Wall clock time and date at job start Tue Mar 31 2020 11:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46692 * 2 1 4 4 H 1.09002 * 110.01832 * 53.61065 * 3 2 1 5 5 C 1.54265 * 110.07113 * 292.19102 * 3 2 1 6 6 C 1.54895 * 104.19345 * 217.08299 * 5 3 2 7 7 C 1.54891 * 102.74603 * 37.94472 * 6 5 3 8 8 C 1.53872 * 110.03008 * 174.99995 * 3 2 1 9 9 H 1.09000 * 110.03581 * 238.66722 * 8 3 2 10 10 C 1.53008 * 110.03177 * 0.04940 * 8 3 2 11 11 N 1.46501 * 109.46847 * 184.99777 * 10 8 3 12 12 C 1.34775 * 119.99704 * 180.02562 * 11 10 8 13 13 O 1.21276 * 120.00422 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99914 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.46325 * 299.99574 * 14 12 11 16 16 C 1.50695 * 109.47446 * 59.99678 * 14 12 11 17 17 H 1.07999 * 119.99808 * 235.33659 * 16 14 12 18 18 C 1.37870 * 119.99976 * 55.33581 * 16 14 12 19 19 N 1.31510 * 120.00203 * 1.97019 * 18 16 14 20 20 Si 1.86809 * 119.99930 * 181.96859 * 18 16 14 21 21 H 1.48494 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47013 * 120.00125 * 20 18 16 23 23 H 1.48507 * 109.47018 * 239.99950 * 20 18 16 24 24 C 1.50701 * 109.46974 * 179.97438 * 14 12 11 25 25 C 1.38234 * 120.00125 * 47.22202 * 24 14 12 26 26 C 1.38236 * 120.00120 * 179.97438 * 25 24 14 27 27 C 1.38234 * 119.99846 * 0.27497 * 26 25 24 28 28 C 1.38238 * 119.99771 * 359.51420 * 27 26 25 29 29 C 1.38232 * 119.99771 * 227.19421 * 24 14 12 30 30 H 1.09008 * 109.46907 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47165 * 299.99608 * 1 2 3 32 32 H 1.08997 * 109.47241 * 60.00004 * 1 2 3 33 33 H 1.09002 * 109.47328 * 240.00341 * 2 1 3 34 34 H 1.08997 * 109.47241 * 119.99996 * 2 1 3 35 35 H 1.08989 * 110.49108 * 335.75987 * 5 3 2 36 36 H 1.08999 * 110.48659 * 98.41083 * 5 3 2 37 37 H 1.08995 * 110.75623 * 156.25633 * 6 5 3 38 38 H 1.09001 * 110.75646 * 279.63522 * 6 5 3 39 39 H 1.09001 * 110.48686 * 203.37694 * 7 6 5 40 40 H 1.09002 * 110.48944 * 80.73511 * 7 6 5 41 41 H 1.08997 * 109.46875 * 65.00018 * 10 8 3 42 42 H 1.08997 * 109.46966 * 305.00000 * 10 8 3 43 43 H 0.96996 * 120.00060 * 0.02562 * 11 10 8 44 44 H 0.97002 * 120.00438 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.00145 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99825 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00072 * 179.72469 * 27 26 25 48 48 H 1.08003 * 119.99749 * 180.27513 * 28 27 26 49 49 H 1.07997 * 120.00490 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5914 1.9969 0.8245 5 6 1.7004 2.1241 -1.3416 6 6 2.9287 3.0217 -1.6333 7 6 4.1123 2.1508 -1.1435 8 6 3.5734 1.4595 0.1260 9 1 3.8691 2.0213 1.0120 10 6 4.1082 0.0285 0.2106 11 7 5.5532 0.0605 0.4497 12 6 6.2436 -1.0916 0.5602 13 8 5.6689 -2.1550 0.4613 14 6 7.7300 -1.0587 0.8067 15 1 8.2225 -0.5341 -0.0122 16 6 8.0086 -0.3416 2.1025 17 1 8.6784 0.5056 2.1176 18 6 7.4085 -0.7669 3.2686 19 7 6.6235 -1.8219 3.2573 20 14 7.7106 0.1555 4.8647 21 1 8.6255 1.2973 4.6111 22 1 6.4198 0.6631 5.3950 23 1 8.3272 -0.7612 5.8571 24 6 8.2568 -2.4682 0.8899 25 6 7.8920 -3.3998 -0.0640 26 6 8.3755 -4.6926 0.0120 27 6 9.2194 -5.0553 1.0452 28 6 9.5876 -4.1224 1.9966 29 6 9.1051 -2.8293 1.9198 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5772 1.3792 -2.1276 36 1 0.7997 2.7302 -1.2445 37 1 3.0142 3.2244 -2.7008 38 1 2.8718 3.9505 -1.0657 39 1 4.9716 2.7763 -0.9017 40 1 4.3785 1.4100 -1.8974 41 1 3.9064 -0.4908 -0.7263 42 1 3.6159 -0.4955 1.0298 43 1 6.0130 0.9110 0.5284 44 1 6.2016 -2.1213 4.0778 45 1 7.2291 -3.1177 -0.8687 46 1 8.0902 -5.4206 -0.7330 47 1 9.5937 -6.0664 1.1071 48 1 10.2505 -4.4046 2.8012 49 1 9.3909 -2.1013 2.6646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001526570946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:31 Heat of formation + Delta-G solvation = -38.834855 kcal Electronic energy + Delta-G solvation = -27190.810291 eV Core-core repulsion = 23695.351138 eV Total energy + Delta-G solvation = -3495.459153 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.44635 -38.61325 -37.18466 -33.64430 -33.51820 -33.03615 -30.78447 -29.64734 -29.55564 -27.53265 -27.17411 -24.44758 -23.40679 -22.76911 -21.22399 -20.69291 -20.39129 -19.13225 -18.50499 -16.73500 -16.04890 -15.83736 -15.16896 -14.97407 -14.81575 -14.57114 -14.34764 -14.06154 -13.78660 -13.58097 -13.23214 -12.94108 -12.56648 -12.46366 -12.22494 -12.11771 -12.02436 -11.71060 -11.59805 -11.25932 -11.22164 -11.00102 -10.97950 -10.74035 -10.68869 -10.56802 -10.51495 -10.41362 -10.15677 -10.08413 -10.01026 -9.62196 -9.31561 -8.68108 -8.22853 -7.85194 -7.64368 -7.34853 -6.10293 -4.26392 2.59415 2.65798 3.19953 3.30558 3.31610 4.19844 4.29733 4.44435 4.60447 4.68831 4.77774 5.07869 5.17734 5.18568 5.27135 5.34805 5.40173 5.60522 5.63864 5.65619 5.69224 5.79200 5.88058 5.89289 5.90831 6.01315 6.04243 6.09345 6.09580 6.17363 6.20501 6.25979 6.27484 6.41682 6.46058 6.55384 6.61465 6.68891 6.72731 6.86604 6.96594 7.18153 7.26185 7.58611 7.65407 7.70012 7.72230 7.84531 8.21253 8.32137 8.67740 8.88997 9.39988 9.79418 10.90022 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.004166 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.543901 B = 6719.304820 C = 7625.234206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.082 4.082 4 H 0.070 0.930 5 C -0.117 4.117 6 C -0.126 4.126 7 C -0.118 4.118 8 C -0.101 4.101 9 H 0.076 0.924 10 C 0.134 3.866 11 N -0.737 5.737 12 C 0.550 3.450 13 O -0.550 6.550 14 C 0.055 3.945 15 H 0.055 0.945 16 C -0.539 4.539 17 H 0.066 0.934 18 C 0.075 3.925 19 N -0.841 5.841 20 Si 0.884 3.116 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.013 4.013 25 C -0.100 4.100 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.148 4.148 29 C -0.065 4.065 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.394 0.606 44 H 0.263 0.737 45 H 0.107 0.893 46 H 0.100 0.900 47 H 0.099 0.901 48 H 0.101 0.899 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.221 6.592 -7.370 11.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.101 4.101 4 H 0.088 0.912 5 C -0.155 4.155 6 C -0.163 4.163 7 C -0.156 4.156 8 C -0.120 4.120 9 H 0.094 0.906 10 C 0.010 3.990 11 N -0.389 5.389 12 C 0.339 3.661 13 O -0.427 6.427 14 C 0.034 3.966 15 H 0.073 0.927 16 C -0.577 4.577 17 H 0.084 0.916 18 C -0.133 4.133 19 N -0.473 5.473 20 Si 0.711 3.289 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.208 1.208 24 C -0.014 4.014 25 C -0.118 4.118 26 C -0.163 4.163 27 C -0.164 4.164 28 C -0.167 4.167 29 C -0.083 4.083 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.227 0.773 44 H 0.074 0.926 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.779 5.657 -7.315 11.465 hybrid contribution 0.052 0.718 1.342 1.523 sum -6.727 6.374 -5.973 11.025 Atomic orbital electron populations 1.21797 0.96393 1.01316 1.01317 1.21797 0.95248 0.96279 1.03000 1.21748 0.94510 0.96221 0.97644 0.91183 1.22444 0.97563 0.98397 0.97087 1.22491 0.95207 0.98163 1.00447 1.22439 0.97516 0.98565 0.97039 1.22040 0.94734 0.96498 0.98700 0.90586 1.21343 0.82477 0.94731 1.00454 1.45831 1.07209 1.09500 1.76396 1.20943 0.90655 0.82323 0.72192 1.90527 1.71771 1.30224 1.50132 1.17897 0.89004 0.91762 0.97977 0.92700 1.20720 1.30212 1.15948 0.90784 0.91564 1.25044 0.94798 0.94531 0.98951 1.70087 1.27819 1.21704 1.27724 0.86650 0.78141 0.80131 0.83933 1.19520 1.21017 1.20837 1.19822 0.93372 0.95740 0.92440 1.20969 0.98015 0.93288 0.99533 1.20817 1.00063 0.96431 0.99002 1.20762 1.00807 0.98187 0.96595 1.20987 1.02053 0.94640 0.98988 1.21142 0.95343 0.94902 0.96933 0.92998 0.93085 0.93004 0.91545 0.91018 0.91585 0.92153 0.91925 0.91785 0.91626 0.91322 0.92829 0.92208 0.77337 0.92645 0.87541 0.88163 0.88268 0.88105 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.77 37.16 0.36 -1.21 16 2 C -0.13 -1.55 4.12 -26.73 -0.11 -1.66 16 3 C -0.08 -0.95 2.93 -89.50 -0.26 -1.21 16 4 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.12 -1.17 5.54 -25.07 -0.14 -1.31 16 6 C -0.13 -1.24 6.91 -24.73 -0.17 -1.41 16 7 C -0.12 -1.38 6.08 -25.07 -0.15 -1.53 16 8 C -0.10 -1.34 2.96 -89.50 -0.27 -1.60 16 9 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 10 C 0.13 2.29 3.79 -4.04 -0.02 2.28 16 11 N -0.74 -14.44 5.30 -60.29 -0.32 -14.76 16 12 C 0.55 12.99 5.45 -10.98 -0.06 12.93 16 13 O -0.55 -14.71 13.95 5.56 0.08 -14.63 16 14 C 0.05 1.29 2.78 -94.07 -0.26 1.03 16 15 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 16 C -0.54 -13.14 7.12 -34.45 -0.25 -13.38 16 17 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 18 C 0.07 1.89 3.99 -17.82 -0.07 1.82 16 19 N -0.84 -23.04 10.89 55.43 0.60 -22.44 16 20 Si 0.88 19.87 29.54 -169.99 -5.02 14.84 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C -0.01 -0.31 4.52 -104.62 -0.47 -0.78 16 25 C -0.10 -2.30 8.21 -39.58 -0.33 -2.62 16 26 C -0.14 -3.03 10.05 -39.58 -0.40 -3.43 16 27 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 28 C -0.15 -3.16 10.05 -39.58 -0.40 -3.56 16 29 C -0.07 -1.55 8.20 -39.58 -0.32 -1.87 16 30 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.05 0.48 7.51 -51.93 -0.39 0.09 16 33 H 0.07 0.85 7.05 -51.93 -0.37 0.49 16 34 H 0.07 1.02 6.30 -51.93 -0.33 0.69 16 35 H 0.07 0.67 7.76 -51.94 -0.40 0.26 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.85 7.76 -51.93 -0.40 0.45 16 41 H 0.05 0.93 7.04 -51.93 -0.37 0.57 16 42 H 0.06 1.17 6.29 -51.93 -0.33 0.84 16 43 H 0.39 7.07 8.24 -40.82 -0.34 6.73 16 44 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.11 2.43 7.01 -52.48 -0.37 2.06 16 46 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 47 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 48 H 0.10 1.89 8.06 -52.48 -0.42 1.46 16 49 H 0.13 3.10 6.02 -52.49 -0.32 2.78 16 LS Contribution 378.05 15.07 5.70 5.70 Total: -1.00 -29.14 378.05 -10.89 -40.03 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: -8.22 Total: 12.11 kcal Atomic # 6 Polarization: -17.14 SS G_CDS: -3.70 Total: -20.84 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.28 Total: -37.20 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.08 Total: -14.63 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.14 -10.89 -40.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526570946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.191 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds