 11 N -0.72 -21.46 5.39 -463.07 -2.50 -23.96 16 12 C 0.51 20.61 7.82 87.66 0.69 21.30 16 13 O -0.57 -29.19 16.03 -3.01 -0.05 -29.24 16 14 C -0.07 -2.70 5.36 29.10 0.16 -2.55 16 15 C -0.18 -8.19 4.43 -19.41 -0.09 -8.28 16 16 C -0.08 -3.29 9.66 22.22 0.21 -3.07 16 17 C -0.23 -9.53 10.05 22.46 0.23 -9.30 16 18 C -0.09 -3.86 10.02 22.22 0.22 -3.64 16 19 C -0.27 -13.51 7.18 22.73 0.16 -13.35 16 20 C 0.09 4.51 5.18 -21.29 -0.11 4.40 16 21 C -0.53 -29.97 8.83 23.46 0.21 -29.76 16 22 H 0.06 3.48 6.55 -2.91 -0.02 3.46 16 23 C 0.02 0.99 5.41 85.26 0.46 1.45 16 24 N -0.85 -48.61 13.65 21.83 0.30 -48.31 16 25 Si 1.09 54.81 24.83 68.60 1.70 56.52 16 26 H -0.26 -11.83 6.66 99.48 0.66 -11.17 16 27 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 28 H -0.28 -14.70 6.82 99.48 0.68 -14.03 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.97 7.51 -2.39 -0.02 0.95 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.21 6.31 -2.39 -0.02 1.19 16 33 H 0.06 1.28 7.03 -2.39 -0.02 1.26 16 34 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.06 0.95 7.76 -2.39 -0.02 0.93 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 1.07 7.77 -2.39 -0.02 1.05 16 39 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.04 1.40 6.34 -2.39 -0.02 1.38 16 41 H 0.06 1.64 7.02 -2.39 -0.02 1.63 16 42 H 0.41 9.15 8.33 -92.71 -0.77 8.37 16 43 H 0.12 3.40 8.05 -2.39 -0.02 3.38 16 44 H 0.09 3.41 6.49 -2.39 -0.02 3.39 16 45 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 46 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 47 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 48 H 0.09 4.77 4.37 -2.91 -0.01 4.76 16 49 H 0.28 15.58 8.73 -92.71 -0.81 14.77 16 Total: -1.00 -70.06 378.08 3.34 -66.72 By element: Atomic # 1 Polarization: 29.16 SS G_CDS: 0.06 Total: 29.21 kcal Atomic # 6 Polarization: -54.76 SS G_CDS: 3.82 Total: -50.94 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -2.20 Total: -72.27 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.05 Total: -29.24 kcal Atomic # 14 Polarization: 54.81 SS G_CDS: 1.70 Total: 56.52 kcal Total: -70.06 3.34 -66.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325248995.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.334 kcal (2) G-P(sol) polarization free energy of solvation -70.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds