Wall clock time and date at job start Tue Mar 31 2020 11:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47131 * 2 1 4 4 H 1.09005 * 110.81490 * 51.66735 * 3 2 1 5 5 C 1.54886 * 110.75903 * 288.32911 * 3 2 1 6 6 C 1.54264 * 104.19785 * 203.74141 * 5 3 2 7 7 C 1.53874 * 106.59913 * 23.60898 * 6 5 3 8 8 C 1.54270 * 106.59714 * 359.97438 * 7 6 5 9 9 H 1.09001 * 110.48168 * 95.19779 * 8 7 6 10 10 C 1.52996 * 110.48803 * 217.70888 * 8 7 6 11 11 N 1.46500 * 109.47437 * 293.54799 * 10 8 7 12 12 C 1.34777 * 119.99894 * 179.97438 * 11 10 8 13 13 O 1.21273 * 120.00207 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99485 * 179.97438 * 12 11 10 15 15 H 1.08998 * 109.46975 * 60.00802 * 14 12 11 16 16 C 1.50692 * 109.47494 * 300.00393 * 14 12 11 17 17 H 1.07996 * 120.00322 * 324.88233 * 16 14 12 18 18 C 1.37879 * 119.99923 * 144.88119 * 16 14 12 19 19 N 1.31509 * 120.00033 * 5.19347 * 18 16 14 20 20 Si 1.86801 * 120.00051 * 185.19291 * 18 16 14 21 21 H 1.48495 * 109.47267 * 90.00126 * 20 18 16 22 22 H 1.48500 * 109.47140 * 210.00433 * 20 18 16 23 23 H 1.48501 * 109.46902 * 330.00051 * 20 18 16 24 24 C 1.50706 * 109.46823 * 180.02562 * 14 12 11 25 25 C 1.38230 * 119.99541 * 66.01725 * 24 14 12 26 26 C 1.38244 * 119.99932 * 179.78863 * 25 24 14 27 27 C 1.38240 * 119.99454 * 0.46211 * 26 25 24 28 28 C 1.38239 * 120.00221 * 359.76579 * 27 26 25 29 29 C 1.38230 * 120.00020 * 246.28784 * 24 14 12 30 30 H 1.08998 * 109.47212 * 300.00054 * 1 2 3 31 31 H 1.08999 * 109.47379 * 60.00003 * 1 2 3 32 32 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46866 * 240.00215 * 2 1 3 34 34 H 1.09000 * 109.46862 * 119.99906 * 2 1 3 35 35 H 1.09003 * 110.48378 * 85.06404 * 5 3 2 36 36 H 1.08995 * 110.60083 * 322.47768 * 5 3 2 37 37 H 1.09009 * 110.03180 * 264.32440 * 6 5 3 38 38 H 1.09003 * 110.07530 * 142.91659 * 6 5 3 39 39 H 1.08999 * 110.03397 * 240.71931 * 7 6 5 40 40 H 1.08999 * 110.03281 * 119.28204 * 7 6 5 41 41 H 1.09004 * 109.46943 * 173.54394 * 10 8 7 42 42 H 1.09003 * 109.47150 * 53.55272 * 10 8 7 43 43 H 0.96996 * 119.99572 * 0.27863 * 11 10 8 44 44 H 0.97002 * 120.00271 * 179.97438 * 19 18 16 45 45 H 1.07997 * 120.00336 * 359.97438 * 25 24 14 46 46 H 1.07999 * 120.00317 * 180.25252 * 26 25 24 47 47 H 1.07999 * 119.99708 * 179.79230 * 27 26 25 48 48 H 1.07997 * 120.00004 * 180.02562 * 28 27 26 49 49 H 1.07999 * 120.00135 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5733 2.0183 0.7993 5 6 1.7936 2.1119 -1.3748 6 6 2.8428 3.2409 -1.4394 7 6 3.9808 2.8386 -0.4850 8 6 3.5830 1.4794 0.1268 9 1 4.0330 0.6615 -0.4359 10 6 4.0020 1.4105 1.5967 11 7 5.4641 1.4167 1.6885 12 6 6.0637 1.3626 2.8944 13 8 5.3930 1.3084 3.9033 14 6 7.5677 1.3683 2.9888 15 1 7.9563 2.2836 2.5423 16 6 8.1219 0.1758 2.2527 17 1 7.5829 -0.7600 2.2575 18 6 9.3170 0.2795 1.5731 19 7 10.0239 1.3858 1.6509 20 14 9.9323 -1.1514 0.5419 21 1 9.4179 -1.0194 -0.8448 22 1 11.4172 -1.1447 0.5219 23 1 9.4510 -2.4277 1.1291 24 6 7.9804 1.3006 4.4366 25 6 7.7091 0.1674 5.1803 26 6 8.0915 0.1036 6.5073 27 6 8.7367 1.1767 7.0930 28 6 9.0037 2.3118 6.3505 29 6 8.6251 2.3739 5.0224 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.7858 2.5244 -1.4231 36 1 1.9515 1.3977 -2.1829 37 1 2.3988 4.1822 -1.1153 38 1 3.2249 3.3389 -2.4556 39 1 4.0891 3.5845 0.3023 40 1 4.9149 2.7404 -1.0381 41 1 3.6137 0.4949 2.0426 42 1 3.6008 2.2726 2.1296 43 1 6.0005 1.4641 0.8818 44 1 10.8649 1.4586 1.1731 45 1 7.2011 -0.6692 4.7239 46 1 7.8832 -0.7834 7.0872 47 1 9.0324 1.1282 8.1306 48 1 9.5081 3.1501 6.8080 49 1 8.8335 3.2608 4.4425 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526570944.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:25 Heat of formation + Delta-G solvation = -67.188747 kcal Electronic energy + Delta-G solvation = -26483.457440 eV Core-core repulsion = 22986.768770 eV Total energy + Delta-G solvation = -3496.688670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95032 -39.92320 -39.10022 -35.54716 -35.43550 -33.94200 -32.89447 -31.53799 -30.94710 -28.98434 -28.47232 -26.19733 -25.11020 -23.31700 -23.21005 -22.44118 -21.25109 -20.74251 -20.47402 -18.68079 -17.83081 -17.55616 -16.87093 -16.40742 -16.32288 -15.88096 -15.78394 -15.52067 -15.27755 -15.23893 -14.62981 -14.36894 -14.07485 -14.01678 -13.91468 -13.70807 -13.49126 -13.30476 -13.12058 -12.81838 -12.79231 -12.76407 -12.21218 -12.10577 -11.99682 -11.95024 -11.78503 -11.66572 -11.46486 -11.40401 -11.27549 -11.25071 -11.23352 -10.68421 -10.41024 -9.86005 -9.56099 -9.25558 -8.21150 -6.33027 0.75387 0.80615 1.41775 1.44254 1.53133 1.96350 2.42551 2.56281 3.07934 3.26997 3.60178 3.66181 3.76769 4.20714 4.22372 4.29763 4.30868 4.32612 4.39411 4.46418 4.47712 4.53316 4.58523 4.62638 4.66784 4.73765 4.82524 4.86827 4.94134 4.95117 4.97582 5.05580 5.10294 5.13860 5.19485 5.27078 5.28675 5.35830 5.37060 5.44438 5.44931 5.51478 5.61797 5.64523 5.71954 5.78083 5.83281 5.95256 6.23855 6.40613 6.71128 6.80981 7.34135 7.56190 8.86951 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.003835 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.400488 B = 7299.667516 C = 8441.919790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.080 4.080 4 H 0.075 0.925 5 C -0.111 4.111 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.093 4.093 9 H 0.081 0.919 10 C 0.133 3.867 11 N -0.717 5.717 12 C 0.524 3.476 13 O -0.596 6.596 14 C 0.052 3.948 15 H 0.065 0.935 16 C -0.516 4.516 17 H 0.051 0.949 18 C 0.035 3.965 19 N -0.905 5.905 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.275 1.275 24 C -0.036 4.036 25 C -0.112 4.112 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.129 4.129 29 C -0.143 4.143 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.070 0.930 39 H 0.054 0.946 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.051 0.949 43 H 0.408 0.592 44 H 0.267 0.733 45 H 0.093 0.907 46 H 0.136 0.864 47 H 0.148 0.852 48 H 0.140 0.860 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.736 1.390 -4.898 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.156 4.156 3 C -0.099 4.099 4 H 0.093 0.907 5 C -0.148 4.148 6 C -0.158 4.158 7 C -0.161 4.161 8 C -0.112 4.112 9 H 0.099 0.901 10 C 0.010 3.990 11 N -0.367 5.367 12 C 0.313 3.687 13 O -0.478 6.478 14 C 0.031 3.969 15 H 0.083 0.917 16 C -0.553 4.553 17 H 0.069 0.931 18 C -0.167 4.167 19 N -0.542 5.542 20 Si 0.780 3.220 21 H -0.190 1.190 22 H -0.212 1.212 23 H -0.200 1.200 24 C -0.037 4.037 25 C -0.130 4.130 26 C -0.153 4.153 27 C -0.162 4.162 28 C -0.147 4.147 29 C -0.161 4.161 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.243 0.757 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.153 0.847 47 H 0.165 0.835 48 H 0.158 0.842 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -13.059 1.451 -4.281 13.819 hybrid contribution 0.995 -0.637 -0.821 1.439 sum -12.064 0.814 -5.102 13.124 Atomic orbital electron populations 1.21746 0.94804 1.01852 1.02124 1.21543 0.96733 0.95562 1.01732 1.22109 0.92588 0.96601 0.98564 0.90707 1.22380 0.99149 0.97213 0.96051 1.22106 0.95485 0.98858 0.99353 1.22212 0.99194 0.95883 0.98800 1.22238 0.97209 0.98738 0.93007 0.90082 1.21340 0.79932 1.00446 0.97328 1.45857 1.07339 1.74943 1.08599 1.21431 0.91636 0.73017 0.82660 1.90538 1.67711 1.52608 1.36961 1.18011 0.87475 1.00227 0.91206 0.91660 1.20721 1.06856 0.96052 1.31720 0.93061 1.25592 0.96191 0.98099 0.96831 1.70020 1.14188 1.27833 1.42110 0.85611 0.77274 0.79623 0.79535 1.18952 1.21162 1.19956 1.20121 0.94937 0.93217 0.95432 1.20838 1.00000 0.97423 0.94733 1.21330 0.99709 0.99741 0.94564 1.21273 1.00721 0.93475 1.00696 1.21309 1.00571 0.99208 0.93640 1.21139 1.00858 0.98253 0.95896 0.92980 0.91724 0.92547 0.91531 0.93232 0.90439 0.91009 0.91512 0.91146 0.92719 0.91914 0.93360 0.93081 0.75675 0.92359 0.88876 0.84661 0.83463 0.84195 0.87558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.81 71.98 0.71 -1.56 16 2 C -0.12 -2.19 5.43 30.59 0.17 -2.03 16 3 C -0.08 -1.54 2.30 -9.51 -0.02 -1.57 16 4 H 0.07 1.52 8.06 -2.38 -0.02 1.50 16 5 C -0.11 -1.76 5.69 31.67 0.18 -1.58 16 6 C -0.12 -2.12 6.80 31.32 0.21 -1.90 16 7 C -0.12 -2.79 6.05 31.32 0.19 -2.60 16 8 C -0.09 -2.23 2.37 -9.73 -0.02 -2.25 16 9 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 10 C 0.13 4.23 4.99 86.38 0.43 4.66 16 11 N -0.72 -27.52 5.29 -463.07 -2.45 -29.97 16 12 C 0.52 24.61 7.04 87.66 0.62 25.23 16 13 O -0.60 -30.73 15.41 -3.01 -0.05 -30.78 16 14 C 0.05 2.61 2.38 -13.03 -0.03 2.58 16 15 H 0.07 3.50 7.13 -2.39 -0.02 3.49 16 16 C -0.52 -26.74 7.47 25.60 0.19 -26.54 16 17 H 0.05 2.71 7.82 -2.91 -0.02 2.69 16 18 C 0.03 1.80 5.45 84.66 0.46 2.26 16 19 N -0.90 -48.85 12.84 21.45 0.28 -48.57 16 20 Si 0.95 41.11 29.54 68.60 2.03 43.14 16 21 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 22 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 C -0.04 -1.78 4.30 -19.87 -0.09 -1.87 16 25 C -0.11 -5.25 8.30 22.27 0.18 -5.07 16 26 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 27 C -0.14 -5.08 10.05 22.27 0.22 -4.86 16 28 C -0.13 -4.90 10.05 22.27 0.22 -4.68 16 29 C -0.14 -6.51 9.67 22.27 0.22 -6.29 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.85 7.65 -2.39 -0.02 0.83 16 32 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.18 7.99 -2.39 -0.02 1.16 16 34 H 0.05 1.07 7.78 -2.39 -0.02 1.05 16 35 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 36 H 0.07 1.08 7.94 -2.39 -0.02 1.06 16 37 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.05 1.37 7.77 -2.39 -0.02 1.35 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.64 7.78 -2.39 -0.02 1.62 16 42 H 0.05 1.69 8.05 -2.39 -0.02 1.67 16 43 H 0.41 14.98 8.21 -92.71 -0.76 14.22 16 44 H 0.27 13.73 8.31 -92.71 -0.77 12.96 16 45 H 0.09 4.55 7.89 -2.91 -0.02 4.53 16 46 H 0.14 4.37 8.06 -2.91 -0.02 4.34 16 47 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 48 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 49 H 0.11 4.77 7.96 -2.91 -0.02 4.74 16 Total: -1.00 -62.61 393.95 4.02 -58.60 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: 0.15 Total: 40.73 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 4.07 Total: -33.15 kcal Atomic # 7 Polarization: -76.36 SS G_CDS: -2.18 Total: -78.54 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.05 Total: -30.78 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Total: -62.61 4.02 -58.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526570944.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.592 kcal (2) G-P(sol) polarization free energy of solvation -62.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds