Wall clock time and date at job start Tue Mar 31 2020 11:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 H 1.09005 * 110.81490 * 51.66735 * 3 2 1 5 5 C 1.54886 * 110.75903 * 288.32911 * 3 2 1 6 6 C 1.54264 * 104.19785 * 203.74141 * 5 3 2 7 7 C 1.53874 * 106.59913 * 23.60898 * 6 5 3 8 8 C 1.54270 * 106.59714 * 359.97438 * 7 6 5 9 9 H 1.09001 * 110.48168 * 95.19779 * 8 7 6 10 10 C 1.52996 * 110.48803 * 217.70888 * 8 7 6 11 11 N 1.46500 * 109.47437 * 293.54799 * 10 8 7 12 12 C 1.34777 * 119.99894 * 179.97438 * 11 10 8 13 13 O 1.21273 * 120.00207 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99485 * 179.97438 * 12 11 10 15 15 H 1.08998 * 109.46975 * 60.00802 * 14 12 11 16 16 C 1.50692 * 109.47494 * 300.00393 * 14 12 11 17 17 H 1.07996 * 120.00322 * 324.88233 * 16 14 12 18 18 C 1.37879 * 119.99923 * 144.88119 * 16 14 12 19 19 N 1.31509 * 120.00033 * 5.19347 * 18 16 14 20 20 Si 1.86801 * 120.00051 * 185.19291 * 18 16 14 21 21 H 1.48495 * 109.47267 * 90.00126 * 20 18 16 22 22 H 1.48500 * 109.47140 * 210.00433 * 20 18 16 23 23 H 1.48501 * 109.46902 * 330.00051 * 20 18 16 24 24 C 1.50706 * 109.46823 * 180.02562 * 14 12 11 25 25 C 1.38230 * 119.99541 * 66.01725 * 24 14 12 26 26 C 1.38244 * 119.99932 * 179.78863 * 25 24 14 27 27 C 1.38240 * 119.99454 * 0.46211 * 26 25 24 28 28 C 1.38239 * 120.00221 * 359.76579 * 27 26 25 29 29 C 1.38230 * 120.00020 * 246.28784 * 24 14 12 30 30 H 1.08998 * 109.47212 * 300.00054 * 1 2 3 31 31 H 1.08999 * 109.47379 * 60.00003 * 1 2 3 32 32 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46866 * 240.00215 * 2 1 3 34 34 H 1.09000 * 109.46862 * 119.99906 * 2 1 3 35 35 H 1.09003 * 110.48378 * 85.06404 * 5 3 2 36 36 H 1.08995 * 110.60083 * 322.47768 * 5 3 2 37 37 H 1.09009 * 110.03180 * 264.32440 * 6 5 3 38 38 H 1.09003 * 110.07530 * 142.91659 * 6 5 3 39 39 H 1.08999 * 110.03397 * 240.71931 * 7 6 5 40 40 H 1.08999 * 110.03281 * 119.28204 * 7 6 5 41 41 H 1.09004 * 109.46943 * 173.54394 * 10 8 7 42 42 H 1.09003 * 109.47150 * 53.55272 * 10 8 7 43 43 H 0.96996 * 119.99572 * 0.27863 * 11 10 8 44 44 H 0.97002 * 120.00271 * 179.97438 * 19 18 16 45 45 H 1.07997 * 120.00336 * 359.97438 * 25 24 14 46 46 H 1.07999 * 120.00317 * 180.25252 * 26 25 24 47 47 H 1.07999 * 119.99708 * 179.79230 * 27 26 25 48 48 H 1.07997 * 120.00004 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.00135 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0183 0.7993 5 6 1.7936 2.1119 -1.3748 6 6 2.8428 3.2409 -1.4394 7 6 3.9808 2.8386 -0.4850 8 6 3.5830 1.4794 0.1268 9 1 4.0330 0.6615 -0.4359 10 6 4.0020 1.4105 1.5967 11 7 5.4641 1.4167 1.6885 12 6 6.0637 1.3626 2.8944 13 8 5.3930 1.3084 3.9033 14 6 7.5677 1.3683 2.9888 15 1 7.9563 2.2836 2.5423 16 6 8.1219 0.1758 2.2527 17 1 7.5829 -0.7600 2.2575 18 6 9.3170 0.2795 1.5731 19 7 10.0239 1.3858 1.6509 20 14 9.9323 -1.1514 0.5419 21 1 9.4179 -1.0194 -0.8448 22 1 11.4172 -1.1447 0.5219 23 1 9.4510 -2.4277 1.1291 24 6 7.9804 1.3006 4.4366 25 6 7.7091 0.1674 5.1803 26 6 8.0915 0.1036 6.5073 27 6 8.7367 1.1767 7.0930 28 6 9.0037 2.3118 6.3505 29 6 8.6251 2.3739 5.0224 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7858 2.5244 -1.4231 36 1 1.9515 1.3977 -2.1829 37 1 2.3988 4.1822 -1.1153 38 1 3.2249 3.3389 -2.4556 39 1 4.0891 3.5845 0.3023 40 1 4.9149 2.7404 -1.0381 41 1 3.6137 0.4949 2.0426 42 1 3.6008 2.2726 2.1296 43 1 6.0005 1.4641 0.8818 44 1 10.8649 1.4586 1.1731 45 1 7.2011 -0.6692 4.7239 46 1 7.8832 -0.7834 7.0872 47 1 9.0324 1.1282 8.1306 48 1 9.5081 3.1501 6.8080 49 1 8.8335 3.2608 4.4425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526570944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:26 Heat of formation + Delta-G solvation = -54.319628 kcal Electronic energy + Delta-G solvation = -26482.899393 eV Core-core repulsion = 22986.768770 eV Total energy + Delta-G solvation = -3496.130623 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.43086 -38.67551 -37.52559 -34.04599 -33.61123 -33.07902 -31.07137 -29.89415 -29.72162 -27.67389 -27.29273 -24.67634 -23.55741 -22.46923 -21.55776 -20.86109 -20.07839 -19.74399 -19.03244 -16.78375 -16.26287 -15.83087 -15.59401 -15.07757 -14.88124 -14.50658 -14.38024 -14.30085 -14.02581 -13.71437 -13.23479 -13.09662 -13.04912 -12.58568 -12.42424 -12.24548 -12.08476 -12.02583 -11.63135 -11.51336 -11.24793 -11.15794 -11.03113 -11.00134 -10.74688 -10.60030 -10.51050 -10.45517 -10.38579 -10.35865 -10.22963 -9.95998 -9.39586 -8.75837 -8.57030 -8.24762 -7.90280 -7.56051 -6.25979 -4.32116 2.42097 2.45005 3.18657 3.27189 3.30085 3.77683 4.06188 4.29371 4.49436 4.56650 4.70225 4.89159 5.06483 5.10744 5.15466 5.19709 5.34775 5.47582 5.49485 5.54342 5.58140 5.69740 5.75650 5.78804 5.83131 5.85403 5.89944 5.93373 5.97534 6.04158 6.09212 6.16687 6.17819 6.25276 6.27014 6.36090 6.44331 6.51273 6.55286 6.64718 6.89667 7.01799 7.19640 7.30426 7.40911 7.49180 7.64568 7.79345 7.99741 8.11216 8.45421 8.72363 9.29398 9.35112 10.82324 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.003835 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.400488 B = 7299.667516 C = 8441.919790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.078 0.922 5 C -0.117 4.117 6 C -0.124 4.124 7 C -0.122 4.122 8 C -0.100 4.100 9 H 0.081 0.919 10 C 0.131 3.869 11 N -0.729 5.729 12 C 0.526 3.474 13 O -0.570 6.570 14 C 0.050 3.950 15 H 0.088 0.912 16 C -0.513 4.513 17 H 0.062 0.938 18 C 0.074 3.926 19 N -0.878 5.878 20 Si 0.897 3.103 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C -0.007 4.007 25 C -0.085 4.085 26 C -0.135 4.135 27 C -0.150 4.150 28 C -0.132 4.132 29 C -0.118 4.118 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.404 0.596 44 H 0.266 0.734 45 H 0.110 0.890 46 H 0.105 0.895 47 H 0.104 0.896 48 H 0.106 0.894 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.190 1.681 -4.753 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.096 0.904 5 C -0.155 4.155 6 C -0.162 4.162 7 C -0.160 4.160 8 C -0.119 4.119 9 H 0.100 0.900 10 C 0.006 3.994 11 N -0.381 5.381 12 C 0.315 3.685 13 O -0.449 6.449 14 C 0.029 3.971 15 H 0.105 0.895 16 C -0.551 4.551 17 H 0.080 0.920 18 C -0.131 4.131 19 N -0.513 5.513 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.211 1.211 23 H -0.197 1.197 24 C -0.008 4.008 25 C -0.103 4.103 26 C -0.153 4.153 27 C -0.168 4.168 28 C -0.150 4.150 29 C -0.137 4.137 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.239 0.761 44 H 0.076 0.924 45 H 0.128 0.872 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.124 0.876 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.492 1.739 -4.102 13.263 hybrid contribution 0.832 -0.755 -0.954 1.474 sum -11.660 0.984 -5.056 12.747 Atomic orbital electron populations 1.21771 0.96069 1.01335 1.01649 1.21553 0.95623 0.96138 1.02284 1.22127 0.94487 0.96039 0.97611 0.90396 1.22404 0.98546 0.97492 0.97028 1.22121 0.96173 0.98366 0.99511 1.22216 0.98327 0.96698 0.98722 1.22279 0.95533 0.98294 0.95747 0.90031 1.21205 0.82147 1.01262 0.94758 1.45911 1.05832 1.76666 1.09709 1.21621 0.92056 0.72870 0.81918 1.90574 1.67430 1.50987 1.35888 1.18118 0.86596 1.01708 0.90706 0.89464 1.20685 1.06720 0.96212 1.31457 0.91975 1.24966 0.96176 0.96024 0.95948 1.69919 1.13870 1.26300 1.41243 0.86502 0.78065 0.82595 0.80421 1.20365 1.21074 1.19663 1.20016 0.93504 0.92007 0.95300 1.20813 0.98483 0.97935 0.93087 1.20950 1.00658 0.98090 0.95611 1.20787 1.02450 0.94696 0.98857 1.20895 1.01616 0.97742 0.94791 1.20981 0.99848 0.98567 0.94268 0.92813 0.92867 0.93027 0.91956 0.91654 0.91979 0.91683 0.92121 0.92088 0.91436 0.91515 0.92418 0.92505 0.76120 0.92392 0.87201 0.87650 0.87765 0.87609 0.87071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.12 -1.16 5.43 -26.73 -0.15 -1.30 16 3 C -0.08 -0.85 2.30 -88.65 -0.20 -1.06 16 4 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 5 C -0.12 -1.07 5.69 -25.07 -0.14 -1.21 16 6 C -0.12 -1.20 6.80 -25.61 -0.17 -1.37 16 7 C -0.12 -1.40 6.05 -25.61 -0.15 -1.56 16 8 C -0.10 -1.20 2.37 -88.97 -0.21 -1.41 16 9 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 10 C 0.13 2.01 4.99 -4.04 -0.02 1.99 16 11 N -0.73 -13.41 5.29 -60.29 -0.32 -13.73 16 12 C 0.53 11.79 7.04 -10.99 -0.08 11.71 16 13 O -0.57 -14.07 15.41 5.56 0.09 -13.98 16 14 C 0.05 1.19 2.38 -94.08 -0.22 0.97 16 15 H 0.09 2.20 7.13 -51.93 -0.37 1.83 16 16 C -0.51 -12.85 7.47 -34.44 -0.26 -13.11 16 17 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 18 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 19 N -0.88 -23.17 12.84 55.43 0.71 -22.46 16 20 Si 0.90 19.89 29.54 -169.99 -5.02 14.87 16 21 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 22 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 24 C -0.01 -0.17 4.30 -104.62 -0.45 -0.62 16 25 C -0.09 -1.96 8.30 -39.58 -0.33 -2.29 16 26 C -0.13 -2.73 10.05 -39.58 -0.40 -3.13 16 27 C -0.15 -2.86 10.05 -39.58 -0.40 -3.25 16 28 C -0.13 -2.62 10.05 -39.58 -0.40 -3.02 16 29 C -0.12 -2.65 9.67 -39.58 -0.38 -3.03 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.41 7.65 -51.93 -0.40 0.02 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.59 7.99 -51.93 -0.41 0.18 16 34 H 0.06 0.70 7.78 -51.93 -0.40 0.30 16 35 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 36 H 0.06 0.58 7.94 -51.93 -0.41 0.17 16 37 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.84 7.77 -51.93 -0.40 0.43 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 0.94 7.78 -51.93 -0.40 0.54 16 42 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 43 H 0.40 7.13 8.21 -40.82 -0.34 6.79 16 44 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 45 H 0.11 2.56 7.89 -52.49 -0.41 2.15 16 46 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 47 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 48 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 49 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 393.95 15.07 5.94 5.94 Total: -1.00 -28.44 393.95 -10.88 -39.31 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: -8.57 Total: 10.88 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.70 Total: -20.84 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.39 Total: -36.18 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.09 Total: -13.98 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.87 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -28.44 -10.88 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526570944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.005 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds