Wall clock time and date at job start Tue Mar 31 2020 11:12:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.53005 * 109.46692 * 2 1
4 4 H 1.09002 * 110.01832 * 53.61065 * 3 2 1
5 5 C 1.54265 * 110.07113 * 292.19102 * 3 2 1
6 6 C 1.54895 * 104.19345 * 217.08299 * 5 3 2
7 7 C 1.54891 * 102.74603 * 37.94472 * 6 5 3
8 8 C 1.53872 * 110.03008 * 174.99995 * 3 2 1
9 9 H 1.09000 * 110.03581 * 238.66722 * 8 3 2
10 10 C 1.53008 * 110.03177 * 0.04940 * 8 3 2
11 11 N 1.46501 * 109.46847 * 184.99777 * 10 8 3
12 12 C 1.34775 * 119.99704 * 180.02562 * 11 10 8
13 13 O 1.21276 * 120.00422 * 0.02562 * 12 11 10
14 14 C 1.50705 * 119.99914 * 180.02562 * 12 11 10
15 15 H 1.09005 * 109.46325 * 299.99574 * 14 12 11
16 16 C 1.50695 * 109.47446 * 59.99678 * 14 12 11
17 17 H 1.07999 * 119.99808 * 235.33659 * 16 14 12
18 18 C 1.37870 * 119.99976 * 55.33581 * 16 14 12
19 19 N 1.31510 * 120.00203 * 1.97019 * 18 16 14
20 20 Si 1.86809 * 119.99930 * 181.96859 * 18 16 14
21 21 H 1.48494 * 109.47007 * 359.97438 * 20 18 16
22 22 H 1.48493 * 109.47013 * 120.00125 * 20 18 16
23 23 H 1.48507 * 109.47018 * 239.99950 * 20 18 16
24 24 C 1.50701 * 109.46974 * 179.97438 * 14 12 11
25 25 C 1.38234 * 120.00125 * 47.22202 * 24 14 12
26 26 C 1.38236 * 120.00120 * 179.97438 * 25 24 14
27 27 C 1.38234 * 119.99846 * 0.27497 * 26 25 24
28 28 C 1.38238 * 119.99771 * 359.51420 * 27 26 25
29 29 C 1.38232 * 119.99771 * 227.19421 * 24 14 12
30 30 H 1.09008 * 109.46907 * 179.97438 * 1 2 3
31 31 H 1.08993 * 109.47165 * 299.99608 * 1 2 3
32 32 H 1.08997 * 109.47241 * 60.00004 * 1 2 3
33 33 H 1.09002 * 109.47328 * 240.00341 * 2 1 3
34 34 H 1.08997 * 109.47241 * 119.99996 * 2 1 3
35 35 H 1.08989 * 110.49108 * 335.75987 * 5 3 2
36 36 H 1.08999 * 110.48659 * 98.41083 * 5 3 2
37 37 H 1.08995 * 110.75623 * 156.25633 * 6 5 3
38 38 H 1.09001 * 110.75646 * 279.63522 * 6 5 3
39 39 H 1.09001 * 110.48686 * 203.37694 * 7 6 5
40 40 H 1.09002 * 110.48944 * 80.73511 * 7 6 5
41 41 H 1.08997 * 109.46875 * 65.00018 * 10 8 3
42 42 H 1.08997 * 109.46966 * 305.00000 * 10 8 3
43 43 H 0.96996 * 120.00060 * 0.02562 * 11 10 8
44 44 H 0.97002 * 120.00438 * 179.97438 * 19 18 16
45 45 H 1.08003 * 120.00145 * 359.97438 * 25 24 14
46 46 H 1.08000 * 119.99825 * 179.97438 * 26 25 24
47 47 H 1.07998 * 120.00072 * 179.72469 * 27 26 25
48 48 H 1.08003 * 119.99749 * 180.27513 * 28 27 26
49 49 H 1.07997 * 120.00490 * 359.97438 * 29 24 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.5914 1.9969 0.8245
5 6 1.7004 2.1241 -1.3416
6 6 2.9287 3.0217 -1.6333
7 6 4.1123 2.1508 -1.1435
8 6 3.5734 1.4595 0.1260
9 1 3.8691 2.0213 1.0120
10 6 4.1082 0.0285 0.2106
11 7 5.5532 0.0605 0.4497
12 6 6.2436 -1.0916 0.5602
13 8 5.6689 -2.1550 0.4613
14 6 7.7300 -1.0587 0.8067
15 1 8.2225 -0.5341 -0.0122
16 6 8.0086 -0.3416 2.1025
17 1 8.6784 0.5056 2.1176
18 6 7.4085 -0.7669 3.2686
19 7 6.6235 -1.8219 3.2573
20 14 7.7106 0.1555 4.8647
21 1 8.6255 1.2973 4.6111
22 1 6.4198 0.6631 5.3950
23 1 8.3272 -0.7612 5.8571
24 6 8.2568 -2.4682 0.8899
25 6 7.8920 -3.3998 -0.0640
26 6 8.3755 -4.6926 0.0120
27 6 9.2194 -5.0553 1.0452
28 6 9.5876 -4.1224 1.9966
29 6 9.1051 -2.8293 1.9198
30 1 -0.3633 -1.0278 -0.0005
31 1 -0.3633 0.5137 0.8900
32 1 -0.3633 0.5138 -0.8899
33 1 1.8934 -0.5138 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 1.5772 1.3792 -2.1276
36 1 0.7997 2.7302 -1.2445
37 1 3.0142 3.2244 -2.7008
38 1 2.8718 3.9505 -1.0657
39 1 4.9716 2.7763 -0.9017
40 1 4.3785 1.4100 -1.8974
41 1 3.9064 -0.4908 -0.7263
42 1 3.6159 -0.4955 1.0298
43 1 6.0130 0.9110 0.5284
44 1 6.2016 -2.1213 4.0778
45 1 7.2291 -3.1177 -0.8687
46 1 8.0902 -5.4206 -0.7330
47 1 9.5937 -6.0664 1.1071
48 1 10.2505 -4.4046 2.8012
49 1 9.3909 -2.1013 2.6646
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001526570946.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:12:31
Heat of formation + Delta-G solvation = -38.834855 kcal
Electronic energy + Delta-G solvation = -27190.810291 eV
Core-core repulsion = 23695.351138 eV
Total energy + Delta-G solvation = -3495.459153 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 315.194 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-39.44635 -38.61325 -37.18466 -33.64430 -33.51820 -33.03615 -30.78447 -29.64734
-29.55564 -27.53265 -27.17411 -24.44758 -23.40679 -22.76911 -21.22399 -20.69291
-20.39129 -19.13225 -18.50499 -16.73500 -16.04890 -15.83736 -15.16896 -14.97407
-14.81575 -14.57114 -14.34764 -14.06154 -13.78660 -13.58097 -13.23214 -12.94108
-12.56648 -12.46366 -12.22494 -12.11771 -12.02436 -11.71060 -11.59805 -11.25932
-11.22164 -11.00102 -10.97950 -10.74035 -10.68869 -10.56802 -10.51495 -10.41362
-10.15677 -10.08413 -10.01026 -9.62196 -9.31561 -8.68108 -8.22853 -7.85194
-7.64368 -7.34853 -6.10293 -4.26392 2.59415 2.65798 3.19953 3.30558
3.31610 4.19844 4.29733 4.44435 4.60447 4.68831 4.77774 5.07869
5.17734 5.18568 5.27135 5.34805 5.40173 5.60522 5.63864 5.65619
5.69224 5.79200 5.88058 5.89289 5.90831 6.01315 6.04243 6.09345
6.09580 6.17363 6.20501 6.25979 6.27484 6.41682 6.46058 6.55384
6.61465 6.68891 6.72731 6.86604 6.96594 7.18153 7.26185 7.58611
7.65407 7.70012 7.72230 7.84531 8.21253 8.32137 8.67740 8.88997
9.39988 9.79418 10.90022
Molecular weight = 315.19amu
Principal moments of inertia in cm(-1)
A = 0.013507 B = 0.004166 C = 0.003671
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2072.543901 B = 6719.304820 C = 7625.234206
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C -0.126 4.126
3 C -0.082 4.082
4 H 0.070 0.930
5 C -0.117 4.117
6 C -0.126 4.126
7 C -0.118 4.118
8 C -0.101 4.101
9 H 0.076 0.924
10 C 0.134 3.866
11 N -0.737 5.737
12 C 0.550 3.450
13 O -0.550 6.550
14 C 0.055 3.945
15 H 0.055 0.945
16 C -0.539 4.539
17 H 0.066 0.934
18 C 0.075 3.925
19 N -0.841 5.841
20 Si 0.884 3.116
21 H -0.271 1.271
22 H -0.284 1.284
23 H -0.282 1.282
24 C -0.013 4.013
25 C -0.100 4.100
26 C -0.145 4.145
27 C -0.145 4.145
28 C -0.148 4.148
29 C -0.065 4.065
30 H 0.051 0.949
31 H 0.050 0.950
32 H 0.051 0.949
33 H 0.066 0.934
34 H 0.071 0.929
35 H 0.065 0.935
36 H 0.060 0.940
37 H 0.062 0.938
38 H 0.063 0.937
39 H 0.065 0.935
40 H 0.068 0.932
41 H 0.054 0.946
42 H 0.060 0.940
43 H 0.394 0.606
44 H 0.263 0.737
45 H 0.107 0.893
46 H 0.100 0.900
47 H 0.099 0.901
48 H 0.101 0.899
49 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.221 6.592 -7.370 11.682
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.163 4.163
3 C -0.101 4.101
4 H 0.088 0.912
5 C -0.155 4.155
6 C -0.163 4.163
7 C -0.156 4.156
8 C -0.120 4.120
9 H 0.094 0.906
10 C 0.010 3.990
11 N -0.389 5.389
12 C 0.339 3.661
13 O -0.427 6.427
14 C 0.034 3.966
15 H 0.073 0.927
16 C -0.577 4.577
17 H 0.084 0.916
18 C -0.133 4.133
19 N -0.473 5.473
20 Si 0.711 3.289
21 H -0.195 1.195
22 H -0.210 1.210
23 H -0.208 1.208
24 C -0.014 4.014
25 C -0.118 4.118
26 C -0.163 4.163
27 C -0.164 4.164
28 C -0.167 4.167
29 C -0.083 4.083
30 H 0.070 0.930
31 H 0.069 0.931
32 H 0.070 0.930
33 H 0.085 0.915
34 H 0.090 0.910
35 H 0.084 0.916
36 H 0.078 0.922
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.084 0.916
40 H 0.087 0.913
41 H 0.072 0.928
42 H 0.078 0.922
43 H 0.227 0.773
44 H 0.074 0.926
45 H 0.125 0.875
46 H 0.118 0.882
47 H 0.117 0.883
48 H 0.119 0.881
49 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -6.779 5.657 -7.315 11.465
hybrid contribution 0.052 0.718 1.342 1.523
sum -6.727 6.374 -5.973 11.025
Atomic orbital electron populations
1.21797 0.96393 1.01316 1.01317 1.21797 0.95248 0.96279 1.03000
1.21748 0.94510 0.96221 0.97644 0.91183 1.22444 0.97563 0.98397
0.97087 1.22491 0.95207 0.98163 1.00447 1.22439 0.97516 0.98565
0.97039 1.22040 0.94734 0.96498 0.98700 0.90586 1.21343 0.82477
0.94731 1.00454 1.45831 1.07209 1.09500 1.76396 1.20943 0.90655
0.82323 0.72192 1.90527 1.71771 1.30224 1.50132 1.17897 0.89004
0.91762 0.97977 0.92700 1.20720 1.30212 1.15948 0.90784 0.91564
1.25044 0.94798 0.94531 0.98951 1.70087 1.27819 1.21704 1.27724
0.86650 0.78141 0.80131 0.83933 1.19520 1.21017 1.20837 1.19822
0.93372 0.95740 0.92440 1.20969 0.98015 0.93288 0.99533 1.20817
1.00063 0.96431 0.99002 1.20762 1.00807 0.98187 0.96595 1.20987
1.02053 0.94640 0.98988 1.21142 0.95343 0.94902 0.96933 0.92998
0.93085 0.93004 0.91545 0.91018 0.91585 0.92153 0.91925 0.91785
0.91626 0.91322 0.92829 0.92208 0.77337 0.92645 0.87541 0.88163
0.88268 0.88105 0.85493
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.57 9.77 37.16 0.36 -1.21 16
2 C -0.13 -1.55 4.12 -26.73 -0.11 -1.66 16
3 C -0.08 -0.95 2.93 -89.50 -0.26 -1.21 16
4 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16
5 C -0.12 -1.17 5.54 -25.07 -0.14 -1.31 16
6 C -0.13 -1.24 6.91 -24.73 -0.17 -1.41 16
7 C -0.12 -1.38 6.08 -25.07 -0.15 -1.53 16
8 C -0.10 -1.34 2.96 -89.50 -0.27 -1.60 16
9 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16
10 C 0.13 2.29 3.79 -4.04 -0.02 2.28 16
11 N -0.74 -14.44 5.30 -60.29 -0.32 -14.76 16
12 C 0.55 12.99 5.45 -10.98 -0.06 12.93 16
13 O -0.55 -14.71 13.95 5.56 0.08 -14.63 16
14 C 0.05 1.29 2.78 -94.07 -0.26 1.03 16
15 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16
16 C -0.54 -13.14 7.12 -34.45 -0.25 -13.38 16
17 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16
18 C 0.07 1.89 3.99 -17.82 -0.07 1.82 16
19 N -0.84 -23.04 10.89 55.43 0.60 -22.44 16
20 Si 0.88 19.87 29.54 -169.99 -5.02 14.84 16
21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16
22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16
23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16
24 C -0.01 -0.31 4.52 -104.62 -0.47 -0.78 16
25 C -0.10 -2.30 8.21 -39.58 -0.33 -2.62 16
26 C -0.14 -3.03 10.05 -39.58 -0.40 -3.43 16
27 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16
28 C -0.15 -3.16 10.05 -39.58 -0.40 -3.56 16
29 C -0.07 -1.55 8.20 -39.58 -0.32 -1.87 16
30 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16
31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
32 H 0.05 0.48 7.51 -51.93 -0.39 0.09 16
33 H 0.07 0.85 7.05 -51.93 -0.37 0.49 16
34 H 0.07 1.02 6.30 -51.93 -0.33 0.69 16
35 H 0.07 0.67 7.76 -51.94 -0.40 0.26 16
36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16
37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16
40 H 0.07 0.85 7.76 -51.93 -0.40 0.45 16
41 H 0.05 0.93 7.04 -51.93 -0.37 0.57 16
42 H 0.06 1.17 6.29 -51.93 -0.33 0.84 16
43 H 0.39 7.07 8.24 -40.82 -0.34 6.73 16
44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
45 H 0.11 2.43 7.01 -52.48 -0.37 2.06 16
46 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16
47 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16
48 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16
49 H 0.13 3.10 6.02 -52.49 -0.32 2.78 16
LS Contribution 378.05 15.07 5.70 5.70
Total: -1.00 -29.14 378.05 -10.89 -40.03
By element:
Atomic # 1 Polarization: 20.33 SS G_CDS: -8.22 Total: 12.11 kcal
Atomic # 6 Polarization: -17.14 SS G_CDS: -3.70 Total: -20.84 kcal
Atomic # 7 Polarization: -37.49 SS G_CDS: 0.28 Total: -37.20 kcal
Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal
Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -29.14 -10.89 -40.03 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001526570946.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.191 kcal
(2) G-P(sol) polarization free energy of solvation -29.139 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.947 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal
(6) G-S(sol) free energy of system = (1) + (5) -38.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds