Wall clock time and date at job start Tue Mar 31 2020 11:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47316 * 2 1 4 4 H 1.08995 * 109.47486 * 54.99967 * 3 2 1 5 5 N 1.46495 * 109.47086 * 294.99596 * 3 2 1 6 6 C 1.34780 * 120.00062 * 137.28895 * 5 3 2 7 7 O 1.21280 * 119.99881 * 0.02562 * 6 5 3 8 8 C 1.50703 * 120.00357 * 180.02562 * 6 5 3 9 9 H 1.08997 * 109.46719 * 60.00175 * 8 6 5 10 10 C 1.50700 * 109.47183 * 300.00397 * 8 6 5 11 11 H 1.07999 * 119.99879 * 333.84389 * 10 8 6 12 12 C 1.37879 * 120.00135 * 153.83344 * 10 8 6 13 13 N 1.31517 * 119.99433 * 5.03798 * 12 10 8 14 14 Si 1.86795 * 120.00262 * 185.02946 * 12 10 8 15 15 H 1.48499 * 109.47333 * 60.00387 * 14 12 10 16 16 H 1.48497 * 109.47425 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47283 * 300.00499 * 14 12 10 18 18 C 1.50699 * 109.47172 * 180.02562 * 8 6 5 19 19 C 1.38236 * 120.00021 * 241.71936 * 18 8 6 20 20 C 1.38226 * 120.00165 * 179.97438 * 19 18 8 21 21 C 1.38236 * 119.99841 * 0.02566 * 20 19 18 22 22 C 1.38237 * 120.00202 * 0.25589 * 21 20 19 23 23 C 1.38232 * 119.99495 * 359.48692 * 22 21 20 24 24 C 1.52999 * 109.46960 * 175.00236 * 3 2 1 25 25 H 1.08997 * 115.55765 * 39.62087 * 24 3 2 26 26 C 1.53005 * 117.49834 * 185.29223 * 24 3 2 27 27 C 1.52997 * 60.00274 * 107.48624 * 26 24 3 28 28 C 1.52999 * 117.49903 * 252.51421 * 27 26 24 29 29 C 1.53001 * 117.49995 * 107.48675 * 27 26 24 30 30 H 1.09002 * 109.46864 * 300.00756 * 1 2 3 31 31 H 1.09000 * 109.46749 * 60.00047 * 1 2 3 32 32 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46956 * 239.99785 * 2 1 3 34 34 H 1.09004 * 109.47204 * 120.00109 * 2 1 3 35 35 H 0.96999 * 120.00667 * 317.29708 * 5 3 2 36 36 H 0.97008 * 119.99299 * 179.97438 * 13 12 10 37 37 H 1.07999 * 120.00005 * 0.02562 * 19 18 8 38 38 H 1.07998 * 120.00424 * 179.97438 * 20 19 18 39 39 H 1.08009 * 119.99995 * 179.97438 * 21 20 19 40 40 H 1.07996 * 120.00042 * 179.72778 * 22 21 20 41 41 H 1.08002 * 119.99702 * 180.26389 * 23 22 21 42 42 H 1.09002 * 117.49512 * 214.97630 * 26 24 3 43 43 H 1.09003 * 117.49774 * 359.97048 * 26 24 3 44 44 H 1.08997 * 109.47157 * 128.62227 * 28 27 26 45 45 H 1.09005 * 109.46755 * 248.61809 * 28 27 26 46 46 H 1.08994 * 109.47139 * 8.61739 * 28 27 26 47 47 H 1.09002 * 109.46771 * 351.38487 * 29 27 26 48 48 H 1.09003 * 109.46644 * 111.37695 * 29 27 26 49 49 H 1.09002 * 109.47447 * 231.38334 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8417 5 7 1.6526 2.0974 -1.2518 6 6 1.1813 3.3600 -1.2340 7 8 1.0784 3.9540 -0.1817 8 6 0.7822 4.0336 -2.5217 9 1 -0.0138 3.4621 -2.9990 10 6 1.9730 4.1024 -3.4427 11 1 2.9724 4.1087 -3.0336 12 6 1.7865 4.1572 -4.8077 13 7 0.5713 4.2494 -5.3021 14 14 3.2597 4.1007 -5.9547 15 1 4.0022 2.8319 -5.7448 16 1 2.7940 4.1750 -7.3628 17 1 4.1544 5.2508 -5.6684 18 6 0.2933 5.4286 -2.2283 19 6 -1.0070 5.7840 -2.5348 20 6 -1.4556 7.0634 -2.2653 21 6 -0.6038 7.9875 -1.6897 22 6 0.6982 7.6338 -1.3885 23 6 1.1452 6.3528 -1.6532 24 6 3.5649 1.4442 0.1257 25 1 4.0841 0.6694 -0.4384 26 6 4.2604 2.7995 0.2692 27 6 4.1623 1.8589 1.4719 28 6 3.1891 2.2400 2.5892 29 6 5.4429 1.1539 1.9236 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.7351 1.6224 -2.0935 36 1 0.4401 4.2883 -6.2625 37 1 -1.6725 5.0619 -2.9842 38 1 -2.4713 7.3412 -2.5051 39 1 -0.9542 8.9873 -1.4794 40 1 1.3649 8.3571 -0.9428 41 1 2.1611 6.0752 -1.4139 42 1 5.2372 2.9160 -0.2003 43 1 3.6316 3.6898 0.2735 44 1 2.5404 1.3925 2.8108 45 1 3.7506 2.5112 3.4833 46 1 2.5831 3.0877 2.2697 47 1 6.2317 1.3295 1.1922 48 1 5.7516 1.5470 2.8923 49 1 5.2576 0.0830 2.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536675087.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:50 Heat of formation + Delta-G solvation = -16.125249 kcal Electronic energy + Delta-G solvation = -27427.136817 eV Core-core repulsion = 23932.662427 eV Total energy + Delta-G solvation = -3494.474390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.65429 -38.44422 -37.33797 -34.88082 -33.59405 -31.62819 -30.95217 -29.84728 -29.24725 -27.67868 -27.33661 -25.94856 -23.80016 -21.60853 -21.50848 -21.17014 -20.15371 -19.30190 -18.52958 -16.76641 -16.00648 -15.90732 -15.50902 -15.04381 -14.49855 -14.36916 -14.19055 -13.81626 -13.67601 -13.57091 -13.14213 -13.01934 -12.79910 -12.44644 -12.37069 -12.19649 -12.01751 -11.96186 -11.66987 -11.58445 -11.52615 -11.10004 -11.07518 -10.99511 -10.98632 -10.88999 -10.51962 -10.34884 -10.21489 -9.99365 -9.66804 -9.43341 -9.41232 -8.68653 -8.53774 -8.22261 -7.85231 -7.51753 -6.22895 -4.29793 2.47383 2.49293 3.21994 3.27686 3.29269 3.65677 3.85015 4.28521 4.32794 4.71231 4.91433 4.99859 5.03829 5.14074 5.22058 5.28952 5.37055 5.42873 5.63983 5.68462 5.78096 5.78896 5.86775 5.93135 5.96198 5.97449 6.02811 6.05956 6.08644 6.14027 6.19211 6.20837 6.21803 6.31124 6.41925 6.44661 6.55828 6.56897 6.65993 6.69046 6.91889 7.05999 7.21266 7.33281 7.45349 7.53177 7.67075 7.83634 8.02596 8.13282 8.46284 8.73319 9.29476 9.36937 10.84850 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.010385 B = 0.005102 C = 0.004390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.453135 B = 5486.812574 C = 6376.131402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.165 3.835 4 H 0.098 0.902 5 N -0.720 5.720 6 C 0.531 3.469 7 O -0.567 6.567 8 C 0.055 3.945 9 H 0.078 0.922 10 C -0.514 4.514 11 H 0.062 0.938 12 C 0.074 3.926 13 N -0.875 5.875 14 Si 0.896 3.104 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.276 1.276 18 C -0.005 4.005 19 C -0.111 4.111 20 C -0.134 4.134 21 C -0.150 4.150 22 C -0.137 4.137 23 C -0.083 4.083 24 C -0.154 4.154 25 H 0.098 0.902 26 C -0.157 4.157 27 C -0.129 4.129 28 C -0.116 4.116 29 C -0.111 4.111 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.402 0.598 36 H 0.266 0.734 37 H 0.111 0.889 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.108 0.892 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.067 0.933 47 H 0.054 0.946 48 H 0.056 0.944 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.784 -6.279 9.425 11.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.059 3.941 4 H 0.116 0.884 5 N -0.370 5.370 6 C 0.321 3.679 7 O -0.446 6.446 8 C 0.034 3.966 9 H 0.096 0.904 10 C -0.552 4.552 11 H 0.081 0.919 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.723 3.277 15 H -0.200 1.200 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.006 4.006 19 C -0.130 4.130 20 C -0.152 4.152 21 C -0.168 4.168 22 C -0.155 4.155 23 C -0.102 4.102 24 C -0.174 4.174 25 H 0.117 0.883 26 C -0.194 4.194 27 C -0.129 4.129 28 C -0.173 4.173 29 C -0.169 4.169 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.120 0.880 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.086 0.914 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.580 -5.844 9.985 11.854 hybrid contribution 0.930 -0.143 -1.397 1.685 sum 3.510 -5.987 8.588 11.042 Atomic orbital electron populations 1.21735 0.95531 1.00999 1.02500 1.21780 0.96321 0.96227 1.02110 1.20511 0.90972 0.92889 0.89709 0.88394 1.45923 1.66629 1.15505 1.08958 1.21497 0.74153 0.80444 0.91797 1.90561 1.55908 1.64346 1.33825 1.18055 0.99048 0.89795 0.89709 0.90411 1.20635 0.91134 1.53332 0.90053 0.91942 1.24951 0.95911 0.94018 0.98249 1.69934 1.20406 1.47482 1.13204 0.86582 0.82647 0.78843 0.79589 1.20003 1.21194 1.20108 1.19967 0.91714 0.97033 0.91870 1.20936 0.95908 0.96001 1.00128 1.20881 0.98773 0.94341 1.01210 1.20767 0.94569 0.98578 1.02934 1.20917 0.95762 0.96577 1.02220 1.20770 0.99239 0.92462 0.97694 1.22840 0.95827 0.99217 0.99477 0.88350 1.23169 1.01606 0.94571 1.00061 1.21551 0.97914 1.03621 0.89834 1.21363 0.97998 1.01530 0.96431 1.21327 0.95043 0.99600 1.00887 0.92953 0.92082 0.93132 0.91778 0.91338 0.76327 0.92440 0.87124 0.87754 0.87910 0.87818 0.87371 0.89520 0.88002 0.92604 0.92717 0.91410 0.92739 0.92454 0.92596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.80 37.16 0.36 -1.51 16 2 C -0.13 -1.54 5.58 -26.73 -0.15 -1.69 16 3 C 0.16 2.45 2.19 -67.93 -0.15 2.30 16 4 H 0.10 1.64 5.02 -51.93 -0.26 1.38 16 5 N -0.72 -12.64 4.26 -53.81 -0.23 -12.87 16 6 C 0.53 11.27 7.00 -10.98 -0.08 11.19 16 7 O -0.57 -13.06 14.17 5.56 0.08 -12.98 16 8 C 0.05 1.28 2.23 -94.07 -0.21 1.07 16 9 H 0.08 1.93 7.40 -51.93 -0.38 1.54 16 10 C -0.51 -12.70 7.65 -34.44 -0.26 -12.96 16 11 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 12 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 13 N -0.87 -23.09 12.99 55.43 0.72 -22.37 16 14 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 15 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 16 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.00 -0.11 4.36 -104.63 -0.46 -0.57 16 19 C -0.11 -2.50 9.67 -39.59 -0.38 -2.88 16 20 C -0.13 -2.68 10.05 -39.59 -0.40 -3.07 16 21 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 22 C -0.14 -2.78 10.05 -39.58 -0.40 -3.18 16 23 C -0.08 -1.91 8.09 -39.59 -0.32 -2.23 16 24 C -0.15 -2.16 5.03 -90.61 -0.46 -2.62 16 25 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 26 C -0.16 -2.42 9.50 -26.73 -0.25 -2.67 16 27 C -0.13 -1.66 2.70 -154.51 -0.42 -2.08 16 28 C -0.12 -1.48 8.37 37.16 0.31 -1.17 16 29 C -0.11 -1.18 9.85 37.16 0.37 -0.81 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.85 7.75 -51.93 -0.40 0.45 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 6.88 8.67 -40.82 -0.35 6.53 16 36 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 37 H 0.11 2.42 7.95 -52.49 -0.42 2.00 16 38 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 40 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.11 2.51 8.02 -52.49 -0.42 2.09 16 42 H 0.09 1.27 8.05 -51.93 -0.42 0.85 16 43 H 0.10 1.88 7.55 -51.93 -0.39 1.49 16 44 H 0.05 0.65 8.09 -51.93 -0.42 0.23 16 45 H 0.05 0.61 7.92 -51.93 -0.41 0.20 16 46 H 0.07 1.02 7.33 -51.93 -0.38 0.64 16 47 H 0.05 0.57 7.90 -51.93 -0.41 0.16 16 48 H 0.06 0.55 7.92 -51.93 -0.41 0.14 16 49 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 398.61 15.07 6.01 6.01 Total: -1.00 -27.51 398.61 -10.26 -37.77 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: -8.43 Total: 13.83 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: -3.38 Total: -24.38 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.49 Total: -35.23 kcal Atomic # 8 Polarization: -13.06 SS G_CDS: 0.08 Total: -12.98 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -27.51 -10.26 -37.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536675087.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.646 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds