Wall clock time and date at job start Tue Mar 31 2020 12:40:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.78246 * 2 1 4 4 C 1.54244 * 109.62117 * 239.52358 * 2 1 3 5 5 C 1.45548 * 112.39848 * 160.30925 * 4 2 1 6 6 C 1.54246 * 112.40828 * 61.93805 * 5 4 2 7 7 C 1.50473 * 108.51189 * 279.99862 * 6 5 4 8 8 H 1.08995 * 108.87557 * 333.47728 * 7 6 5 9 9 N 1.46496 * 108.87600 * 214.93546 * 7 6 5 10 10 C 1.34778 * 120.00057 * 84.99862 * 9 7 6 11 11 O 1.21275 * 120.00130 * 0.27684 * 10 9 7 12 12 C 1.50698 * 120.00194 * 179.97438 * 10 9 7 13 13 H 1.08995 * 109.47283 * 300.00844 * 12 10 9 14 14 C 1.50711 * 109.47003 * 60.00364 * 12 10 9 15 15 H 1.07996 * 119.99685 * 235.34531 * 14 12 10 16 16 C 1.37872 * 120.00069 * 55.33915 * 14 12 10 17 17 N 1.31518 * 119.99859 * 1.99760 * 16 14 12 18 18 Si 1.86797 * 120.00165 * 181.99956 * 16 14 12 19 19 H 1.48499 * 109.47349 * 90.00070 * 18 16 14 20 20 H 1.48500 * 109.47038 * 210.00086 * 18 16 14 21 21 H 1.48505 * 109.46975 * 329.99829 * 18 16 14 22 22 C 1.50699 * 109.47537 * 179.97438 * 12 10 9 23 23 C 1.38232 * 120.00364 * 226.97262 * 22 12 10 24 24 C 1.38240 * 119.99979 * 179.78780 * 23 22 12 25 25 C 1.38235 * 119.99640 * 0.44413 * 24 23 22 26 26 C 1.38230 * 120.00145 * 359.80930 * 25 24 23 27 27 C 1.38232 * 120.00234 * 359.97438 * 26 25 24 28 28 C 1.54062 * 112.49563 * 94.15875 * 7 6 5 29 29 C 1.50470 * 109.63060 * 120.48955 * 2 1 3 30 30 H 1.08998 * 109.46859 * 180.48044 * 1 2 3 31 31 H 1.09003 * 109.46492 * 300.47588 * 1 2 3 32 32 H 1.08989 * 109.47384 * 60.47808 * 1 2 3 33 33 H 1.08998 * 108.90035 * 39.55641 * 4 2 1 34 34 H 1.09006 * 108.89685 * 281.05553 * 4 2 1 35 35 H 1.08991 * 108.89459 * 301.18297 * 5 4 2 36 36 H 1.09003 * 108.89126 * 182.68910 * 5 4 2 37 37 H 1.09003 * 109.62569 * 160.29127 * 6 5 4 38 38 H 1.08993 * 109.63079 * 39.70925 * 6 5 4 39 39 H 0.97004 * 120.00313 * 265.00484 * 9 7 6 40 40 H 0.97004 * 120.00298 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.99681 * 359.97438 * 23 22 12 42 42 H 1.07998 * 119.99995 * 180.27216 * 24 23 22 43 43 H 1.08005 * 119.99949 * 179.83509 * 25 24 23 44 44 H 1.08006 * 120.00132 * 180.02562 * 26 25 24 45 45 H 1.08003 * 119.99955 * 179.97438 * 27 26 25 46 46 H 1.08998 * 108.81813 * 79.14615 * 28 7 6 47 47 H 1.09003 * 108.81102 * 197.42262 * 28 7 6 48 48 H 1.09001 * 108.87754 * 334.62982 * 29 2 1 49 49 H 1.08994 * 108.88078 * 93.07730 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0256 0.0000 4 6 2.0480 -0.7369 -1.2521 5 6 3.4276 -0.3953 -1.5657 6 6 4.4028 -0.7946 -0.4393 7 6 4.3397 0.2515 0.6405 8 1 4.0335 1.1986 0.1964 9 7 5.6739 0.4116 1.2239 10 6 6.5677 1.2379 0.6452 11 8 6.2657 1.8528 -0.3556 12 6 7.9400 1.4031 1.2456 13 1 7.8482 1.7848 2.2624 14 6 8.6409 0.0692 1.2713 15 1 9.0290 -0.3190 2.2013 16 6 8.7866 -0.6555 0.1075 17 7 8.3489 -0.1652 -1.0317 18 14 9.6057 -2.3339 0.1486 19 1 8.5779 -3.3808 0.3786 20 1 10.2861 -2.5845 -1.1473 21 1 10.6042 -2.3706 1.2472 22 6 8.7387 2.3736 0.4142 23 6 10.0352 2.0654 0.0470 24 6 10.7662 2.9538 -0.7194 25 6 10.2038 4.1544 -1.1107 26 6 8.9091 4.4649 -0.7390 27 6 8.1766 3.5746 0.0235 28 6 3.3470 -0.1160 1.7599 29 6 2.0356 -0.7191 1.2213 30 1 -0.3633 -1.0276 0.0086 31 1 -0.3632 0.5212 0.8857 32 1 -0.3633 0.5063 -0.8941 33 1 1.4177 -0.4750 -2.1019 34 1 1.9803 -1.8115 -1.0826 35 1 3.4969 0.6803 -1.7276 36 1 3.7185 -0.9079 -2.4826 37 1 5.4166 -0.8511 -0.8356 38 1 4.1125 -1.7619 -0.0294 39 1 5.9142 -0.0772 2.0266 40 1 8.4517 -0.6749 -1.8506 41 1 10.4759 1.1292 0.3562 42 1 11.7776 2.7111 -1.0100 43 1 10.7759 4.8497 -1.7072 44 1 8.4696 5.4028 -1.0451 45 1 7.1651 3.8174 0.3143 46 1 3.8192 -0.8389 2.4252 47 1 3.1124 0.7826 2.3306 48 1 1.2763 -0.6657 2.0015 49 1 2.2062 -1.7656 0.9690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435929167.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:51 Heat of formation + Delta-G solvation = -50.054830 kcal Electronic energy + Delta-G solvation = -27699.890619 eV Core-core repulsion = 24203.944932 eV Total energy + Delta-G solvation = -3495.945687 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01837 -39.99767 -38.76880 -35.64736 -35.42542 -33.65919 -32.65103 -31.94060 -31.33910 -29.10184 -27.98390 -25.95864 -25.16314 -23.88500 -22.94638 -22.19653 -21.48722 -20.79895 -20.14763 -18.58517 -17.50390 -17.04828 -16.83160 -16.68356 -16.10593 -15.80952 -15.45687 -15.35316 -15.26132 -14.83105 -14.51739 -14.23235 -14.09006 -13.92422 -13.88576 -13.63740 -13.56042 -13.24144 -13.03728 -12.87675 -12.75712 -12.53271 -12.31200 -12.23459 -12.01535 -11.75766 -11.63549 -11.49244 -11.40511 -11.28665 -11.17480 -11.12831 -11.02034 -10.60718 -10.05978 -9.54112 -9.36334 -9.08058 -8.03947 -6.23280 0.89075 0.94269 1.40050 1.45242 1.51734 2.37249 2.50293 2.84604 3.23173 3.37215 3.64105 3.78480 4.03060 4.18230 4.25330 4.26831 4.34523 4.35870 4.41159 4.49634 4.51074 4.61743 4.67320 4.73829 4.80261 4.85611 4.90862 5.01906 5.04168 5.06326 5.10721 5.16472 5.17306 5.20072 5.24595 5.29037 5.40959 5.47074 5.48115 5.50762 5.56544 5.57768 5.64203 5.73012 5.89843 5.95473 6.00139 6.14347 6.44845 6.54340 6.78943 7.18368 7.45039 8.03516 8.94244 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.014172 B = 0.004603 C = 0.003906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.223693 B = 6081.521053 C = 7166.321531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 H 0.055 0.945 4 C -0.105 4.105 5 C -0.106 4.106 6 C -0.117 4.117 7 C 0.157 3.843 8 H 0.050 0.950 9 N -0.728 5.728 10 C 0.551 3.449 11 O -0.583 6.583 12 C 0.044 3.956 13 H 0.064 0.936 14 C -0.533 4.533 15 H 0.069 0.931 16 C 0.045 3.955 17 N -0.868 5.868 18 Si 0.935 3.065 19 H -0.279 1.279 20 H -0.296 1.296 21 H -0.262 1.262 22 C -0.033 4.033 23 C -0.088 4.088 24 C -0.152 4.152 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.118 4.118 28 C -0.114 4.114 29 C -0.103 4.103 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.038 0.962 36 H 0.047 0.953 37 H 0.031 0.969 38 H 0.071 0.929 39 H 0.400 0.600 40 H 0.253 0.747 41 H 0.112 0.888 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.128 0.872 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.066 0.934 48 H 0.082 0.918 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.731 -0.511 4.381 11.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.112 4.112 3 H 0.073 0.927 4 C -0.142 4.142 5 C -0.144 4.144 6 C -0.155 4.155 7 C 0.053 3.947 8 H 0.068 0.932 9 N -0.380 5.380 10 C 0.340 3.660 11 O -0.463 6.463 12 C 0.023 3.977 13 H 0.082 0.918 14 C -0.571 4.571 15 H 0.087 0.913 16 C -0.160 4.160 17 N -0.502 5.502 18 Si 0.762 3.238 19 H -0.205 1.205 20 H -0.222 1.222 21 H -0.187 1.187 22 C -0.034 4.034 23 C -0.106 4.106 24 C -0.170 4.170 25 C -0.160 4.160 26 C -0.165 4.165 27 C -0.136 4.136 28 C -0.152 4.152 29 C -0.141 4.141 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.235 0.765 40 H 0.062 0.938 41 H 0.130 0.870 42 H 0.144 0.856 43 H 0.155 0.845 44 H 0.146 0.854 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.085 0.915 48 H 0.101 0.899 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.971 -0.102 3.468 11.506 hybrid contribution 0.904 -1.230 -0.296 1.555 sum -10.067 -1.332 3.172 10.639 Atomic orbital electron populations 1.21829 0.93480 1.02319 1.01971 1.20927 0.96521 0.99109 0.94610 0.92663 1.20522 0.94582 1.00745 0.98381 1.20306 0.96199 1.00216 0.97716 1.21655 0.98419 0.99120 0.96330 1.20621 0.82606 0.97670 0.93832 0.93166 1.45982 1.13315 1.47432 1.31229 1.20879 0.85938 0.76422 0.82735 1.90493 1.79585 1.49615 1.26594 1.18023 0.89911 0.95310 0.94434 0.91785 1.20844 1.39203 1.02299 0.94785 0.91275 1.25500 0.95432 0.99899 0.95192 1.70246 1.44209 1.37301 0.98432 0.85903 0.79077 0.81642 0.77188 1.20456 1.22250 1.18662 1.19934 0.94122 0.92697 0.96610 1.21128 0.94592 0.98067 0.96804 1.21311 1.00350 0.95221 1.00142 1.21164 0.95714 0.97503 1.01644 1.21183 0.95277 0.99913 1.00106 1.21025 0.98227 0.94744 0.99616 1.22110 0.95065 1.01613 0.96452 1.21342 0.95467 0.99692 0.97630 0.91797 0.91944 0.92750 0.91651 0.91359 0.94363 0.93457 0.94973 0.91070 0.76546 0.93761 0.87041 0.85636 0.84478 0.85372 0.88417 0.90831 0.91488 0.89944 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 8.87 71.98 0.64 -1.61 16 2 C -0.09 -1.99 2.40 -11.19 -0.03 -2.01 16 3 H 0.05 1.40 6.97 -2.39 -0.02 1.38 16 4 C -0.11 -2.49 4.68 28.74 0.13 -2.35 16 5 C -0.11 -3.40 5.26 28.74 0.15 -3.25 16 6 C -0.12 -4.20 5.27 30.20 0.16 -4.04 16 7 C 0.16 5.44 1.98 44.53 0.09 5.52 16 8 H 0.05 2.00 5.97 -2.39 -0.01 1.98 16 9 N -0.73 -28.97 4.82 -444.74 -2.14 -31.11 16 10 C 0.55 26.48 5.24 87.66 0.46 26.94 16 11 O -0.58 -31.92 13.57 -3.01 -0.04 -31.97 16 12 C 0.04 2.13 2.78 -13.03 -0.04 2.10 16 13 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 14 C -0.53 -26.14 7.11 25.60 0.18 -25.95 16 15 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 16 C 0.04 2.26 4.00 84.65 0.34 2.60 16 17 N -0.87 -48.19 10.90 21.45 0.23 -47.96 16 18 Si 0.94 41.02 29.54 68.60 2.03 43.04 16 19 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 20 H -0.30 -13.41 7.11 99.48 0.71 -12.70 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 22 C -0.03 -1.60 4.51 -19.87 -0.09 -1.69 16 23 C -0.09 -4.18 8.20 22.27 0.18 -4.00 16 24 C -0.15 -6.30 10.05 22.27 0.22 -6.07 16 25 C -0.14 -5.43 10.05 22.27 0.22 -5.20 16 26 C -0.15 -5.95 10.05 22.27 0.22 -5.73 16 27 C -0.12 -5.48 8.21 22.27 0.18 -5.30 16 28 C -0.11 -2.82 5.40 31.32 0.17 -2.65 16 29 C -0.10 -2.07 4.89 30.14 0.15 -1.93 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.90 8.11 -2.39 -0.02 0.88 16 32 H 0.05 0.87 8.13 -2.39 -0.02 0.85 16 33 H 0.06 1.41 7.97 -2.39 -0.02 1.39 16 34 H 0.07 1.47 7.47 -2.38 -0.02 1.46 16 35 H 0.04 1.39 7.47 -2.39 -0.02 1.37 16 36 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.03 1.49 7.79 -2.39 -0.02 1.47 16 38 H 0.07 2.25 6.98 -2.39 -0.02 2.24 16 39 H 0.40 14.37 8.34 -92.71 -0.77 13.60 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.11 5.54 6.04 -2.91 -0.02 5.52 16 42 H 0.13 4.45 8.06 -2.91 -0.02 4.42 16 43 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 44 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 45 H 0.10 4.60 7.01 -2.91 -0.02 4.58 16 46 H 0.07 1.68 7.92 -2.39 -0.02 1.66 16 47 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 48 H 0.08 1.32 7.68 -2.39 -0.02 1.30 16 49 H 0.06 1.28 6.63 -2.39 -0.02 1.27 16 Total: -1.00 -63.35 372.46 3.58 -59.77 By element: Atomic # 1 Polarization: 42.69 SS G_CDS: 0.16 Total: 42.84 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 3.35 Total: -34.62 kcal Atomic # 7 Polarization: -77.16 SS G_CDS: -1.91 Total: -79.07 kcal Atomic # 8 Polarization: -31.92 SS G_CDS: -0.04 Total: -31.97 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.04 kcal Total: -63.35 3.58 -59.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435929167.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.714 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds