Wall clock time and date at job start Tue Mar 31 2020 11:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09003 * 108.44874 * 52.68998 * 3 2 1 5 5 C 1.52568 * 108.51584 * 170.23401 * 3 2 1 6 6 C 1.50882 * 109.36009 * 206.27531 * 5 3 2 7 7 C 1.53948 * 110.09489 * 268.11013 * 6 5 3 8 8 N 1.47599 * 112.14039 * 40.55663 * 7 6 5 9 9 C 1.34780 * 118.64638 * 222.13236 * 8 7 6 10 10 O 1.21276 * 119.99954 * 180.02562 * 9 8 7 11 11 C 1.50701 * 119.99947 * 0.02562 * 9 8 7 12 12 H 1.09000 * 109.46703 * 59.99491 * 11 9 8 13 13 C 1.50703 * 109.46948 * 299.99790 * 11 9 8 14 14 H 1.07996 * 120.00090 * 125.77092 * 13 11 9 15 15 C 1.37875 * 119.99791 * 305.76866 * 13 11 9 16 16 N 1.31510 * 119.99948 * 5.09697 * 15 13 11 17 17 Si 1.86799 * 119.99927 * 185.09223 * 15 13 11 18 18 H 1.48500 * 109.46695 * 60.00223 * 17 15 13 19 19 H 1.48495 * 109.47367 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47386 * 300.00466 * 17 15 13 21 21 C 1.50700 * 109.47299 * 179.97438 * 11 9 8 22 22 C 1.38237 * 120.00058 * 294.80952 * 21 11 9 23 23 C 1.38226 * 119.99910 * 179.74249 * 22 21 11 24 24 C 1.38241 * 120.00379 * 0.52579 * 23 22 21 25 25 C 1.38236 * 119.99565 * 359.74782 * 24 23 22 26 26 C 1.38230 * 119.99970 * 115.07779 * 21 11 9 27 27 C 1.44273 * 122.59878 * 42.08477 * 8 7 6 28 28 C 1.47091 * 108.51687 * 295.00195 * 3 2 1 29 29 H 1.08995 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47214 * 300.00280 * 1 2 3 31 31 H 1.08999 * 109.46796 * 59.99818 * 1 2 3 32 32 H 1.09000 * 109.47204 * 240.00277 * 2 1 3 33 33 H 1.09004 * 109.47203 * 119.99960 * 2 1 3 34 34 H 1.09007 * 109.48700 * 326.23416 * 5 3 2 35 35 H 1.08990 * 109.49150 * 86.30491 * 5 3 2 36 36 H 1.09008 * 109.36784 * 28.29428 * 6 5 3 37 37 H 1.08995 * 109.37139 * 147.91069 * 6 5 3 38 38 H 1.08997 * 108.95203 * 161.25006 * 7 6 5 39 39 H 1.09005 * 108.94193 * 279.87931 * 7 6 5 40 40 H 0.97005 * 119.99853 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99676 * 359.97438 * 22 21 11 42 42 H 1.08005 * 120.00293 * 180.29718 * 23 22 21 43 43 H 1.07990 * 120.00360 * 179.76560 * 24 23 22 44 44 H 1.07998 * 120.00027 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00054 * 0.02562 * 26 21 11 46 46 H 1.09001 * 109.19376 * 149.16147 * 27 8 7 47 47 H 1.09001 * 109.54114 * 29.34806 * 27 8 7 48 48 H 1.09001 * 109.32563 * 296.20438 * 28 3 2 49 49 H 1.08999 * 109.32677 * 55.85716 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5641 1.9766 0.8224 5 6 3.5457 1.4239 0.2454 6 6 3.9654 2.7278 0.8781 7 6 4.3784 3.7351 -0.2103 8 7 3.4839 3.6846 -1.3833 9 6 4.0289 3.7446 -2.6145 10 8 3.3167 3.7056 -3.5954 11 6 5.5231 3.8603 -2.7724 12 1 6.0048 2.9972 -2.3129 13 6 6.0032 5.1206 -2.0999 14 1 6.7866 5.0721 -1.3582 15 6 5.4422 6.3356 -2.4317 16 7 4.4215 6.3844 -3.2594 17 14 6.1319 7.9123 -1.7053 18 1 7.5569 8.0560 -2.0976 19 1 5.3581 9.0724 -2.2156 20 1 6.0289 7.8618 -0.2247 21 6 5.8713 3.9083 -4.2378 22 6 5.6259 2.8117 -5.0429 23 6 5.9403 2.8577 -6.3881 24 6 6.5102 3.9964 -6.9262 25 6 6.7609 5.0910 -6.1200 26 6 6.4412 5.0470 -4.7758 27 6 2.0505 3.5726 -1.2634 28 6 1.6400 2.0794 -1.2641 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7953 0.5990 0.9128 35 1 4.0672 1.2954 -0.7030 36 1 3.1328 3.1361 1.4511 37 1 4.8087 2.5508 1.5456 38 1 4.3543 4.7404 0.2102 39 1 5.3959 3.5118 -0.5314 40 1 4.0270 7.2393 -3.4931 41 1 5.1850 1.9204 -4.6215 42 1 5.7442 2.0027 -7.0181 43 1 6.7594 4.0310 -7.9764 44 1 7.2065 5.9805 -6.5403 45 1 6.6373 5.9020 -4.1459 46 1 1.5798 4.0788 -2.1062 47 1 1.7250 4.0381 -0.3331 48 1 2.1293 1.5710 -2.0948 49 1 0.5589 2.0025 -1.3804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001456269892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:08 Heat of formation + Delta-G solvation = -20.147762 kcal Electronic energy + Delta-G solvation = -28231.364984 eV Core-core repulsion = 24736.716165 eV Total energy + Delta-G solvation = -3494.648820 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.67152 -38.29073 -36.96640 -34.43762 -33.75079 -32.14043 -30.96097 -30.32959 -29.63322 -27.51006 -26.30750 -24.55033 -23.93279 -22.38248 -21.23488 -20.92837 -20.11869 -19.78092 -17.82842 -16.99279 -15.79659 -15.52384 -15.31419 -14.97687 -14.61883 -14.40726 -14.24740 -13.94749 -13.68659 -13.17345 -13.07540 -12.95457 -12.57155 -12.41080 -12.20846 -12.17339 -12.04550 -11.75652 -11.59075 -11.40588 -11.09274 -10.93759 -10.86353 -10.76583 -10.65890 -10.49479 -10.22914 -10.19067 -10.08103 -10.04390 -9.87690 -9.68022 -9.36582 -8.59232 -8.20271 -7.75337 -7.44788 -7.37315 -6.15099 -4.27610 2.51288 2.60934 3.19499 3.27746 3.28655 4.17074 4.22767 4.40569 4.82135 4.98719 5.00075 5.02381 5.09412 5.32406 5.50804 5.52593 5.60853 5.63487 5.80733 5.83787 5.86640 5.94180 5.98918 6.01828 6.03795 6.11683 6.13763 6.18426 6.25650 6.33693 6.35599 6.42212 6.53200 6.54493 6.62964 6.65826 6.71642 6.76285 6.82835 6.85492 6.91986 7.10592 7.23435 7.51338 7.62774 7.70069 7.81296 7.86635 8.15802 8.27511 8.59627 8.80076 9.34863 9.82214 10.85850 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.005367 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.453349 B = 5215.799104 C = 6550.896336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.081 4.081 4 H 0.060 0.940 5 C -0.107 4.107 6 C -0.136 4.136 7 C 0.128 3.872 8 N -0.606 5.606 9 C 0.557 3.443 10 O -0.548 6.548 11 C 0.055 3.945 12 H 0.053 0.947 13 C -0.534 4.534 14 H 0.067 0.933 15 C 0.072 3.928 16 N -0.844 5.844 17 Si 0.883 3.117 18 H -0.273 1.273 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.016 4.016 22 C -0.114 4.114 23 C -0.142 4.142 24 C -0.144 4.144 25 C -0.149 4.149 26 C -0.060 4.060 27 C 0.127 3.873 28 C -0.130 4.130 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.266 0.734 41 H 0.100 0.900 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.136 0.864 46 H 0.074 0.926 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.001 -8.174 6.226 10.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.099 4.099 4 H 0.079 0.921 5 C -0.145 4.145 6 C -0.175 4.175 7 C 0.004 3.996 8 N -0.340 5.340 9 C 0.348 3.652 10 O -0.424 6.424 11 C 0.034 3.966 12 H 0.071 0.929 13 C -0.572 4.572 14 H 0.085 0.915 15 C -0.135 4.135 16 N -0.477 5.477 17 Si 0.709 3.291 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.200 1.200 21 C -0.017 4.017 22 C -0.133 4.133 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.167 4.167 26 C -0.078 4.078 27 C 0.003 3.997 28 C -0.169 4.169 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.154 0.846 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.549 -8.041 5.600 10.125 hybrid contribution 0.084 1.122 0.385 1.190 sum -2.465 -6.919 5.985 9.474 Atomic orbital electron populations 1.21856 0.96331 1.01041 1.01900 1.21724 0.95577 0.97177 1.01495 1.20105 0.95850 0.95370 0.98567 0.92145 1.21092 0.95404 0.96942 1.01050 1.21877 1.01090 0.96130 0.98385 1.21807 0.94747 0.97483 0.85538 1.47235 1.04820 1.75360 1.06554 1.20852 0.91265 0.71906 0.81227 1.90516 1.63815 1.49919 1.38197 1.17948 0.90010 0.97886 0.90765 0.92933 1.20678 1.22017 0.89917 1.24593 0.91486 1.25008 0.94666 0.99079 0.94711 1.70059 1.20036 1.26030 1.31615 0.86795 0.79448 0.83099 0.79709 1.19835 1.21236 1.20004 1.19865 0.93639 0.92133 0.96075 1.20869 1.00083 0.98627 0.93698 1.20771 1.02239 0.97759 0.95298 1.20785 1.02549 0.94545 0.98354 1.21069 1.02918 0.97646 0.95050 1.21429 0.94497 0.98324 0.93517 1.21008 0.83040 0.94465 1.01227 1.21327 1.00501 0.97591 0.97472 0.93313 0.93007 0.92315 0.92250 0.92511 0.92675 0.91556 0.92514 0.91505 0.92823 0.88883 0.92340 0.88170 0.88046 0.88145 0.88027 0.84599 0.90747 0.92652 0.91867 0.91776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.62 37.16 0.36 -1.22 16 2 C -0.12 -1.37 5.27 -26.73 -0.14 -1.51 16 3 C -0.08 -1.04 1.67 -93.68 -0.16 -1.19 16 4 H 0.06 0.76 7.32 -51.93 -0.38 0.38 16 5 C -0.11 -1.42 4.93 -28.02 -0.14 -1.56 16 6 C -0.14 -1.84 5.70 -27.30 -0.16 -2.00 16 7 C 0.13 2.22 4.93 -2.95 -0.01 2.21 16 8 N -0.61 -12.11 2.24 -172.77 -0.39 -12.50 16 9 C 0.56 13.14 5.24 -10.98 -0.06 13.08 16 10 O -0.55 -14.79 14.60 5.56 0.08 -14.71 16 11 C 0.06 1.28 1.86 -94.07 -0.18 1.11 16 12 H 0.05 1.14 7.41 -51.93 -0.38 0.75 16 13 C -0.53 -12.67 5.48 -34.44 -0.19 -12.86 16 14 H 0.07 1.54 7.78 -52.49 -0.41 1.13 16 15 C 0.07 1.78 3.19 -17.82 -0.06 1.72 16 16 N -0.84 -22.61 10.42 55.43 0.58 -22.04 16 17 Si 0.88 19.42 29.54 -169.99 -5.02 14.40 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 C -0.02 -0.39 4.50 -104.63 -0.47 -0.86 16 22 C -0.11 -2.54 8.75 -39.59 -0.35 -2.89 16 23 C -0.14 -2.88 10.05 -39.59 -0.40 -3.28 16 24 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 25 C -0.15 -3.17 10.05 -39.58 -0.40 -3.56 16 26 C -0.06 -1.43 8.00 -39.58 -0.32 -1.74 16 27 C 0.13 2.31 5.36 -4.25 -0.02 2.28 16 28 C -0.13 -1.98 4.83 -28.58 -0.14 -2.12 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.63 6.39 -51.93 -0.33 0.30 16 32 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 33 H 0.06 0.59 7.82 -51.93 -0.41 0.18 16 34 H 0.05 0.64 7.64 -51.93 -0.40 0.24 16 35 H 0.07 1.02 7.48 -51.93 -0.39 0.63 16 36 H 0.06 0.73 7.31 -51.92 -0.38 0.35 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.09 1.69 5.11 -51.93 -0.27 1.43 16 40 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 42 H 0.10 1.75 8.06 -52.48 -0.42 1.33 16 43 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 45 H 0.14 3.40 4.97 -52.48 -0.26 3.14 16 46 H 0.07 1.57 7.29 -51.93 -0.38 1.19 16 47 H 0.06 0.91 8.06 -51.93 -0.42 0.49 16 48 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 49 H 0.06 0.89 6.14 -51.93 -0.32 0.57 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -28.34 367.69 -10.50 -38.84 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.08 Total: 8.11 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.21 Total: -17.64 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.19 Total: -34.54 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.02 Total: 14.40 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.34 -10.50 -38.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456269892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.696 kcal (2) G-P(sol) polarization free energy of solvation -28.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds