Wall clock time and date at job start Tue Mar 31 2020 11:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46855 * 2 1 4 4 H 1.09000 * 109.46952 * 53.69401 * 3 2 1 5 5 N 1.46493 * 109.47043 * 293.69247 * 3 2 1 6 6 C 1.34775 * 120.00107 * 92.06812 * 5 3 2 7 7 O 1.21285 * 120.00100 * 5.39382 * 6 5 3 8 8 C 1.50699 * 120.00214 * 185.39552 * 6 5 3 9 9 H 1.08992 * 109.47272 * 305.54556 * 8 6 5 10 10 C 1.50698 * 109.47317 * 65.54868 * 8 6 5 11 11 H 1.08002 * 120.00117 * 54.66682 * 10 8 6 12 12 C 1.37879 * 119.99905 * 234.67112 * 10 8 6 13 13 N 1.31515 * 119.99673 * 173.94487 * 12 10 8 14 14 Si 1.86797 * 119.99954 * 353.94416 * 12 10 8 15 15 H 1.48494 * 109.47220 * 94.00019 * 14 12 10 16 16 H 1.48503 * 109.46878 * 213.99804 * 14 12 10 17 17 H 1.48504 * 109.47111 * 333.99613 * 14 12 10 18 18 C 1.50702 * 109.47062 * 185.54689 * 8 6 5 19 19 C 1.38237 * 120.00192 * 302.02550 * 18 8 6 20 20 C 1.38231 * 120.00185 * 179.78915 * 19 18 8 21 21 C 1.38234 * 119.99733 * 0.44127 * 20 19 18 22 22 C 1.38239 * 120.00368 * 359.81212 * 21 20 19 23 23 C 1.38230 * 120.00006 * 122.30224 * 18 8 6 24 24 C 1.53003 * 109.46924 * 173.69190 * 3 2 1 25 25 C 1.54260 * 110.03320 * 297.16813 * 24 3 2 26 26 C 1.54895 * 104.19368 * 217.10537 * 25 24 3 27 27 C 1.54885 * 102.74703 * 37.94466 * 26 25 24 28 28 C 1.53874 * 110.02938 * 180.02562 * 24 3 2 29 29 H 1.09010 * 109.46432 * 185.44731 * 1 2 3 30 30 H 1.09000 * 109.47197 * 305.44138 * 1 2 3 31 31 H 1.08999 * 109.47430 * 65.44962 * 1 2 3 32 32 H 1.09004 * 109.47408 * 240.00305 * 2 1 3 33 33 H 1.09003 * 109.47595 * 120.00096 * 2 1 3 34 34 H 0.97003 * 120.00281 * 272.06363 * 5 3 2 35 35 H 0.97002 * 120.00003 * 179.97438 * 13 12 10 36 36 H 1.08000 * 119.99487 * 359.97438 * 19 18 8 37 37 H 1.07998 * 120.00448 * 180.27529 * 20 19 18 38 38 H 1.08003 * 120.00044 * 179.83086 * 21 20 19 39 39 H 1.07989 * 120.00122 * 179.97438 * 22 21 20 40 40 H 1.08005 * 120.00419 * 359.97438 * 23 18 8 41 41 H 1.09003 * 110.01663 * 58.61205 * 24 3 2 42 42 H 1.09000 * 110.49150 * 335.78329 * 25 24 3 43 43 H 1.09004 * 110.48655 * 98.43156 * 25 24 3 44 44 H 1.08993 * 110.75499 * 279.62392 * 26 25 24 45 45 H 1.08999 * 110.91352 * 156.33179 * 26 25 24 46 46 H 1.09004 * 110.48424 * 203.38092 * 27 26 25 47 47 H 1.09002 * 110.60215 * 80.79240 * 27 26 25 48 48 H 1.09004 * 110.02807 * 238.57087 * 28 24 3 49 49 H 1.08999 * 110.03109 * 359.97438 * 28 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5873 1.9879 0.8282 5 7 1.6794 2.0879 -1.2647 6 6 0.5251 2.7764 -1.3650 7 8 -0.1677 2.9448 -0.3839 8 6 0.0952 3.3368 -2.6962 9 1 0.8928 3.9578 -3.1037 10 6 -0.1960 2.2049 -3.6475 11 1 -0.9006 1.4345 -3.3707 12 6 0.4372 2.1526 -4.8711 13 7 0.2754 1.1061 -5.6510 14 14 1.5249 3.5681 -5.4211 15 1 2.9347 3.2810 -5.0535 16 1 1.4204 3.7295 -6.8937 17 1 1.0842 4.8193 -4.7536 18 6 -1.1467 4.1707 -2.5127 19 6 -2.2840 3.6060 -1.9664 20 6 -3.4217 4.3720 -1.7940 21 6 -3.4249 5.7004 -2.1764 22 6 -2.2892 6.2638 -2.7276 23 6 -1.1502 5.4988 -2.8960 24 6 3.5617 1.4455 0.1585 25 6 3.9525 0.8325 1.5190 26 6 5.1647 1.6781 1.9826 27 6 4.7813 3.1062 1.5217 28 6 4.0886 2.8913 0.1608 29 1 -0.3632 -1.0232 0.0976 30 1 -0.3633 0.5959 0.8372 31 1 -0.3634 0.4270 -0.9347 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2715 2.0199 -2.0301 35 1 0.7206 1.0694 -6.5121 36 1 -2.2827 2.5670 -1.6714 37 1 -4.3088 3.9320 -1.3631 38 1 -4.3146 6.2982 -2.0443 39 1 -2.2919 7.3014 -3.0267 40 1 -0.2630 5.9391 -3.3266 41 1 4.0224 0.8812 -0.6523 42 1 3.1303 0.9233 2.2288 43 1 4.2399 -0.2121 1.3984 44 1 6.0785 1.3455 1.4903 45 1 5.2751 1.6385 3.0662 46 1 5.6735 3.7211 1.4029 47 1 4.0936 3.5665 2.2311 48 1 4.8056 3.0286 -0.6486 49 1 3.2602 3.5907 0.0485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525704100.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:56 Heat of formation + Delta-G solvation = -59.053718 kcal Electronic energy + Delta-G solvation = -27509.344425 eV Core-core repulsion = 24013.008517 eV Total energy + Delta-G solvation = -3496.335908 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21791 -39.93193 -38.84703 -36.05010 -35.48130 -33.45711 -32.95458 -31.61382 -30.46405 -29.56111 -29.22297 -26.03305 -25.20334 -23.39232 -22.99522 -21.92297 -21.48243 -20.92314 -20.39818 -19.15702 -17.80869 -17.73285 -17.17475 -16.45243 -16.36676 -16.13532 -15.81349 -15.49362 -15.29433 -14.78591 -14.62813 -14.42369 -14.30085 -14.16321 -14.00749 -13.66249 -13.49398 -13.42063 -12.91034 -12.88850 -12.77522 -12.45531 -12.10429 -12.03427 -11.95523 -11.90013 -11.85292 -11.70435 -11.66978 -11.60209 -11.42901 -11.38807 -11.22951 -10.83880 -10.42689 -9.72877 -9.62519 -9.35206 -8.33897 -6.40319 0.65546 0.72191 1.31979 1.38038 1.46021 1.98090 2.29340 2.56276 3.00085 3.18198 3.60348 3.73030 3.83072 4.08928 4.15108 4.22723 4.23085 4.26616 4.33328 4.40731 4.45883 4.53197 4.58664 4.60775 4.63176 4.69419 4.77850 4.84440 4.85407 4.89774 4.94283 4.99178 5.03081 5.10381 5.12288 5.21304 5.26540 5.28961 5.33358 5.36240 5.41458 5.42727 5.49698 5.55103 5.70927 5.74793 5.85399 5.96716 6.21484 6.32226 6.61281 6.80697 7.22679 7.58987 8.81319 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011427 B = 0.004938 C = 0.004382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2449.830505 B = 5668.384720 C = 6388.621418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.126 4.126 3 C 0.153 3.847 4 H 0.070 0.930 5 N -0.715 5.715 6 C 0.532 3.468 7 O -0.582 6.582 8 C 0.026 3.974 9 H 0.072 0.928 10 C -0.493 4.493 11 H 0.031 0.969 12 C 0.033 3.967 13 N -0.930 5.930 14 Si 0.923 3.077 15 H -0.251 1.251 16 H -0.287 1.287 17 H -0.242 1.242 18 C -0.055 4.055 19 C -0.100 4.100 20 C -0.135 4.135 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.149 4.149 24 C -0.095 4.095 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.123 4.123 28 C -0.123 4.123 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.021 0.979 32 H 0.058 0.942 33 H 0.094 0.906 34 H 0.401 0.599 35 H 0.270 0.730 36 H 0.086 0.914 37 H 0.132 0.868 38 H 0.150 0.850 39 H 0.148 0.852 40 H 0.120 0.880 41 H 0.080 0.920 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.057 0.943 48 H 0.067 0.933 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.193 4.494 11.485 14.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.049 3.951 4 H 0.088 0.912 5 N -0.364 5.364 6 C 0.320 3.680 7 O -0.462 6.462 8 C 0.004 3.996 9 H 0.090 0.910 10 C -0.531 4.531 11 H 0.049 0.951 12 C -0.167 4.167 13 N -0.568 5.568 14 Si 0.746 3.254 15 H -0.175 1.175 16 H -0.213 1.213 17 H -0.166 1.166 18 C -0.056 4.056 19 C -0.118 4.118 20 C -0.153 4.153 21 C -0.154 4.154 22 C -0.142 4.142 23 C -0.167 4.167 24 C -0.114 4.114 25 C -0.151 4.151 26 C -0.155 4.155 27 C -0.161 4.161 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.235 0.765 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.150 0.850 38 H 0.167 0.833 39 H 0.166 0.834 40 H 0.138 0.862 41 H 0.098 0.902 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.076 0.924 48 H 0.086 0.914 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.749 4.494 12.006 14.980 hybrid contribution 0.211 -0.113 -1.298 1.320 sum 7.961 4.381 10.708 14.044 Atomic orbital electron populations 1.21630 0.97117 1.00538 1.00388 1.21928 0.95127 0.96632 1.02768 1.21161 0.95033 0.92655 0.86287 0.91204 1.45855 1.22117 1.53729 1.14696 1.21083 0.80050 0.76662 0.90195 1.90547 1.54427 1.61350 1.39898 1.18416 0.93737 0.95235 0.92170 0.90969 1.20402 1.25532 1.06741 1.00440 0.95090 1.25803 0.97263 0.97718 0.95926 1.70014 1.44717 1.30409 1.11673 0.86074 0.80179 0.81155 0.77966 1.17470 1.21313 1.16566 1.20014 0.96118 0.93782 0.95695 1.20774 0.93581 0.98763 0.98687 1.21330 0.97732 0.95260 1.00988 1.21331 0.99174 0.94866 1.00059 1.21343 0.92693 1.00526 0.99638 1.21231 0.99751 0.93466 1.02289 1.22055 0.92501 0.97069 0.99792 1.22392 0.98273 0.99808 0.94597 1.22474 0.97792 0.94077 1.01195 1.22343 0.99977 0.97891 0.95843 1.22187 0.99538 0.95753 0.98619 0.92426 0.93589 0.95980 0.92286 0.88771 0.76522 0.92077 0.89618 0.85033 0.83277 0.83436 0.86227 0.90169 0.91604 0.90149 0.90694 0.90503 0.90891 0.92403 0.91377 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 8.73 71.98 0.63 -4.39 16 2 C -0.13 -3.76 5.50 30.60 0.17 -3.59 16 3 C 0.15 4.69 1.47 45.00 0.07 4.75 16 4 H 0.07 2.42 7.27 -2.39 -0.02 2.40 16 5 N -0.71 -26.44 4.22 -442.53 -1.87 -28.31 16 6 C 0.53 23.44 5.53 87.66 0.48 23.93 16 7 O -0.58 -27.73 13.18 -3.04 -0.04 -27.77 16 8 C 0.03 1.21 2.21 -13.03 -0.03 1.18 16 9 H 0.07 3.17 4.38 -2.39 -0.01 3.16 16 10 C -0.49 -26.64 8.48 25.60 0.22 -26.42 16 11 H 0.03 1.94 8.06 -2.91 -0.02 1.92 16 12 C 0.03 1.76 5.47 84.65 0.46 2.22 16 13 N -0.93 -54.19 13.96 21.45 0.30 -53.89 16 14 Si 0.92 39.64 27.21 68.60 1.87 41.51 16 15 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 16 H -0.29 -12.51 7.11 99.48 0.71 -11.81 16 17 H -0.24 -9.67 5.93 99.48 0.59 -9.08 16 18 C -0.06 -2.51 4.47 -19.87 -0.09 -2.60 16 19 C -0.10 -4.51 7.97 22.27 0.18 -4.33 16 20 C -0.14 -5.01 10.05 22.27 0.22 -4.78 16 21 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 22 C -0.12 -4.07 10.05 22.27 0.22 -3.84 16 23 C -0.15 -5.88 9.67 22.27 0.22 -5.66 16 24 C -0.10 -2.22 2.60 -10.07 -0.03 -2.25 16 25 C -0.11 -2.08 5.21 31.67 0.16 -1.91 16 26 C -0.12 -1.88 6.91 31.89 0.22 -1.66 16 27 C -0.12 -2.33 6.83 31.65 0.22 -2.11 16 28 C -0.12 -2.88 6.19 31.30 0.19 -2.68 16 29 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 30 H 0.04 1.69 8.00 -2.39 -0.02 1.67 16 31 H 0.02 0.96 6.77 -2.39 -0.02 0.94 16 32 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.09 2.22 7.09 -2.39 -0.02 2.20 16 34 H 0.40 14.36 8.68 -92.71 -0.80 13.56 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.09 4.26 7.72 -2.91 -0.02 4.24 16 37 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.15 3.66 8.06 -2.92 -0.02 3.64 16 40 H 0.12 4.36 7.42 -2.91 -0.02 4.33 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.07 1.28 7.78 -2.39 -0.02 1.26 16 43 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 47 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 49 H 0.04 1.28 7.37 -2.39 -0.02 1.26 16 Total: -1.00 -66.07 382.38 4.00 -62.07 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: 0.00 Total: 44.67 kcal Atomic # 6 Polarization: -42.02 SS G_CDS: 3.74 Total: -38.27 kcal Atomic # 7 Polarization: -80.63 SS G_CDS: -1.57 Total: -82.20 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -0.04 Total: -27.77 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.87 Total: 41.51 kcal Total: -66.07 4.00 -62.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525704100.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.017 kcal (2) G-P(sol) polarization free energy of solvation -66.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds