Wall clock time and date at job start Tue Mar 31 2020 11:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46855 * 2 1 4 4 H 1.09000 * 109.46952 * 53.69401 * 3 2 1 5 5 N 1.46493 * 109.47043 * 293.69247 * 3 2 1 6 6 C 1.34775 * 120.00107 * 92.06812 * 5 3 2 7 7 O 1.21285 * 120.00100 * 5.39382 * 6 5 3 8 8 C 1.50699 * 120.00214 * 185.39552 * 6 5 3 9 9 H 1.08992 * 109.47272 * 305.54556 * 8 6 5 10 10 C 1.50698 * 109.47317 * 65.54868 * 8 6 5 11 11 H 1.08002 * 120.00117 * 54.66682 * 10 8 6 12 12 C 1.37879 * 119.99905 * 234.67112 * 10 8 6 13 13 N 1.31515 * 119.99673 * 173.94487 * 12 10 8 14 14 Si 1.86797 * 119.99954 * 353.94416 * 12 10 8 15 15 H 1.48494 * 109.47220 * 94.00019 * 14 12 10 16 16 H 1.48503 * 109.46878 * 213.99804 * 14 12 10 17 17 H 1.48504 * 109.47111 * 333.99613 * 14 12 10 18 18 C 1.50702 * 109.47062 * 185.54689 * 8 6 5 19 19 C 1.38237 * 120.00192 * 302.02550 * 18 8 6 20 20 C 1.38231 * 120.00185 * 179.78915 * 19 18 8 21 21 C 1.38234 * 119.99733 * 0.44127 * 20 19 18 22 22 C 1.38239 * 120.00368 * 359.81212 * 21 20 19 23 23 C 1.38230 * 120.00006 * 122.30224 * 18 8 6 24 24 C 1.53003 * 109.46924 * 173.69190 * 3 2 1 25 25 C 1.54260 * 110.03320 * 297.16813 * 24 3 2 26 26 C 1.54895 * 104.19368 * 217.10537 * 25 24 3 27 27 C 1.54885 * 102.74703 * 37.94466 * 26 25 24 28 28 C 1.53874 * 110.02938 * 180.02562 * 24 3 2 29 29 H 1.09010 * 109.46432 * 185.44731 * 1 2 3 30 30 H 1.09000 * 109.47197 * 305.44138 * 1 2 3 31 31 H 1.08999 * 109.47430 * 65.44962 * 1 2 3 32 32 H 1.09004 * 109.47408 * 240.00305 * 2 1 3 33 33 H 1.09003 * 109.47595 * 120.00096 * 2 1 3 34 34 H 0.97003 * 120.00281 * 272.06363 * 5 3 2 35 35 H 0.97002 * 120.00003 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.99487 * 359.97438 * 19 18 8 37 37 H 1.07998 * 120.00448 * 180.27529 * 20 19 18 38 38 H 1.08003 * 120.00044 * 179.83086 * 21 20 19 39 39 H 1.07989 * 120.00122 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.00419 * 359.97438 * 23 18 8 41 41 H 1.09003 * 110.01663 * 58.61205 * 24 3 2 42 42 H 1.09000 * 110.49150 * 335.78329 * 25 24 3 43 43 H 1.09004 * 110.48655 * 98.43156 * 25 24 3 44 44 H 1.08993 * 110.75499 * 279.62392 * 26 25 24 45 45 H 1.08999 * 110.91352 * 156.33179 * 26 25 24 46 46 H 1.09004 * 110.48424 * 203.38092 * 27 26 25 47 47 H 1.09002 * 110.60215 * 80.79240 * 27 26 25 48 48 H 1.09004 * 110.02807 * 238.57087 * 28 24 3 49 49 H 1.08999 * 110.03109 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5873 1.9879 0.8282 5 7 1.6794 2.0879 -1.2647 6 6 0.5251 2.7764 -1.3650 7 8 -0.1677 2.9448 -0.3839 8 6 0.0952 3.3368 -2.6962 9 1 0.8928 3.9578 -3.1037 10 6 -0.1960 2.2049 -3.6475 11 1 -0.9006 1.4345 -3.3707 12 6 0.4372 2.1526 -4.8711 13 7 0.2754 1.1061 -5.6510 14 14 1.5249 3.5681 -5.4211 15 1 2.9347 3.2810 -5.0535 16 1 1.4204 3.7295 -6.8937 17 1 1.0842 4.8193 -4.7536 18 6 -1.1467 4.1707 -2.5127 19 6 -2.2840 3.6060 -1.9664 20 6 -3.4217 4.3720 -1.7940 21 6 -3.4249 5.7004 -2.1764 22 6 -2.2892 6.2638 -2.7276 23 6 -1.1502 5.4988 -2.8960 24 6 3.5617 1.4455 0.1585 25 6 3.9525 0.8325 1.5190 26 6 5.1647 1.6781 1.9826 27 6 4.7813 3.1062 1.5217 28 6 4.0886 2.8913 0.1608 29 1 -0.3632 -1.0232 0.0976 30 1 -0.3633 0.5959 0.8372 31 1 -0.3634 0.4270 -0.9347 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2715 2.0199 -2.0301 35 1 0.7206 1.0694 -6.5121 36 1 -2.2827 2.5670 -1.6714 37 1 -4.3088 3.9320 -1.3631 38 1 -4.3146 6.2982 -2.0443 39 1 -2.2919 7.3014 -3.0267 40 1 -0.2630 5.9391 -3.3266 41 1 4.0224 0.8812 -0.6523 42 1 3.1303 0.9233 2.2288 43 1 4.2399 -0.2121 1.3984 44 1 6.0785 1.3455 1.4903 45 1 5.2751 1.6385 3.0662 46 1 5.6735 3.7211 1.4029 47 1 4.0936 3.5665 2.2311 48 1 4.8056 3.0286 -0.6486 49 1 3.2602 3.5907 0.0485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525704100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:57 Heat of formation + Delta-G solvation = -45.179619 kcal Electronic energy + Delta-G solvation = -27508.742799 eV Core-core repulsion = 24013.008517 eV Total energy + Delta-G solvation = -3495.734282 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.72838 -38.60729 -37.49801 -34.75047 -33.60849 -31.73379 -31.39150 -30.09870 -29.31290 -28.61875 -27.64816 -24.64260 -23.47684 -21.86248 -21.61474 -20.60287 -20.45221 -19.68351 -19.02143 -17.20253 -16.34484 -16.15042 -15.87721 -15.29043 -14.97507 -14.72584 -14.24516 -14.11894 -13.74520 -13.40063 -13.25625 -12.94183 -12.90614 -12.74553 -12.46750 -12.22227 -11.95939 -11.92623 -11.64078 -11.31420 -11.17096 -11.12459 -11.08369 -11.05343 -10.81678 -10.67482 -10.53609 -10.47408 -10.36288 -10.17773 -10.10170 -9.92284 -9.52389 -8.95412 -8.64125 -8.22980 -8.09681 -7.77824 -6.31567 -4.33019 2.18660 2.24616 3.08934 3.20614 3.22422 3.67039 4.00976 4.18317 4.61115 4.63126 4.67494 4.76938 5.03698 5.15480 5.42511 5.46126 5.51085 5.57884 5.60834 5.63255 5.65288 5.66626 5.74069 5.76917 5.83770 5.86816 5.92916 5.98932 6.05127 6.11048 6.20287 6.24722 6.27776 6.31100 6.34771 6.39273 6.41924 6.44752 6.49043 6.68428 6.78223 6.88298 6.90993 7.20160 7.24527 7.28584 7.34800 7.61069 7.82297 8.21641 8.39939 8.72148 9.22927 9.26647 10.79806 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.004938 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.830505 B = 5668.384720 C = 6388.621418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.131 4.131 3 C 0.152 3.848 4 H 0.087 0.913 5 N -0.722 5.722 6 C 0.532 3.468 7 O -0.561 6.561 8 C 0.024 3.976 9 H 0.065 0.935 10 C -0.501 4.501 11 H 0.082 0.918 12 C 0.082 3.918 13 N -0.881 5.881 14 Si 0.864 3.136 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.258 1.258 18 C -0.024 4.024 19 C -0.072 4.072 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.130 4.130 23 C -0.134 4.134 24 C -0.100 4.100 25 C -0.114 4.114 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.122 4.122 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.399 0.601 35 H 0.268 0.732 36 H 0.116 0.884 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.703 2.496 10.495 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.170 4.170 3 C 0.046 3.954 4 H 0.105 0.895 5 N -0.373 5.373 6 C 0.321 3.679 7 O -0.440 6.440 8 C 0.002 3.998 9 H 0.083 0.917 10 C -0.539 4.539 11 H 0.100 0.900 12 C -0.123 4.123 13 N -0.517 5.517 14 Si 0.690 3.310 15 H -0.199 1.199 16 H -0.209 1.209 17 H -0.183 1.183 18 C -0.025 4.025 19 C -0.090 4.090 20 C -0.149 4.149 21 C -0.163 4.163 22 C -0.148 4.148 23 C -0.152 4.152 24 C -0.119 4.119 25 C -0.152 4.152 26 C -0.162 4.162 27 C -0.162 4.162 28 C -0.159 4.159 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.233 0.767 35 H 0.078 0.922 36 H 0.134 0.866 37 H 0.127 0.873 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.128 0.872 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.239 2.502 10.988 12.881 hybrid contribution 0.823 0.534 -1.054 1.440 sum 7.062 3.036 9.934 12.561 Atomic orbital electron populations 1.21712 0.95164 1.00208 1.03196 1.21937 0.97065 0.96540 1.01466 1.21019 0.92754 0.93196 0.88392 0.89472 1.45864 1.23212 1.54643 1.13538 1.21343 0.79358 0.76276 0.90892 1.90575 1.53610 1.60356 1.39457 1.18485 0.92914 0.96119 0.92242 0.91689 1.20532 1.26911 1.06900 0.99518 0.89995 1.25046 0.95763 0.95276 0.96186 1.69870 1.42747 1.28050 1.11001 0.87032 0.81038 0.84027 0.78858 1.19853 1.20858 1.18275 1.19934 0.96356 0.92440 0.93765 1.20840 0.91897 0.99564 0.96740 1.21016 0.98072 0.94390 1.01385 1.20853 0.97817 0.95514 1.02072 1.20878 0.93743 0.98963 1.01224 1.20994 0.98118 0.94099 1.01995 1.22072 0.95262 0.96464 0.98151 1.22377 0.97802 0.98874 0.96188 1.22489 0.98063 0.95430 1.00223 1.22345 0.99842 0.96779 0.97218 1.22188 1.00104 0.96572 0.97059 0.93999 0.92801 0.91605 0.91856 0.92062 0.76741 0.92174 0.86601 0.87258 0.87435 0.87347 0.87228 0.90695 0.91270 0.91636 0.91738 0.91889 0.92112 0.91780 0.92021 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.73 37.16 0.32 -2.16 16 2 C -0.13 -1.96 5.50 -26.73 -0.15 -2.10 16 3 C 0.15 2.29 1.47 -67.93 -0.10 2.19 16 4 H 0.09 1.47 7.27 -51.93 -0.38 1.09 16 5 N -0.72 -12.87 4.22 -53.80 -0.23 -13.10 16 6 C 0.53 11.15 5.53 -10.99 -0.06 11.09 16 7 O -0.56 -12.64 13.18 5.55 0.07 -12.57 16 8 C 0.02 0.54 2.21 -94.08 -0.21 0.33 16 9 H 0.07 1.42 4.38 -51.93 -0.23 1.19 16 10 C -0.50 -12.74 8.48 -34.44 -0.29 -13.03 16 11 H 0.08 2.34 8.06 -52.49 -0.42 1.91 16 12 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 13 N -0.88 -24.57 13.96 55.43 0.77 -23.80 16 14 Si 0.86 19.22 27.21 -169.99 -4.62 14.59 16 15 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.26 -5.50 5.93 56.52 0.33 -5.17 16 18 C -0.02 -0.53 4.47 -104.62 -0.47 -1.00 16 19 C -0.07 -1.56 7.97 -39.58 -0.32 -1.87 16 20 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 21 C -0.14 -2.51 10.05 -39.58 -0.40 -2.91 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 23 C -0.13 -2.71 9.67 -39.59 -0.38 -3.10 16 24 C -0.10 -1.23 2.60 -89.50 -0.23 -1.47 16 25 C -0.11 -1.19 5.21 -25.07 -0.13 -1.32 16 26 C -0.12 -1.18 6.91 -24.74 -0.17 -1.35 16 27 C -0.12 -1.30 6.83 -25.10 -0.17 -1.47 16 28 C -0.12 -1.48 6.19 -25.64 -0.16 -1.64 16 29 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 30 H 0.05 0.94 8.00 -51.93 -0.42 0.52 16 31 H 0.06 1.35 6.77 -51.93 -0.35 1.00 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.77 7.09 -51.93 -0.37 0.40 16 34 H 0.40 6.97 8.68 -40.82 -0.35 6.62 16 35 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.12 2.61 7.72 -52.49 -0.41 2.20 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.11 2.10 7.42 -52.48 -0.39 1.71 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.74 7.78 -51.93 -0.40 0.34 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.99 7.37 -51.93 -0.38 0.61 16 LS Contribution 382.38 15.07 5.76 5.76 Total: -1.00 -28.25 382.38 -10.42 -38.67 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -8.37 Total: 13.81 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: -3.80 Total: -23.37 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.55 Total: -36.90 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.07 Total: -12.57 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -4.62 Total: 14.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.25 -10.42 -38.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525704100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.506 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds