Wall clock time and date at job start Tue Mar 31 2020 12:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.78246 * 2 1 4 4 C 1.54244 * 109.62117 * 239.52358 * 2 1 3 5 5 C 1.45548 * 112.39848 * 160.30925 * 4 2 1 6 6 C 1.54246 * 112.40828 * 61.93805 * 5 4 2 7 7 C 1.50473 * 108.51189 * 279.99862 * 6 5 4 8 8 H 1.08995 * 108.87557 * 333.47728 * 7 6 5 9 9 N 1.46496 * 108.87600 * 214.93546 * 7 6 5 10 10 C 1.34778 * 120.00057 * 84.99862 * 9 7 6 11 11 O 1.21275 * 120.00130 * 0.27684 * 10 9 7 12 12 C 1.50698 * 120.00194 * 179.97438 * 10 9 7 13 13 H 1.08995 * 109.47283 * 300.00844 * 12 10 9 14 14 C 1.50711 * 109.47003 * 60.00364 * 12 10 9 15 15 H 1.07996 * 119.99685 * 235.34531 * 14 12 10 16 16 C 1.37872 * 120.00069 * 55.33915 * 14 12 10 17 17 N 1.31518 * 119.99859 * 1.99760 * 16 14 12 18 18 Si 1.86797 * 120.00165 * 181.99956 * 16 14 12 19 19 H 1.48499 * 109.47349 * 90.00070 * 18 16 14 20 20 H 1.48500 * 109.47038 * 210.00086 * 18 16 14 21 21 H 1.48505 * 109.46975 * 329.99829 * 18 16 14 22 22 C 1.50699 * 109.47537 * 179.97438 * 12 10 9 23 23 C 1.38232 * 120.00364 * 226.97262 * 22 12 10 24 24 C 1.38240 * 119.99979 * 179.78780 * 23 22 12 25 25 C 1.38235 * 119.99640 * 0.44413 * 24 23 22 26 26 C 1.38230 * 120.00145 * 359.80930 * 25 24 23 27 27 C 1.38232 * 120.00234 * 359.97438 * 26 25 24 28 28 C 1.54062 * 112.49563 * 94.15875 * 7 6 5 29 29 C 1.50470 * 109.63060 * 120.48955 * 2 1 3 30 30 H 1.08998 * 109.46859 * 180.48044 * 1 2 3 31 31 H 1.09003 * 109.46492 * 300.47588 * 1 2 3 32 32 H 1.08989 * 109.47384 * 60.47808 * 1 2 3 33 33 H 1.08998 * 108.90035 * 39.55641 * 4 2 1 34 34 H 1.09006 * 108.89685 * 281.05553 * 4 2 1 35 35 H 1.08991 * 108.89459 * 301.18297 * 5 4 2 36 36 H 1.09003 * 108.89126 * 182.68910 * 5 4 2 37 37 H 1.09003 * 109.62569 * 160.29127 * 6 5 4 38 38 H 1.08993 * 109.63079 * 39.70925 * 6 5 4 39 39 H 0.97004 * 120.00313 * 265.00484 * 9 7 6 40 40 H 0.97004 * 120.00298 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.99681 * 359.97438 * 23 22 12 42 42 H 1.07998 * 119.99995 * 180.27216 * 24 23 22 43 43 H 1.08005 * 119.99949 * 179.83509 * 25 24 23 44 44 H 1.08006 * 120.00132 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.99955 * 179.97438 * 27 26 25 46 46 H 1.08998 * 108.81813 * 79.14615 * 28 7 6 47 47 H 1.09003 * 108.81102 * 197.42262 * 28 7 6 48 48 H 1.09001 * 108.87754 * 334.62982 * 29 2 1 49 49 H 1.08994 * 108.88078 * 93.07730 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0480 -0.7369 -1.2521 5 6 3.4276 -0.3953 -1.5657 6 6 4.4028 -0.7946 -0.4393 7 6 4.3397 0.2515 0.6405 8 1 4.0335 1.1986 0.1964 9 7 5.6739 0.4116 1.2239 10 6 6.5677 1.2379 0.6452 11 8 6.2657 1.8528 -0.3556 12 6 7.9400 1.4031 1.2456 13 1 7.8482 1.7848 2.2624 14 6 8.6409 0.0692 1.2713 15 1 9.0290 -0.3190 2.2013 16 6 8.7866 -0.6555 0.1075 17 7 8.3489 -0.1652 -1.0317 18 14 9.6057 -2.3339 0.1486 19 1 8.5779 -3.3808 0.3786 20 1 10.2861 -2.5845 -1.1473 21 1 10.6042 -2.3706 1.2472 22 6 8.7387 2.3736 0.4142 23 6 10.0352 2.0654 0.0470 24 6 10.7662 2.9538 -0.7194 25 6 10.2038 4.1544 -1.1107 26 6 8.9091 4.4649 -0.7390 27 6 8.1766 3.5746 0.0235 28 6 3.3470 -0.1160 1.7599 29 6 2.0356 -0.7191 1.2213 30 1 -0.3633 -1.0276 0.0086 31 1 -0.3632 0.5212 0.8857 32 1 -0.3633 0.5063 -0.8941 33 1 1.4177 -0.4750 -2.1019 34 1 1.9803 -1.8115 -1.0826 35 1 3.4969 0.6803 -1.7276 36 1 3.7185 -0.9079 -2.4826 37 1 5.4166 -0.8511 -0.8356 38 1 4.1125 -1.7619 -0.0294 39 1 5.9142 -0.0772 2.0266 40 1 8.4517 -0.6749 -1.8506 41 1 10.4759 1.1292 0.3562 42 1 11.7776 2.7111 -1.0100 43 1 10.7759 4.8497 -1.7072 44 1 8.4696 5.4028 -1.0451 45 1 7.1651 3.8174 0.3143 46 1 3.8192 -0.8389 2.4252 47 1 3.1124 0.7826 2.3306 48 1 1.2763 -0.6657 2.0015 49 1 2.2062 -1.7656 0.9690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435929167.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:52 Heat of formation + Delta-G solvation = -36.680180 kcal Electronic energy + Delta-G solvation = -27699.310651 eV Core-core repulsion = 24203.944932 eV Total energy + Delta-G solvation = -3495.365719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.51964 -38.50088 -37.15808 -34.21622 -33.54334 -32.48990 -30.85926 -30.56033 -29.62926 -27.56490 -26.67121 -24.39958 -23.69103 -22.74343 -21.22999 -20.53995 -20.26131 -19.05606 -18.95087 -16.75101 -15.93071 -15.41746 -15.16497 -15.00014 -14.75556 -14.44418 -14.25007 -13.85524 -13.62828 -13.24725 -13.21998 -12.98669 -12.73451 -12.39017 -12.32590 -12.13363 -12.01805 -11.98606 -11.64491 -11.28375 -11.22285 -10.96594 -10.79753 -10.74447 -10.51280 -10.39693 -10.35552 -10.14354 -10.07096 -10.00631 -9.89267 -9.61115 -9.32140 -8.66989 -8.20842 -7.87833 -7.64088 -7.34858 -6.09914 -4.25860 2.59330 2.65618 3.20630 3.30670 3.30899 4.19780 4.29508 4.44739 4.73164 4.83109 4.99100 5.07519 5.17654 5.30267 5.36691 5.39092 5.57869 5.61587 5.71304 5.72873 5.84685 5.89091 5.92529 5.95851 6.01442 6.08618 6.12090 6.20241 6.33013 6.34865 6.36042 6.39836 6.45671 6.54866 6.61119 6.67687 6.72157 6.80216 6.88657 6.97622 7.02433 7.18037 7.26130 7.58879 7.67659 7.71514 7.73134 7.84576 8.21123 8.32089 8.67843 8.89323 9.40276 9.80314 10.90074 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.004603 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.223693 B = 6081.521053 C = 7166.321531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.155 3.845 8 H 0.075 0.925 9 N -0.736 5.736 10 C 0.552 3.448 11 O -0.548 6.548 12 C 0.055 3.945 13 H 0.054 0.946 14 C -0.539 4.539 15 H 0.065 0.935 16 C 0.077 3.923 17 N -0.839 5.839 18 Si 0.883 3.117 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.012 4.012 23 C -0.066 4.066 24 C -0.148 4.148 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.100 4.100 28 C -0.122 4.122 29 C -0.107 4.107 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.062 0.938 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.392 0.608 40 H 0.264 0.736 41 H 0.127 0.873 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.100 0.900 45 H 0.106 0.894 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 -0.093 3.593 10.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.112 4.112 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.154 4.154 6 C -0.162 4.162 7 C 0.050 3.950 8 H 0.093 0.907 9 N -0.388 5.388 10 C 0.341 3.659 11 O -0.424 6.424 12 C 0.033 3.967 13 H 0.072 0.928 14 C -0.577 4.577 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.472 5.472 18 Si 0.710 3.290 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.197 1.197 22 C -0.013 4.013 23 C -0.084 4.084 24 C -0.166 4.166 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.118 4.118 28 C -0.161 4.161 29 C -0.145 4.145 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.225 0.775 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.119 0.881 43 H 0.117 0.883 44 H 0.118 0.882 45 H 0.125 0.875 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.982 0.338 2.631 10.328 hybrid contribution 0.559 -1.428 -0.051 1.534 sum -9.423 -1.090 2.580 9.830 Atomic orbital electron populations 1.21876 0.95548 1.01363 1.01326 1.20946 0.94840 1.00367 0.95074 0.90788 1.20561 0.96891 0.99873 0.97182 1.20377 0.94372 1.01986 0.98643 1.21783 1.00881 0.97952 0.95624 1.20516 0.82977 0.98942 0.92612 0.90705 1.46039 1.12781 1.48588 1.31415 1.20906 0.85568 0.76243 0.83178 1.90526 1.78881 1.47977 1.25029 1.17899 0.89629 0.95367 0.93776 0.92763 1.20676 1.39982 1.02158 0.94880 0.91687 1.25015 0.95058 0.97480 0.95582 1.70079 1.42464 1.36423 0.98219 0.86729 0.79812 0.84786 0.77640 1.20606 1.21196 1.19684 1.19815 0.93681 0.92078 0.95702 1.21142 0.94247 0.97810 0.95164 1.20983 0.99316 0.95219 1.01113 1.20758 0.95873 0.97462 1.02296 1.20814 0.94925 0.99308 1.01242 1.20967 0.98222 0.94234 0.98380 1.22159 0.95133 1.00777 0.97983 1.21336 0.96165 0.99896 0.97104 0.92965 0.92925 0.92930 0.92829 0.92634 0.91906 0.92775 0.89782 0.92855 0.77476 0.92620 0.85503 0.88127 0.88296 0.88194 0.87547 0.91929 0.92214 0.92360 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.87 37.16 0.33 -1.04 16 2 C -0.09 -1.08 2.40 -91.23 -0.22 -1.30 16 3 H 0.07 0.95 6.97 -51.93 -0.36 0.59 16 4 C -0.11 -1.34 4.68 -29.59 -0.14 -1.48 16 5 C -0.12 -1.80 5.26 -29.59 -0.16 -1.96 16 6 C -0.12 -2.17 5.27 -27.34 -0.14 -2.31 16 7 C 0.15 2.62 1.98 -68.64 -0.14 2.49 16 8 H 0.07 1.42 5.97 -51.93 -0.31 1.11 16 9 N -0.74 -14.27 4.82 -54.50 -0.26 -14.53 16 10 C 0.55 12.77 5.24 -10.99 -0.06 12.71 16 11 O -0.55 -14.26 13.57 5.56 0.08 -14.18 16 12 C 0.05 1.27 2.78 -94.07 -0.26 1.01 16 13 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 14 C -0.54 -13.00 7.11 -34.44 -0.24 -13.25 16 15 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 16 C 0.08 1.91 4.00 -17.82 -0.07 1.83 16 17 N -0.84 -22.48 10.90 55.43 0.60 -21.88 16 18 Si 0.88 19.73 29.54 -169.99 -5.02 14.71 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 22 C -0.01 -0.28 4.51 -104.63 -0.47 -0.75 16 23 C -0.07 -1.54 8.20 -39.58 -0.32 -1.87 16 24 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 25 C -0.15 -2.92 10.05 -39.59 -0.40 -3.32 16 26 C -0.14 -3.00 10.05 -39.59 -0.40 -3.40 16 27 C -0.10 -2.28 8.21 -39.58 -0.32 -2.60 16 28 C -0.12 -1.60 5.40 -25.62 -0.14 -1.74 16 29 C -0.11 -1.22 4.89 -27.44 -0.13 -1.35 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.05 0.48 8.13 -51.94 -0.42 0.06 16 33 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 34 H 0.05 0.67 7.47 -51.93 -0.39 0.28 16 35 H 0.06 1.07 7.47 -51.93 -0.39 0.69 16 36 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.08 1.87 7.79 -51.93 -0.40 1.46 16 38 H 0.05 0.86 6.98 -51.93 -0.36 0.49 16 39 H 0.39 7.00 8.34 -40.82 -0.34 6.66 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.13 3.07 6.04 -52.49 -0.32 2.76 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 43 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 44 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 45 H 0.11 2.41 7.01 -52.48 -0.37 2.04 16 46 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 49 H 0.06 0.70 6.63 -51.93 -0.34 0.36 16 LS Contribution 372.46 15.07 5.61 5.61 Total: -1.00 -28.19 372.46 -10.83 -39.02 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -8.16 Total: 13.13 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -3.69 Total: -21.88 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.34 Total: -36.41 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: 0.08 Total: -14.18 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.19 -10.83 -39.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435929167.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.343 kcal (2) G-P(sol) polarization free energy of solvation -28.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds