Wall clock time and date at job start Tue Mar 31 2020 11:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09003 * 108.44874 * 52.68998 * 3 2 1 5 5 C 1.52568 * 108.51584 * 170.23401 * 3 2 1 6 6 C 1.50882 * 109.36009 * 206.27531 * 5 3 2 7 7 C 1.53948 * 110.09489 * 268.11013 * 6 5 3 8 8 N 1.47599 * 112.14039 * 40.55663 * 7 6 5 9 9 C 1.34780 * 118.64638 * 222.13236 * 8 7 6 10 10 O 1.21276 * 119.99954 * 180.02562 * 9 8 7 11 11 C 1.50701 * 119.99947 * 0.02562 * 9 8 7 12 12 H 1.09000 * 109.46703 * 59.99491 * 11 9 8 13 13 C 1.50703 * 109.46948 * 299.99790 * 11 9 8 14 14 H 1.07996 * 120.00090 * 125.77092 * 13 11 9 15 15 C 1.37875 * 119.99791 * 305.76866 * 13 11 9 16 16 N 1.31510 * 119.99948 * 5.09697 * 15 13 11 17 17 Si 1.86799 * 119.99927 * 185.09223 * 15 13 11 18 18 H 1.48500 * 109.46695 * 60.00223 * 17 15 13 19 19 H 1.48495 * 109.47367 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47386 * 300.00466 * 17 15 13 21 21 C 1.50700 * 109.47299 * 179.97438 * 11 9 8 22 22 C 1.38237 * 120.00058 * 294.80952 * 21 11 9 23 23 C 1.38226 * 119.99910 * 179.74249 * 22 21 11 24 24 C 1.38241 * 120.00379 * 0.52579 * 23 22 21 25 25 C 1.38236 * 119.99565 * 359.74782 * 24 23 22 26 26 C 1.38230 * 119.99970 * 115.07779 * 21 11 9 27 27 C 1.44273 * 122.59878 * 42.08477 * 8 7 6 28 28 C 1.47091 * 108.51687 * 295.00195 * 3 2 1 29 29 H 1.08995 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47214 * 300.00280 * 1 2 3 31 31 H 1.08999 * 109.46796 * 59.99818 * 1 2 3 32 32 H 1.09000 * 109.47204 * 240.00277 * 2 1 3 33 33 H 1.09004 * 109.47203 * 119.99960 * 2 1 3 34 34 H 1.09007 * 109.48700 * 326.23416 * 5 3 2 35 35 H 1.08990 * 109.49150 * 86.30491 * 5 3 2 36 36 H 1.09008 * 109.36784 * 28.29428 * 6 5 3 37 37 H 1.08995 * 109.37139 * 147.91069 * 6 5 3 38 38 H 1.08997 * 108.95203 * 161.25006 * 7 6 5 39 39 H 1.09005 * 108.94193 * 279.87931 * 7 6 5 40 40 H 0.97005 * 119.99853 * 180.02562 * 16 15 13 41 41 H 1.08001 * 119.99676 * 359.97438 * 22 21 11 42 42 H 1.08005 * 120.00293 * 180.29718 * 23 22 21 43 43 H 1.07990 * 120.00360 * 179.76560 * 24 23 22 44 44 H 1.07998 * 120.00027 * 179.97438 * 25 24 23 45 45 H 1.08003 * 120.00054 * 0.02562 * 26 21 11 46 46 H 1.09001 * 109.19376 * 149.16147 * 27 8 7 47 47 H 1.09001 * 109.54114 * 29.34806 * 27 8 7 48 48 H 1.09001 * 109.32563 * 296.20438 * 28 3 2 49 49 H 1.08999 * 109.32677 * 55.85716 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5641 1.9766 0.8224 5 6 3.5457 1.4239 0.2454 6 6 3.9654 2.7278 0.8781 7 6 4.3784 3.7351 -0.2103 8 7 3.4839 3.6846 -1.3833 9 6 4.0289 3.7446 -2.6145 10 8 3.3167 3.7056 -3.5954 11 6 5.5231 3.8603 -2.7724 12 1 6.0048 2.9972 -2.3129 13 6 6.0032 5.1206 -2.0999 14 1 6.7866 5.0721 -1.3582 15 6 5.4422 6.3356 -2.4317 16 7 4.4215 6.3844 -3.2594 17 14 6.1319 7.9123 -1.7053 18 1 7.5569 8.0560 -2.0976 19 1 5.3581 9.0724 -2.2156 20 1 6.0289 7.8618 -0.2247 21 6 5.8713 3.9083 -4.2378 22 6 5.6259 2.8117 -5.0429 23 6 5.9403 2.8577 -6.3881 24 6 6.5102 3.9964 -6.9262 25 6 6.7609 5.0910 -6.1200 26 6 6.4412 5.0470 -4.7758 27 6 2.0505 3.5726 -1.2634 28 6 1.6400 2.0794 -1.2641 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.7953 0.5990 0.9128 35 1 4.0672 1.2954 -0.7030 36 1 3.1328 3.1361 1.4511 37 1 4.8087 2.5508 1.5456 38 1 4.3543 4.7404 0.2102 39 1 5.3959 3.5118 -0.5314 40 1 4.0270 7.2393 -3.4931 41 1 5.1850 1.9204 -4.6215 42 1 5.7442 2.0027 -7.0181 43 1 6.7594 4.0310 -7.9764 44 1 7.2065 5.9805 -6.5403 45 1 6.6373 5.9020 -4.1459 46 1 1.5798 4.0788 -2.1062 47 1 1.7250 4.0381 -0.3331 48 1 2.1293 1.5710 -2.0948 49 1 0.5589 2.0025 -1.3804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001456269892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:07 Heat of formation + Delta-G solvation = -32.429363 kcal Electronic energy + Delta-G solvation = -28231.897554 eV Core-core repulsion = 24736.716165 eV Total energy + Delta-G solvation = -3495.181390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23794 -39.82039 -38.49937 -35.94959 -35.47898 -33.48242 -32.70109 -31.55705 -31.33120 -29.15509 -27.69174 -25.96257 -25.59242 -23.68897 -22.92911 -22.24597 -21.67879 -20.91060 -19.49769 -18.75756 -17.40602 -17.13256 -16.98047 -16.54327 -16.17017 -15.65516 -15.49514 -15.44947 -15.27777 -14.68130 -14.53743 -14.25337 -14.05378 -13.96297 -13.78281 -13.59549 -13.44899 -13.07207 -13.02383 -12.86908 -12.66426 -12.58323 -12.37156 -12.21998 -12.05609 -11.80391 -11.74956 -11.62900 -11.42304 -11.33142 -11.18197 -11.14830 -10.98150 -10.49660 -10.06653 -9.44995 -9.10085 -9.07653 -8.06986 -6.22446 0.82105 0.92042 1.42132 1.45637 1.50689 2.36547 2.50544 2.70969 3.19915 3.30711 3.75048 3.91625 3.98466 4.19492 4.28210 4.31395 4.33762 4.36367 4.48051 4.53726 4.59021 4.60872 4.67479 4.70541 4.76998 4.87498 4.90831 4.96065 4.98454 5.06460 5.13916 5.15238 5.16133 5.22580 5.26230 5.30594 5.36203 5.41960 5.46030 5.49080 5.55305 5.57083 5.64881 5.70235 5.84830 5.94209 5.98392 6.30240 6.41259 6.50843 6.76006 7.03246 7.42167 8.03068 8.92782 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013315 B = 0.005367 C = 0.004273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.453349 B = 5215.799104 C = 6550.896336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.080 4.080 4 H 0.075 0.925 5 C -0.105 4.105 6 C -0.125 4.125 7 C 0.125 3.875 8 N -0.603 5.603 9 C 0.555 3.445 10 O -0.592 6.592 11 C 0.050 3.950 12 H 0.059 0.941 13 C -0.525 4.525 14 H 0.073 0.927 15 C 0.040 3.960 16 N -0.877 5.877 17 Si 0.934 3.066 18 H -0.268 1.268 19 H -0.298 1.298 20 H -0.265 1.265 21 C -0.040 4.040 22 C -0.131 4.131 23 C -0.142 4.142 24 C -0.140 4.140 25 C -0.156 4.156 26 C -0.086 4.086 27 C 0.125 3.875 28 C -0.114 4.114 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.048 0.952 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.081 0.919 40 H 0.256 0.744 41 H 0.100 0.900 42 H 0.135 0.865 43 H 0.140 0.860 44 H 0.123 0.877 45 H 0.117 0.883 46 H 0.036 0.964 47 H 0.076 0.924 48 H 0.033 0.967 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.715 -9.391 7.505 12.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.098 4.098 4 H 0.093 0.907 5 C -0.143 4.143 6 C -0.163 4.163 7 C 0.002 3.998 8 N -0.336 5.336 9 C 0.346 3.654 10 O -0.472 6.472 11 C 0.028 3.972 12 H 0.077 0.923 13 C -0.563 4.563 14 H 0.091 0.909 15 C -0.163 4.163 16 N -0.512 5.512 17 Si 0.760 3.240 18 H -0.193 1.193 19 H -0.224 1.224 20 H -0.190 1.190 21 C -0.041 4.041 22 C -0.150 4.150 23 C -0.159 4.159 24 C -0.158 4.158 25 C -0.174 4.174 26 C -0.104 4.104 27 C 0.001 3.999 28 C -0.153 4.153 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.059 0.941 39 H 0.100 0.900 40 H 0.065 0.935 41 H 0.118 0.882 42 H 0.153 0.847 43 H 0.158 0.842 44 H 0.141 0.859 45 H 0.135 0.865 46 H 0.054 0.946 47 H 0.094 0.906 48 H 0.052 0.948 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.241 -9.272 6.937 11.795 hybrid contribution 0.018 1.468 -0.044 1.468 sum -2.223 -7.805 6.894 10.648 Atomic orbital electron populations 1.21846 0.95495 1.01859 1.01841 1.21672 0.96283 0.95720 1.01827 1.20077 0.95903 0.96577 0.97233 0.90713 1.21092 0.95257 0.97676 1.00263 1.21817 1.02563 0.94895 0.97050 1.21910 0.93963 0.98298 0.85614 1.47289 1.05868 1.74041 1.06364 1.20899 0.91247 0.71482 0.81779 1.90472 1.64603 1.52231 1.39888 1.18014 0.90052 0.97948 0.91141 0.92276 1.20845 1.21351 0.90133 1.23942 0.90930 1.25496 0.94639 1.01353 0.94838 1.70235 1.21768 1.25597 1.33632 0.85972 0.78771 0.79842 0.79394 1.19292 1.22412 1.19012 1.20008 0.94597 0.92967 0.96555 1.21016 1.00710 0.98327 0.94897 1.21181 1.00932 0.99119 0.94707 1.21202 1.01083 0.93472 1.00049 1.21372 1.02573 0.99167 0.94261 1.21391 0.96360 0.97885 0.94808 1.21113 0.81813 0.96518 1.00505 1.21191 1.01042 0.95046 0.98010 0.92142 0.92059 0.93341 0.93355 0.90727 0.90029 0.94249 0.91154 0.89064 0.94077 0.90028 0.93508 0.88184 0.84750 0.84242 0.85899 0.86544 0.94555 0.90557 0.94808 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.62 71.98 0.69 -2.06 16 2 C -0.12 -2.36 5.27 30.59 0.16 -2.19 16 3 C -0.08 -1.89 1.67 -12.78 -0.02 -1.91 16 4 H 0.07 1.62 7.32 -2.39 -0.02 1.60 16 5 C -0.11 -2.57 4.93 29.76 0.15 -2.43 16 6 C -0.13 -3.09 5.70 30.23 0.17 -2.91 16 7 C 0.12 4.32 4.93 86.49 0.43 4.75 16 8 N -0.60 -24.81 2.24 -818.91 -1.83 -26.64 16 9 C 0.55 27.33 5.24 87.66 0.46 27.79 16 10 O -0.59 -33.67 14.60 -3.02 -0.04 -33.71 16 11 C 0.05 2.39 1.86 -13.03 -0.02 2.37 16 12 H 0.06 2.66 7.41 -2.39 -0.02 2.65 16 13 C -0.52 -25.47 5.48 25.60 0.14 -25.33 16 14 H 0.07 3.36 7.78 -2.91 -0.02 3.34 16 15 C 0.04 2.02 3.19 84.65 0.27 2.29 16 16 N -0.88 -48.92 10.42 21.45 0.22 -48.70 16 17 Si 0.93 40.51 29.54 68.60 2.03 42.53 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 19 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 21 C -0.04 -1.98 4.50 -19.87 -0.09 -2.07 16 22 C -0.13 -5.92 8.75 22.27 0.19 -5.73 16 23 C -0.14 -5.53 10.05 22.27 0.22 -5.31 16 24 C -0.14 -5.28 10.05 22.27 0.22 -5.05 16 25 C -0.16 -6.55 10.05 22.27 0.22 -6.32 16 26 C -0.09 -4.22 8.00 22.27 0.18 -4.04 16 27 C 0.12 4.63 5.36 87.43 0.47 5.10 16 28 C -0.11 -3.48 4.83 29.39 0.14 -3.34 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.96 6.39 -2.39 -0.02 0.95 16 32 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.07 1.26 7.82 -2.38 -0.02 1.25 16 34 H 0.08 1.60 7.64 -2.38 -0.02 1.58 16 35 H 0.04 1.19 7.48 -2.39 -0.02 1.17 16 36 H 0.07 1.58 7.31 -2.38 -0.02 1.57 16 37 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.08 3.00 5.11 -2.38 -0.01 2.99 16 40 H 0.26 14.26 8.31 -92.70 -0.77 13.49 16 41 H 0.10 4.38 8.06 -2.91 -0.02 4.35 16 42 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 43 H 0.14 4.13 8.06 -2.92 -0.02 4.11 16 44 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 45 H 0.12 6.04 4.97 -2.91 -0.01 6.03 16 46 H 0.04 1.61 7.29 -2.39 -0.02 1.60 16 47 H 0.08 2.47 8.06 -2.39 -0.02 2.45 16 48 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.08 2.14 6.14 -2.39 -0.01 2.13 16 Total: -1.00 -64.32 367.69 5.28 -59.04 By element: Atomic # 1 Polarization: 32.97 SS G_CDS: 0.92 Total: 33.88 kcal Atomic # 6 Polarization: -30.40 SS G_CDS: 3.99 Total: -26.41 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -1.61 Total: -75.33 kcal Atomic # 8 Polarization: -33.67 SS G_CDS: -0.04 Total: -33.71 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.53 kcal Total: -64.32 5.28 -59.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001456269892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.611 kcal (2) G-P(sol) polarization free energy of solvation -64.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds