Wall clock time and date at job start Tue Mar 31 2020 12:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46902 * 2 1 4 4 C 1.52993 * 109.47732 * 239.99765 * 2 1 3 5 5 C 1.53001 * 109.46793 * 300.00055 * 4 2 1 6 6 C 1.52995 * 109.47255 * 299.99447 * 5 4 2 7 7 C 1.53007 * 109.46873 * 60.00386 * 6 5 4 8 8 H 1.08996 * 109.46879 * 59.99646 * 7 6 5 9 9 C 1.52995 * 109.46873 * 179.97438 * 7 6 5 10 10 N 1.46497 * 109.47117 * 294.99596 * 9 7 6 11 11 C 1.34779 * 119.99796 * 180.02562 * 10 9 7 12 12 O 1.21608 * 120.00081 * 0.02562 * 11 10 9 13 13 C 1.47436 * 119.99894 * 180.02562 * 11 10 9 14 14 C 1.39230 * 120.27950 * 354.02994 * 13 11 10 15 15 C 1.38220 * 120.08772 * 180.02562 * 14 13 11 16 16 C 1.38830 * 120.67999 * 359.97438 * 15 14 13 17 17 C 1.37593 * 120.56649 * 0.02562 * 16 15 14 18 18 C 1.40707 * 119.88540 * 359.97438 * 17 16 15 19 19 C 1.40895 * 120.32921 * 179.97438 * 18 17 16 20 20 H 1.08000 * 119.99504 * 143.86566 * 19 18 17 21 21 C 1.40273 * 120.00206 * 323.87165 * 19 18 17 22 22 N 1.30628 * 119.99768 * 350.04876 * 21 19 18 23 23 Si 1.86800 * 120.00092 * 170.04468 * 21 19 18 24 24 H 1.48495 * 109.47081 * 89.99935 * 23 21 19 25 25 H 1.48492 * 109.47133 * 210.00426 * 23 21 19 26 26 H 1.48505 * 109.46899 * 330.00259 * 23 21 19 27 27 C 1.53001 * 109.46865 * 299.99853 * 7 6 5 28 28 H 1.09006 * 109.47354 * 300.00125 * 27 7 6 29 29 C 1.52998 * 109.46868 * 180.02562 * 27 7 6 30 30 H 1.08991 * 109.47573 * 300.00553 * 1 2 3 31 31 H 1.09003 * 109.46700 * 60.00643 * 1 2 3 32 32 H 1.08995 * 109.46880 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47361 * 59.99997 * 4 2 1 34 34 H 1.08999 * 109.47781 * 179.97438 * 4 2 1 35 35 H 1.08996 * 109.47202 * 60.00234 * 5 4 2 36 36 H 1.09005 * 109.46717 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47238 * 300.00786 * 6 5 4 38 38 H 1.09001 * 109.47074 * 179.97438 * 6 5 4 39 39 H 1.08999 * 109.46913 * 174.99969 * 9 7 6 40 40 H 1.08995 * 109.47626 * 55.00044 * 9 7 6 41 41 H 0.96998 * 119.99948 * 0.02562 * 10 9 7 42 42 H 1.07994 * 119.95840 * 359.97438 * 14 13 11 43 43 H 1.08005 * 119.66289 * 180.02562 * 15 14 13 44 44 H 1.07999 * 119.71905 * 180.28390 * 16 15 14 45 45 H 1.08000 * 120.05872 * 180.02562 * 17 16 15 46 46 H 0.97001 * 120.00027 * 180.02562 * 22 21 19 47 47 H 1.08989 * 109.47581 * 59.99942 * 29 27 7 48 48 H 1.09001 * 109.47012 * 180.02562 * 29 27 7 49 49 H 1.09002 * 109.47109 * 299.99585 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2491 5 6 1.5302 -2.1638 -1.2490 6 6 2.0401 -2.8849 0.0002 7 6 1.5300 -2.1636 1.2494 8 1 0.4401 -2.1637 1.2493 9 6 2.0395 -2.8852 2.4986 10 7 1.4548 -4.2270 2.5601 11 6 1.7625 -5.0500 3.5822 12 8 2.5250 -4.6784 4.4536 13 6 1.1746 -6.4006 3.6437 14 6 0.2075 -6.7881 2.7201 15 6 -0.3414 -8.0551 2.7818 16 6 0.0614 -8.9548 3.7594 17 6 1.0150 -8.6007 4.6859 18 6 1.5896 -7.3170 4.6451 19 6 2.5665 -6.9444 5.5896 20 1 3.3875 -6.3078 5.2947 21 6 2.4727 -7.4005 6.9128 22 7 1.3885 -8.0044 7.3202 23 14 3.8984 -7.1442 8.0923 24 1 3.7351 -5.8442 8.7911 25 1 3.9189 -8.2436 9.0903 26 1 5.1746 -7.1411 7.3329 27 6 2.0400 -0.7211 1.2493 28 1 3.1301 -0.7211 1.2494 29 6 1.5304 0.0000 2.4988 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6769 -0.2075 -2.1392 34 1 3.1301 -0.7208 -1.2493 35 1 0.4402 -2.1638 -1.2492 36 1 1.8932 -2.6775 -2.1392 37 1 3.1301 -2.8848 0.0003 38 1 1.6764 -3.9125 0.0005 39 1 1.7511 -2.3223 3.3863 40 1 3.1257 -2.9638 2.4553 41 1 0.8464 -4.5232 1.8652 42 1 -0.1148 -6.0975 1.9549 43 1 -1.0908 -8.3486 2.0615 44 1 -0.3745 -9.9424 3.7904 45 1 1.3226 -9.3073 5.4426 46 1 1.3234 -8.3195 8.2353 47 1 1.8940 -0.5138 3.3886 48 1 1.8934 1.0278 2.4986 49 1 0.4404 0.0000 2.4992 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568333312.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:39 Heat of formation + Delta-G solvation = -66.016316 kcal Electronic energy + Delta-G solvation = -26736.904915 eV Core-core repulsion = 23240.267086 eV Total energy + Delta-G solvation = -3496.637829 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10948 -40.25656 -38.53237 -36.03508 -35.42072 -33.73293 -32.92551 -31.75657 -31.18315 -28.66371 -27.52075 -26.95956 -25.90933 -23.90076 -22.80061 -22.32613 -21.81356 -21.03986 -19.38020 -19.31447 -18.04695 -17.14249 -16.82164 -16.19298 -16.18019 -15.88831 -15.83687 -15.46844 -15.07697 -14.93583 -14.71406 -14.57088 -14.47433 -13.87826 -13.62543 -13.47281 -13.31083 -13.10186 -12.87292 -12.83564 -12.80322 -12.61744 -12.50108 -12.39534 -12.29319 -12.11718 -11.90955 -11.80083 -11.52371 -11.47116 -11.13460 -11.06404 -10.79788 -10.77600 -10.26118 -9.89241 -9.38350 -9.20552 -8.67124 -6.35206 0.52820 1.01433 1.32370 1.45592 1.48709 2.21065 2.37053 2.51673 2.79755 3.66292 3.70703 3.73437 3.80359 4.10996 4.25060 4.27085 4.36995 4.38398 4.48122 4.50750 4.51845 4.59213 4.63143 4.69104 4.71839 4.82874 4.84051 4.95919 5.01087 5.05122 5.09443 5.11295 5.15326 5.22884 5.24346 5.27097 5.32657 5.34775 5.38561 5.44963 5.52138 5.54207 5.61799 5.70913 5.75330 5.82699 6.05377 6.10702 6.34870 6.64816 6.81994 6.92542 7.02518 7.69083 8.31884 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.003402 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.178842 B = 8228.491452 C = 9380.792400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.080 4.080 3 H 0.076 0.924 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.081 4.081 8 H 0.085 0.915 9 C 0.127 3.873 10 N -0.725 5.725 11 C 0.557 3.443 12 O -0.581 6.581 13 C -0.278 4.278 14 C -0.055 4.055 15 C -0.234 4.234 16 C -0.091 4.091 17 C -0.177 4.177 18 C 0.117 3.883 19 C -0.460 4.460 20 H 0.077 0.923 21 C 0.033 3.967 22 N -0.826 5.826 23 Si 0.977 3.023 24 H -0.272 1.272 25 H -0.256 1.256 26 H -0.264 1.264 27 C -0.075 4.075 28 H 0.065 0.935 29 C -0.154 4.154 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.043 0.957 41 H 0.404 0.596 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.288 0.712 47 H 0.041 0.959 48 H 0.064 0.936 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.627 12.767 -15.576 20.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.098 4.098 3 H 0.094 0.906 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.152 4.152 7 C -0.099 4.099 8 H 0.103 0.897 9 C 0.004 3.996 10 N -0.379 5.379 11 C 0.350 3.650 12 O -0.463 6.463 13 C -0.283 4.283 14 C -0.073 4.073 15 C -0.253 4.253 16 C -0.110 4.110 17 C -0.196 4.196 18 C 0.114 3.886 19 C -0.489 4.489 20 H 0.095 0.905 21 C -0.182 4.182 22 N -0.453 5.453 23 Si 0.799 3.201 24 H -0.197 1.197 25 H -0.180 1.180 26 H -0.188 1.188 27 C -0.094 4.094 28 H 0.084 0.916 29 C -0.211 4.211 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.242 0.758 42 H 0.150 0.850 43 H 0.152 0.848 44 H 0.139 0.861 45 H 0.114 0.886 46 H 0.099 0.901 47 H 0.060 0.940 48 H 0.083 0.917 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.190 12.947 -14.762 19.757 hybrid contribution 0.432 -0.272 0.849 0.990 sum -1.758 12.676 -13.913 18.903 Atomic orbital electron populations 1.21996 0.94963 1.02156 1.01889 1.21070 0.96257 0.99001 0.93502 0.90604 1.21569 1.00432 0.95437 0.97637 1.21544 1.01318 0.95650 0.96837 1.21590 1.00554 0.98882 0.94210 1.21372 1.01202 0.94850 0.92503 0.89651 1.21408 0.97098 0.82282 0.98841 1.45793 1.50281 1.15317 1.26520 1.18482 0.80305 0.85357 0.80896 1.90655 1.38283 1.77275 1.40080 1.19897 1.07572 0.94261 1.06577 1.21067 0.93885 0.96381 0.95979 1.20816 1.06466 0.95020 1.02960 1.21183 0.95940 0.99300 0.94575 1.21253 1.01861 0.96139 1.00337 1.17846 0.89865 0.90602 0.90333 1.20020 1.09002 1.25445 0.94431 0.90475 1.26739 0.98669 0.92111 1.00643 1.69736 1.26843 1.29594 1.19113 0.85288 0.78553 0.78818 0.77488 1.19708 1.17969 1.18763 1.21056 0.99967 0.92893 0.95486 0.91639 1.21978 1.01733 1.00441 0.96974 0.92578 0.92077 0.92307 0.90941 0.92330 0.91060 0.91539 0.92689 0.92241 0.93088 0.93908 0.75845 0.85035 0.84795 0.86120 0.88558 0.90093 0.93970 0.91667 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.15 71.98 0.59 -1.46 16 2 C -0.08 -1.14 2.72 -10.80 -0.03 -1.17 16 3 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 4 C -0.11 -1.53 5.45 30.59 0.17 -1.36 16 5 C -0.12 -1.71 5.65 30.59 0.17 -1.54 16 6 C -0.11 -2.21 5.08 30.59 0.16 -2.06 16 7 C -0.08 -1.69 1.48 -10.79 -0.02 -1.70 16 8 H 0.09 1.70 6.43 -2.39 -0.02 1.68 16 9 C 0.13 3.88 4.85 86.38 0.42 4.30 16 10 N -0.72 -25.44 5.23 -466.38 -2.44 -27.88 16 11 C 0.56 26.68 7.72 86.67 0.67 27.35 16 12 O -0.58 -32.77 13.64 -4.06 -0.06 -32.83 16 13 C -0.28 -13.83 5.92 -19.70 -0.12 -13.94 16 14 C -0.05 -2.20 9.52 22.50 0.21 -1.98 16 15 C -0.23 -9.11 10.03 22.41 0.22 -8.88 16 16 C -0.09 -3.98 10.01 22.26 0.22 -3.76 16 17 C -0.18 -9.23 8.62 22.72 0.20 -9.04 16 18 C 0.12 6.59 5.47 -21.11 -0.12 6.47 16 19 C -0.46 -27.18 7.59 23.42 0.18 -27.00 16 20 H 0.08 4.81 6.05 -2.91 -0.02 4.79 16 21 C 0.03 1.79 5.23 85.37 0.45 2.24 16 22 N -0.83 -45.33 11.33 21.88 0.25 -45.08 16 23 Si 0.98 42.85 29.57 68.60 2.03 44.88 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 26 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 27 C -0.07 -1.37 2.02 -10.79 -0.02 -1.39 16 28 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 29 C -0.15 -2.93 8.50 71.98 0.61 -2.32 16 30 H 0.06 0.77 6.43 -2.39 -0.02 0.75 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.83 4.81 -2.39 -0.01 0.82 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.98 6.43 -2.39 -0.02 0.97 16 36 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 1.20 7.18 -2.39 -0.02 1.19 16 39 H 0.05 1.70 6.17 -2.39 -0.01 1.69 16 40 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.40 11.66 5.72 -92.71 -0.53 11.13 16 42 H 0.13 4.07 6.44 -2.91 -0.02 4.05 16 43 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 45 H 0.10 5.26 6.78 -2.91 -0.02 5.24 16 46 H 0.29 14.29 8.29 -92.71 -0.77 13.52 16 47 H 0.04 0.97 6.32 -2.39 -0.02 0.95 16 48 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 1.13 6.43 -2.39 -0.02 1.11 16 Total: -1.00 -68.36 367.97 4.17 -64.19 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.42 Total: 33.97 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 3.96 Total: -37.25 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -2.19 Total: -72.97 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.06 Total: -32.83 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -68.36 4.17 -64.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568333312.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.827 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds