Wall clock time and date at job start Tue Mar 31 2020 12:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46902 * 2 1 4 4 C 1.52993 * 109.47732 * 239.99765 * 2 1 3 5 5 C 1.53001 * 109.46793 * 300.00055 * 4 2 1 6 6 C 1.52995 * 109.47255 * 299.99447 * 5 4 2 7 7 C 1.53007 * 109.46873 * 60.00386 * 6 5 4 8 8 H 1.08996 * 109.46879 * 59.99646 * 7 6 5 9 9 C 1.52995 * 109.46873 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47117 * 294.99596 * 9 7 6 11 11 C 1.34779 * 119.99796 * 180.02562 * 10 9 7 12 12 O 1.21608 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.47436 * 119.99894 * 180.02562 * 11 10 9 14 14 C 1.39230 * 120.27950 * 354.02994 * 13 11 10 15 15 C 1.38220 * 120.08772 * 180.02562 * 14 13 11 16 16 C 1.38830 * 120.67999 * 359.97438 * 15 14 13 17 17 C 1.37593 * 120.56649 * 0.02562 * 16 15 14 18 18 C 1.40707 * 119.88540 * 359.97438 * 17 16 15 19 19 C 1.40895 * 120.32921 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99504 * 143.86566 * 19 18 17 21 21 C 1.40273 * 120.00206 * 323.87165 * 19 18 17 22 22 N 1.30628 * 119.99768 * 350.04876 * 21 19 18 23 23 Si 1.86800 * 120.00092 * 170.04468 * 21 19 18 24 24 H 1.48495 * 109.47081 * 89.99935 * 23 21 19 25 25 H 1.48492 * 109.47133 * 210.00426 * 23 21 19 26 26 H 1.48505 * 109.46899 * 330.00259 * 23 21 19 27 27 C 1.53001 * 109.46865 * 299.99853 * 7 6 5 28 28 H 1.09006 * 109.47354 * 300.00125 * 27 7 6 29 29 C 1.52998 * 109.46868 * 180.02562 * 27 7 6 30 30 H 1.08991 * 109.47573 * 300.00553 * 1 2 3 31 31 H 1.09003 * 109.46700 * 60.00643 * 1 2 3 32 32 H 1.08995 * 109.46880 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47361 * 59.99997 * 4 2 1 34 34 H 1.08999 * 109.47781 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.47202 * 60.00234 * 5 4 2 36 36 H 1.09005 * 109.46717 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47238 * 300.00786 * 6 5 4 38 38 H 1.09001 * 109.47074 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.46913 * 174.99969 * 9 7 6 40 40 H 1.08995 * 109.47626 * 55.00044 * 9 7 6 41 41 H 0.96998 * 119.99948 * 0.02562 * 10 9 7 42 42 H 1.07994 * 119.95840 * 359.97438 * 14 13 11 43 43 H 1.08005 * 119.66289 * 180.02562 * 15 14 13 44 44 H 1.07999 * 119.71905 * 180.28390 * 16 15 14 45 45 H 1.08000 * 120.05872 * 180.02562 * 17 16 15 46 46 H 0.97001 * 120.00027 * 180.02562 * 22 21 19 47 47 H 1.08989 * 109.47581 * 59.99942 * 29 27 7 48 48 H 1.09001 * 109.47012 * 180.02562 * 29 27 7 49 49 H 1.09002 * 109.47109 * 299.99585 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5302 -2.1638 -1.2490 6 6 2.0401 -2.8849 0.0002 7 6 1.5300 -2.1636 1.2494 8 1 0.4401 -2.1637 1.2493 9 6 2.0395 -2.8852 2.4986 10 7 1.4548 -4.2270 2.5601 11 6 1.7625 -5.0500 3.5822 12 8 2.5250 -4.6784 4.4536 13 6 1.1746 -6.4006 3.6437 14 6 0.2075 -6.7881 2.7201 15 6 -0.3414 -8.0551 2.7818 16 6 0.0614 -8.9548 3.7594 17 6 1.0150 -8.6007 4.6859 18 6 1.5896 -7.3170 4.6451 19 6 2.5665 -6.9444 5.5896 20 1 3.3875 -6.3078 5.2947 21 6 2.4727 -7.4005 6.9128 22 7 1.3885 -8.0044 7.3202 23 14 3.8984 -7.1442 8.0923 24 1 3.7351 -5.8442 8.7911 25 1 3.9189 -8.2436 9.0903 26 1 5.1746 -7.1411 7.3329 27 6 2.0400 -0.7211 1.2493 28 1 3.1301 -0.7211 1.2494 29 6 1.5304 0.0000 2.4988 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6769 -0.2075 -2.1392 34 1 3.1301 -0.7208 -1.2493 35 1 0.4402 -2.1638 -1.2492 36 1 1.8932 -2.6775 -2.1392 37 1 3.1301 -2.8848 0.0003 38 1 1.6764 -3.9125 0.0005 39 1 1.7511 -2.3223 3.3863 40 1 3.1257 -2.9638 2.4553 41 1 0.8464 -4.5232 1.8652 42 1 -0.1148 -6.0975 1.9549 43 1 -1.0908 -8.3486 2.0615 44 1 -0.3745 -9.9424 3.7904 45 1 1.3226 -9.3073 5.4426 46 1 1.3234 -8.3195 8.2353 47 1 1.8940 -0.5138 3.3886 48 1 1.8934 1.0278 2.4986 49 1 0.4404 0.0000 2.4992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568333312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:40 Heat of formation + Delta-G solvation = -50.984249 kcal Electronic energy + Delta-G solvation = -26736.253076 eV Core-core repulsion = 23240.267086 eV Total energy + Delta-G solvation = -3495.985990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.04430 -38.67589 -36.74413 -34.52661 -33.61450 -32.94872 -31.67304 -29.92186 -29.47519 -27.78521 -26.34986 -25.48234 -24.74795 -22.28076 -21.51575 -21.06093 -20.59549 -19.41523 -18.46815 -17.49973 -16.40331 -15.49682 -15.27739 -15.25196 -15.00428 -14.66577 -14.22577 -14.13183 -14.02806 -13.55630 -13.42088 -13.02812 -12.77584 -12.67124 -12.55672 -12.16410 -12.06794 -11.95586 -11.73239 -11.65190 -11.54406 -11.34399 -11.08796 -11.06486 -10.89739 -10.74762 -10.67794 -10.50157 -10.28697 -10.06720 -10.00490 -9.95274 -9.63207 -9.21878 -8.39560 -8.25009 -7.56472 -7.31201 -6.76173 -4.34533 2.39374 2.83557 3.12394 3.19854 3.25614 4.00918 4.02192 4.21746 4.51466 4.52579 4.59383 4.72316 4.94888 5.03366 5.15331 5.21432 5.26703 5.34271 5.43683 5.47627 5.55865 5.63422 5.68674 5.70696 5.81321 5.82392 5.88952 5.94927 5.98562 6.01220 6.04910 6.11651 6.15129 6.17687 6.21835 6.30199 6.31563 6.40001 6.51015 6.65635 6.96461 7.12636 7.20939 7.29065 7.48005 7.64011 7.89778 8.01104 8.19936 8.44619 8.69954 8.84791 8.93303 9.47164 10.20614 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.003402 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.178842 B = 8228.491452 C = 9380.792400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.085 4.085 3 H 0.067 0.933 4 C -0.114 4.114 5 C -0.121 4.121 6 C -0.115 4.115 7 C -0.094 4.094 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.748 5.748 11 C 0.563 3.437 12 O -0.538 6.538 13 C -0.259 4.259 14 C -0.058 4.058 15 C -0.245 4.245 16 C -0.095 4.095 17 C -0.148 4.148 18 C 0.148 3.852 19 C -0.418 4.418 20 H 0.103 0.897 21 C 0.071 3.929 22 N -0.795 5.795 23 Si 0.916 3.084 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.260 1.260 27 C -0.077 4.077 28 H 0.071 0.929 29 C -0.155 4.155 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.057 0.943 41 H 0.390 0.610 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.114 0.886 46 H 0.281 0.719 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.028 11.945 -13.003 17.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.112 4.112 8 H 0.096 0.904 9 C 0.003 3.997 10 N -0.403 5.403 11 C 0.357 3.643 12 O -0.416 6.416 13 C -0.264 4.264 14 C -0.077 4.077 15 C -0.264 4.264 16 C -0.114 4.114 17 C -0.167 4.167 18 C 0.144 3.856 19 C -0.446 4.446 20 H 0.120 0.880 21 C -0.147 4.147 22 N -0.421 5.421 23 Si 0.741 3.259 24 H -0.194 1.194 25 H -0.204 1.204 26 H -0.184 1.184 27 C -0.096 4.096 28 H 0.089 0.911 29 C -0.212 4.212 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.225 0.775 42 H 0.107 0.893 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.559 12.121 -12.136 17.162 hybrid contribution 0.050 -0.048 0.243 0.253 sum -0.509 12.073 -11.893 16.955 Atomic orbital electron populations 1.22000 0.95438 1.02265 1.01344 1.21098 0.95945 0.98799 0.94462 0.91476 1.21566 1.00505 0.95818 0.97295 1.21572 1.00961 0.95461 0.97820 1.21595 1.01023 0.99004 0.93627 1.21450 1.00952 0.94429 0.94416 0.90446 1.21262 0.97902 0.83576 0.96953 1.46036 1.51108 1.15118 1.27991 1.18409 0.80678 0.84939 0.80290 1.90679 1.36394 1.76501 1.38073 1.19515 1.06706 0.93833 1.06317 1.20647 0.95524 0.95304 0.96195 1.20280 1.06925 0.95807 1.03434 1.20788 0.97437 0.97600 0.95604 1.21306 0.99753 0.96629 0.98990 1.17469 0.89250 0.89446 0.89420 1.20070 1.08183 1.23630 0.92750 0.87973 1.26075 0.96402 0.92466 0.99785 1.69714 1.25644 1.28354 1.18376 0.86176 0.81846 0.78599 0.79324 1.19354 1.20355 1.18355 1.21064 1.00257 0.93754 0.94520 0.91072 1.21992 1.01496 0.99931 0.97809 0.92465 0.93193 0.91925 0.92341 0.92108 0.91743 0.92257 0.91838 0.91685 0.91905 0.92457 0.77547 0.89328 0.89134 0.89103 0.86811 0.90788 0.91903 0.92936 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.15 37.16 0.30 -0.95 16 2 C -0.08 -0.71 2.72 -90.62 -0.25 -0.96 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.93 5.45 -26.73 -0.15 -1.08 16 5 C -0.12 -1.06 5.65 -26.73 -0.15 -1.21 16 6 C -0.11 -1.21 5.08 -26.73 -0.14 -1.35 16 7 C -0.09 -1.04 1.48 -90.62 -0.13 -1.18 16 8 H 0.08 0.86 6.43 -51.93 -0.33 0.53 16 9 C 0.13 1.92 4.85 -4.05 -0.02 1.90 16 10 N -0.75 -13.26 5.23 -61.39 -0.32 -13.58 16 11 C 0.56 13.17 7.72 -12.51 -0.10 13.07 16 12 O -0.54 -14.38 13.64 5.27 0.07 -14.31 16 13 C -0.26 -6.37 5.92 -104.36 -0.62 -6.99 16 14 C -0.06 -1.24 9.52 -39.22 -0.37 -1.61 16 15 C -0.25 -5.22 10.03 -39.37 -0.39 -5.62 16 16 C -0.10 -2.16 10.01 -39.60 -0.40 -2.56 16 17 C -0.15 -3.77 8.62 -38.89 -0.34 -4.11 16 18 C 0.15 4.01 5.47 -106.54 -0.58 3.43 16 19 C -0.42 -11.64 7.59 -37.81 -0.29 -11.92 16 20 H 0.10 2.95 6.05 -52.49 -0.32 2.63 16 21 C 0.07 1.84 5.23 -17.30 -0.09 1.75 16 22 N -0.80 -20.97 11.33 55.56 0.63 -20.34 16 23 Si 0.92 19.98 29.57 -169.99 -5.03 14.95 16 24 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 26 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 27 C -0.08 -0.75 2.02 -90.62 -0.18 -0.94 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 C -0.16 -1.54 8.50 37.16 0.32 -1.23 16 30 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.54 4.81 -51.93 -0.25 0.29 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.56 6.43 -51.93 -0.33 0.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.73 7.18 -51.93 -0.37 0.36 16 39 H 0.06 1.02 6.17 -51.93 -0.32 0.70 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.39 6.03 5.72 -40.82 -0.23 5.79 16 42 H 0.09 1.57 6.44 -52.49 -0.34 1.23 16 43 H 0.09 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 45 H 0.11 2.96 6.78 -52.49 -0.36 2.61 16 46 H 0.28 6.75 8.29 -40.82 -0.34 6.41 16 47 H 0.06 0.71 6.32 -51.94 -0.33 0.38 16 48 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.57 6.43 -51.93 -0.33 0.23 16 LS Contribution 367.97 15.07 5.55 5.55 Total: -1.00 -29.58 367.97 -10.31 -39.89 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.64 Total: 9.39 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -3.57 Total: -21.54 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.31 Total: -33.92 kcal Atomic # 8 Polarization: -14.38 SS G_CDS: 0.07 Total: -14.31 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.03 Total: 14.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.58 -10.31 -39.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568333312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.098 kcal (2) G-P(sol) polarization free energy of solvation -29.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds