Wall clock time and date at job start Tue Mar 31 2020 11:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46692 * 2 1 4 4 H 1.09002 * 110.01832 * 53.61065 * 3 2 1 5 5 C 1.54265 * 110.07113 * 292.19102 * 3 2 1 6 6 C 1.54895 * 104.19345 * 217.08299 * 5 3 2 7 7 C 1.54891 * 102.74603 * 37.94472 * 6 5 3 8 8 C 1.53872 * 110.03008 * 174.99995 * 3 2 1 9 9 H 1.09000 * 110.03581 * 238.66722 * 8 3 2 10 10 C 1.53008 * 110.03177 * 0.04940 * 8 3 2 11 11 N 1.46501 * 109.46847 * 184.99777 * 10 8 3 12 12 C 1.34775 * 119.99704 * 180.02562 * 11 10 8 13 13 O 1.21276 * 120.00422 * 0.02562 * 12 11 10 14 14 C 1.50705 * 119.99914 * 180.02562 * 12 11 10 15 15 H 1.09005 * 109.46325 * 299.99574 * 14 12 11 16 16 C 1.50695 * 109.47446 * 59.99678 * 14 12 11 17 17 H 1.07999 * 119.99808 * 235.33659 * 16 14 12 18 18 C 1.37870 * 119.99976 * 55.33581 * 16 14 12 19 19 N 1.31510 * 120.00203 * 1.97019 * 18 16 14 20 20 Si 1.86809 * 119.99930 * 181.96859 * 18 16 14 21 21 H 1.48494 * 109.47007 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47013 * 120.00125 * 20 18 16 23 23 H 1.48507 * 109.47018 * 239.99950 * 20 18 16 24 24 C 1.50701 * 109.46974 * 179.97438 * 14 12 11 25 25 C 1.38234 * 120.00125 * 47.22202 * 24 14 12 26 26 C 1.38236 * 120.00120 * 179.97438 * 25 24 14 27 27 C 1.38234 * 119.99846 * 0.27497 * 26 25 24 28 28 C 1.38238 * 119.99771 * 359.51420 * 27 26 25 29 29 C 1.38232 * 119.99771 * 227.19421 * 24 14 12 30 30 H 1.09008 * 109.46907 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47165 * 299.99608 * 1 2 3 32 32 H 1.08997 * 109.47241 * 60.00004 * 1 2 3 33 33 H 1.09002 * 109.47328 * 240.00341 * 2 1 3 34 34 H 1.08997 * 109.47241 * 119.99996 * 2 1 3 35 35 H 1.08989 * 110.49108 * 335.75987 * 5 3 2 36 36 H 1.08999 * 110.48659 * 98.41083 * 5 3 2 37 37 H 1.08995 * 110.75623 * 156.25633 * 6 5 3 38 38 H 1.09001 * 110.75646 * 279.63522 * 6 5 3 39 39 H 1.09001 * 110.48686 * 203.37694 * 7 6 5 40 40 H 1.09002 * 110.48944 * 80.73511 * 7 6 5 41 41 H 1.08997 * 109.46875 * 65.00018 * 10 8 3 42 42 H 1.08997 * 109.46966 * 305.00000 * 10 8 3 43 43 H 0.96996 * 120.00060 * 0.02562 * 11 10 8 44 44 H 0.97002 * 120.00438 * 179.97438 * 19 18 16 45 45 H 1.08003 * 120.00145 * 359.97438 * 25 24 14 46 46 H 1.08000 * 119.99825 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00072 * 179.72469 * 27 26 25 48 48 H 1.08003 * 119.99749 * 180.27513 * 28 27 26 49 49 H 1.07997 * 120.00490 * 359.97438 * 29 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5914 1.9969 0.8245 5 6 1.7004 2.1241 -1.3416 6 6 2.9287 3.0217 -1.6333 7 6 4.1123 2.1508 -1.1435 8 6 3.5734 1.4595 0.1260 9 1 3.8691 2.0213 1.0120 10 6 4.1082 0.0285 0.2106 11 7 5.5532 0.0605 0.4497 12 6 6.2436 -1.0916 0.5602 13 8 5.6689 -2.1550 0.4613 14 6 7.7300 -1.0587 0.8067 15 1 8.2225 -0.5341 -0.0122 16 6 8.0086 -0.3416 2.1025 17 1 8.6784 0.5056 2.1176 18 6 7.4085 -0.7669 3.2686 19 7 6.6235 -1.8219 3.2573 20 14 7.7106 0.1555 4.8647 21 1 8.6255 1.2973 4.6111 22 1 6.4198 0.6631 5.3950 23 1 8.3272 -0.7612 5.8571 24 6 8.2568 -2.4682 0.8899 25 6 7.8920 -3.3998 -0.0640 26 6 8.3755 -4.6926 0.0120 27 6 9.2194 -5.0553 1.0452 28 6 9.5876 -4.1224 1.9966 29 6 9.1051 -2.8293 1.9198 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.5772 1.3792 -2.1276 36 1 0.7997 2.7302 -1.2445 37 1 3.0142 3.2244 -2.7008 38 1 2.8718 3.9505 -1.0657 39 1 4.9716 2.7763 -0.9017 40 1 4.3785 1.4100 -1.8974 41 1 3.9064 -0.4908 -0.7263 42 1 3.6159 -0.4955 1.0298 43 1 6.0130 0.9110 0.5284 44 1 6.2016 -2.1213 4.0778 45 1 7.2291 -3.1177 -0.8687 46 1 8.0902 -5.4206 -0.7330 47 1 9.5937 -6.0664 1.1071 48 1 10.2505 -4.4046 2.8012 49 1 9.3909 -2.1013 2.6646 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001526570946.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:12:30 Heat of formation + Delta-G solvation = -52.881966 kcal Electronic energy + Delta-G solvation = -27191.419419 eV Core-core repulsion = 23695.351138 eV Total energy + Delta-G solvation = -3496.068281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.87921 -40.05464 -38.86585 -35.46820 -35.15229 -33.98600 -32.64159 -31.34896 -30.86595 -28.89903 -28.41570 -26.10149 -24.96855 -23.73693 -22.94993 -22.16549 -21.50870 -20.89283 -19.68254 -18.56398 -17.46483 -17.23326 -16.88186 -16.70005 -16.31438 -15.85097 -15.58045 -15.37816 -15.25772 -15.23894 -14.58977 -14.21128 -14.12777 -13.94413 -13.84628 -13.68682 -13.25245 -13.11999 -12.98249 -12.83769 -12.75734 -12.49191 -12.27548 -12.17362 -11.82547 -11.76605 -11.68587 -11.56784 -11.43735 -11.40687 -11.22020 -11.14534 -11.13419 -10.64645 -10.12135 -9.56345 -9.37346 -9.08988 -8.06371 -6.26161 0.88453 0.93791 1.39040 1.44962 1.53226 2.34751 2.47973 2.83953 3.21010 3.36469 3.62906 3.69105 3.77289 4.19765 4.31505 4.34288 4.36019 4.42517 4.45159 4.50594 4.53598 4.56382 4.65742 4.70597 4.76112 4.78351 4.86526 4.91944 4.97324 5.01437 5.04517 5.11728 5.14747 5.17676 5.21473 5.26581 5.27751 5.34807 5.46372 5.48822 5.52761 5.55488 5.58583 5.71104 5.89235 5.93837 5.98830 6.05109 6.43794 6.53731 6.77449 7.14432 7.42709 7.98078 8.92634 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.013507 B = 0.004166 C = 0.003671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.543901 B = 6719.304820 C = 7625.234206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.079 4.079 4 H 0.077 0.923 5 C -0.112 4.112 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.095 4.095 9 H 0.072 0.928 10 C 0.142 3.858 11 N -0.727 5.727 12 C 0.547 3.453 13 O -0.587 6.587 14 C 0.045 3.955 15 H 0.067 0.933 16 C -0.532 4.532 17 H 0.072 0.928 18 C 0.039 3.961 19 N -0.874 5.874 20 Si 0.939 3.061 21 H -0.257 1.257 22 H -0.290 1.290 23 H -0.287 1.287 24 C -0.034 4.034 25 C -0.118 4.118 26 C -0.147 4.147 27 C -0.142 4.142 28 C -0.152 4.152 29 C -0.088 4.088 30 H 0.049 0.951 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.047 0.953 42 H 0.030 0.970 43 H 0.402 0.598 44 H 0.254 0.746 45 H 0.098 0.902 46 H 0.129 0.871 47 H 0.138 0.862 48 H 0.126 0.874 49 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.301 7.617 -7.897 12.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.098 4.098 4 H 0.096 0.904 5 C -0.150 4.150 6 C -0.156 4.156 7 C -0.155 4.155 8 C -0.114 4.114 9 H 0.090 0.910 10 C 0.018 3.982 11 N -0.379 5.379 12 C 0.336 3.664 13 O -0.467 6.467 14 C 0.024 3.976 15 H 0.084 0.916 16 C -0.569 4.569 17 H 0.090 0.910 18 C -0.165 4.165 19 N -0.509 5.509 20 Si 0.766 3.234 21 H -0.181 1.181 22 H -0.216 1.216 23 H -0.214 1.214 24 C -0.035 4.035 25 C -0.137 4.137 26 C -0.165 4.165 27 C -0.160 4.160 28 C -0.170 4.170 29 C -0.106 4.106 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.237 0.763 44 H 0.063 0.937 45 H 0.116 0.884 46 H 0.147 0.853 47 H 0.156 0.844 48 H 0.144 0.856 49 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.845 6.737 -7.855 12.407 hybrid contribution 0.122 0.349 1.465 1.511 sum -6.723 7.086 -6.389 11.672 Atomic orbital electron populations 1.21756 0.94540 1.01625 1.02391 1.21739 0.96897 0.96544 1.01070 1.21756 0.92926 0.95873 0.99284 0.90435 1.22424 0.98476 0.98450 0.95612 1.22474 0.93717 0.97972 1.01416 1.22421 0.98695 0.98610 0.95738 1.22016 0.96167 0.93609 0.99616 0.90986 1.21356 0.80749 0.97281 0.98808 1.45763 1.08256 1.08871 1.74973 1.20995 0.90876 0.82659 0.71834 1.90492 1.72420 1.31730 1.52076 1.18022 0.89230 0.92219 0.98136 0.91558 1.20913 1.29393 1.15552 0.91089 0.91015 1.25579 0.94566 0.94915 1.01439 1.70258 1.29430 1.23534 1.27632 0.85779 0.77724 0.79280 0.80619 1.18093 1.21637 1.21371 1.19935 0.94144 0.96176 0.93278 1.21032 0.98649 0.94460 0.99516 1.21191 0.99444 0.96002 0.99838 1.21175 0.99714 0.99680 0.95382 1.21318 1.01940 0.93865 0.99922 1.21130 0.96534 0.96002 0.96895 0.93166 0.92486 0.91351 0.92607 0.93886 0.91667 0.90251 0.90556 0.90719 0.91103 0.92343 0.93441 0.95140 0.76336 0.93660 0.88410 0.85290 0.84400 0.85591 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.77 71.98 0.70 -2.20 16 2 C -0.12 -3.13 4.12 30.60 0.13 -3.00 16 3 C -0.08 -1.77 2.93 -10.07 -0.03 -1.80 16 4 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 5 C -0.11 -1.97 5.54 31.67 0.18 -1.80 16 6 C -0.12 -2.02 6.91 31.89 0.22 -1.80 16 7 C -0.12 -2.59 6.08 31.67 0.19 -2.40 16 8 C -0.10 -2.51 2.96 -10.07 -0.03 -2.54 16 9 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 10 C 0.14 5.06 3.79 86.38 0.33 5.39 16 11 N -0.73 -29.38 5.30 -463.05 -2.45 -31.83 16 12 C 0.55 26.75 5.45 87.66 0.48 27.23 16 13 O -0.59 -32.80 13.95 -3.02 -0.04 -32.84 16 14 C 0.05 2.18 2.78 -13.03 -0.04 2.14 16 15 H 0.07 2.94 8.14 -2.38 -0.02 2.92 16 16 C -0.53 -26.16 7.12 25.60 0.18 -25.97 16 17 H 0.07 3.38 7.81 -2.91 -0.02 3.36 16 18 C 0.04 2.01 3.99 84.65 0.34 2.34 16 19 N -0.87 -49.23 10.89 21.44 0.23 -49.00 16 20 Si 0.94 41.10 29.54 68.60 2.03 43.13 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 24 C -0.03 -1.69 4.52 -19.87 -0.09 -1.78 16 25 C -0.12 -5.52 8.21 22.27 0.18 -5.34 16 26 C -0.15 -5.95 10.05 22.27 0.22 -5.73 16 27 C -0.14 -5.39 10.05 22.27 0.22 -5.17 16 28 C -0.15 -6.31 10.05 22.27 0.22 -6.09 16 29 C -0.09 -4.18 8.20 22.27 0.18 -4.00 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.14 7.51 -2.39 -0.02 1.12 16 33 H 0.06 1.48 7.05 -2.39 -0.02 1.47 16 34 H 0.04 1.31 6.30 -2.39 -0.02 1.29 16 35 H 0.06 1.18 7.76 -2.39 -0.02 1.16 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.06 1.42 7.76 -2.39 -0.02 1.40 16 41 H 0.05 1.74 7.04 -2.39 -0.02 1.73 16 42 H 0.03 1.27 6.29 -2.39 -0.02 1.26 16 43 H 0.40 14.63 8.24 -92.71 -0.76 13.87 16 44 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 45 H 0.10 4.62 7.01 -2.91 -0.02 4.60 16 46 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 47 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 48 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 49 H 0.11 5.56 6.02 -2.91 -0.02 5.54 16 Total: -1.00 -64.10 378.05 3.52 -60.58 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: 0.16 Total: 42.46 kcal Atomic # 6 Polarization: -36.09 SS G_CDS: 3.59 Total: -32.50 kcal Atomic # 7 Polarization: -78.61 SS G_CDS: -2.22 Total: -80.83 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -0.04 Total: -32.84 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -64.10 3.52 -60.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001526570946.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.701 kcal (2) G-P(sol) polarization free energy of solvation -64.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds