Wall clock time and date at job start Tue Mar 31 2020 11:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47143 * 2 1 4 4 C 1.34785 * 119.99620 * 80.65555 * 3 2 1 5 5 O 1.21542 * 120.00042 * 341.11764 * 4 3 2 6 6 C 1.47888 * 119.99488 * 161.12039 * 4 3 2 7 7 C 1.39917 * 120.02891 * 23.38134 * 6 4 3 8 8 C 1.38326 * 120.35700 * 180.27843 * 7 6 4 9 9 C 1.37746 * 120.41344 * 359.70370 * 8 7 6 10 10 C 1.40747 * 120.04104 * 0.02562 * 9 8 7 11 11 C 1.41441 * 120.17869 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99649 * 326.19633 * 11 10 9 13 13 C 1.39931 * 120.00020 * 146.19592 * 11 10 9 14 14 N 1.30836 * 119.99945 * 2.01179 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 182.01387 * 13 11 10 16 16 H 1.48500 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47162 * 119.99720 * 15 13 11 18 18 H 1.48501 * 109.47317 * 239.99919 * 15 13 11 19 19 C 1.38996 * 120.02034 * 203.10727 * 6 4 3 20 20 C 1.46502 * 120.00192 * 260.65511 * 3 2 1 21 21 H 1.08997 * 109.47253 * 230.95182 * 20 3 2 22 22 C 1.53000 * 109.46760 * 110.95204 * 20 3 2 23 23 C 1.53004 * 109.47255 * 299.99764 * 22 20 3 24 24 C 1.53004 * 109.47163 * 300.00548 * 23 22 20 25 25 C 1.52994 * 109.47021 * 59.99741 * 24 23 22 26 26 C 1.52998 * 109.47331 * 299.99816 * 25 24 23 27 27 H 1.08994 * 109.47100 * 300.00221 * 26 25 24 28 28 C 1.53007 * 109.47113 * 180.02562 * 26 25 24 29 29 H 1.09006 * 109.46708 * 71.91441 * 1 2 3 30 30 H 1.08994 * 109.47509 * 191.91117 * 1 2 3 31 31 H 1.09000 * 109.47077 * 311.91579 * 1 2 3 32 32 H 1.09001 * 109.47422 * 240.00186 * 2 1 3 33 33 H 1.09000 * 109.47185 * 119.99961 * 2 1 3 34 34 H 1.08001 * 119.81761 * 359.97438 * 7 6 4 35 35 H 1.08001 * 119.79377 * 179.72324 * 8 7 6 36 36 H 1.08004 * 119.97986 * 180.02562 * 9 8 7 37 37 H 0.97001 * 119.99792 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.20562 * 0.02668 * 19 6 4 39 39 H 1.08996 * 109.47406 * 60.00287 * 22 20 3 40 40 H 1.09003 * 109.46937 * 179.97438 * 22 20 3 41 41 H 1.08999 * 109.46547 * 180.02562 * 23 22 20 42 42 H 1.08994 * 109.46822 * 60.00427 * 23 22 20 43 43 H 1.09003 * 109.46878 * 299.99747 * 24 23 22 44 44 H 1.09002 * 109.46592 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46640 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47290 * 60.00258 * 25 24 23 47 47 H 1.09002 * 109.47167 * 279.59982 * 28 26 25 48 48 H 1.09005 * 109.46680 * 39.59752 * 28 26 25 49 49 H 1.08994 * 109.46969 * 159.59809 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0643 2.0797 1.1518 5 8 1.4043 1.7204 2.1072 6 6 2.9176 3.2833 1.2531 7 6 3.2819 3.9826 0.0972 8 6 4.0846 5.1059 0.1836 9 6 4.5295 5.5526 1.4083 10 6 4.1687 4.8654 2.5824 11 6 4.6243 5.3213 3.8415 12 1 5.5977 5.7807 3.9294 13 6 3.8139 5.1769 4.9730 14 7 2.6513 4.5849 4.8738 15 14 4.3918 5.8294 6.6252 16 1 5.7310 6.4520 6.4706 17 1 3.4285 6.8453 7.1206 18 1 4.4749 4.7103 7.5978 19 6 3.3537 3.7239 2.4971 20 6 2.4568 2.0032 -1.2519 21 1 3.4453 2.4411 -1.1134 22 6 1.4655 3.0979 -1.6518 23 6 0.0779 2.4833 -1.8463 24 6 0.1395 1.4235 -2.9482 25 6 1.1306 0.3288 -2.5481 26 6 2.5182 0.9435 -2.3537 27 1 2.8443 1.4062 -3.2851 28 6 3.5096 -0.1514 -1.9542 29 1 -0.3633 0.3191 -0.9770 30 1 -0.3634 -1.0055 0.2121 31 1 -0.3633 0.6865 0.7647 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.9386 3.6406 -0.8679 35 1 4.3639 5.6361 -0.7149 36 1 5.1555 6.4306 1.4676 37 1 2.0897 4.4845 5.6583 38 1 3.0717 3.1896 3.3923 39 1 1.4217 3.8529 -0.8669 40 1 1.7919 3.5610 -2.5831 41 1 -0.6280 3.2632 -2.1317 42 1 -0.2482 2.0205 -0.9149 43 1 0.4656 1.8863 -3.8796 44 1 -0.8492 0.9860 -3.0870 45 1 1.1741 -0.4264 -3.3329 46 1 0.8045 -0.1340 -1.6167 47 1 3.4089 -0.3618 -0.8894 48 1 3.3006 -1.0564 -2.5247 49 1 4.5252 0.1840 -2.1639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066415048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:38 Heat of formation + Delta-G solvation = 74.139881 kcal Electronic energy + Delta-G solvation = -28428.451198 eV Core-core repulsion = 24937.890997 eV Total energy + Delta-G solvation = -3490.560201 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42674 -38.17789 -36.99596 -34.19698 -33.99938 -32.92787 -32.44101 -29.70856 -29.51985 -28.48610 -26.43624 -25.26817 -23.60374 -22.79441 -21.84438 -21.16701 -20.53876 -20.44855 -18.42419 -17.13595 -16.19467 -15.71459 -15.51221 -15.18801 -14.88458 -14.72404 -14.27872 -14.12758 -13.66511 -13.45606 -13.23741 -13.00135 -12.79581 -12.49524 -12.44022 -12.40806 -11.95349 -11.91377 -11.63484 -11.53812 -11.42690 -11.24725 -11.10320 -10.93610 -10.79477 -10.52892 -10.39592 -10.15811 -10.07291 -9.96763 -9.92066 -9.65153 -9.40803 -9.19733 -8.78689 -8.10886 -7.54743 -7.30572 -6.59296 -4.39662 2.28721 2.85998 3.11428 3.15158 3.17846 3.49303 3.81415 3.99576 4.61262 4.68350 4.73084 4.81267 5.10218 5.13290 5.22617 5.39079 5.41567 5.44996 5.49024 5.50788 5.57959 5.59644 5.65463 5.73975 5.80375 5.87256 5.90391 5.98572 6.06157 6.09538 6.12484 6.19796 6.24605 6.28717 6.32230 6.39270 6.44736 6.53248 6.63021 6.74042 7.04334 7.07125 7.15159 7.31619 7.46263 7.71989 7.83530 7.96681 8.11295 8.25962 8.58623 8.89899 8.90829 8.99152 10.31517 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.004063 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.215143 B = 6890.311223 C = 7392.548450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.082 3.918 3 N -0.609 5.609 4 C 0.567 3.433 5 O -0.536 6.536 6 C -0.131 4.131 7 C -0.257 4.257 8 C -0.111 4.111 9 C -0.200 4.200 10 C 0.094 3.906 11 C -0.466 4.466 12 H 0.077 0.923 13 C 0.068 3.932 14 N -0.802 5.802 15 Si 0.914 3.086 16 H -0.262 1.262 17 H -0.274 1.274 18 H -0.274 1.274 19 C -0.086 4.086 20 C 0.131 3.869 21 H 0.112 0.888 22 C -0.151 4.151 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.184 4.184 26 C -0.096 4.096 27 H 0.079 0.921 28 C -0.166 4.166 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.152 0.848 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.280 0.720 38 H 0.139 0.861 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.127 0.873 47 H 0.074 0.926 48 H 0.056 0.944 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.423 -7.962 -14.083 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.040 4.040 3 N -0.344 5.344 4 C 0.360 3.640 5 O -0.413 6.413 6 C -0.135 4.135 7 C -0.275 4.275 8 C -0.129 4.129 9 C -0.219 4.219 10 C 0.092 3.908 11 C -0.497 4.497 12 H 0.095 0.905 13 C -0.148 4.148 14 N -0.428 5.428 15 Si 0.739 3.261 16 H -0.186 1.186 17 H -0.200 1.200 18 H -0.199 1.199 19 C -0.106 4.106 20 C 0.028 3.972 21 H 0.129 0.871 22 C -0.189 4.189 23 C -0.167 4.167 24 C -0.152 4.152 25 C -0.220 4.220 26 C -0.115 4.115 27 H 0.097 0.903 28 C -0.223 4.223 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.132 0.868 33 H 0.084 0.916 34 H 0.169 0.831 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.091 0.909 38 H 0.156 0.844 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.144 0.856 47 H 0.092 0.908 48 H 0.075 0.925 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.979 -8.229 -13.399 16.004 hybrid contribution 0.141 0.555 0.665 0.877 sum -2.838 -7.674 -12.735 15.137 Atomic orbital electron populations 1.22805 0.96982 1.02285 1.03435 1.22260 0.94148 0.84203 1.03376 1.47734 1.66252 1.13164 1.07256 1.18863 0.80571 0.83462 0.81150 1.90694 1.42542 1.69727 1.38303 1.19568 1.02175 0.96278 0.95437 1.22442 1.06191 1.00178 0.98704 1.20531 0.99232 0.96922 0.96260 1.21272 1.06793 1.00834 0.93037 1.17631 0.90906 0.89697 0.92588 1.19546 1.03058 1.35421 0.91675 0.90451 1.25909 0.94364 0.93637 1.00850 1.69757 1.08766 1.32798 1.31505 0.86164 0.79698 0.79131 0.81093 1.18609 1.19969 1.19915 1.21837 0.98063 0.95536 0.95164 1.21865 0.99248 0.92750 0.83306 0.87107 1.22404 0.95292 0.98623 1.02560 1.21758 0.97063 0.98050 0.99871 1.21477 0.98665 0.96605 0.98428 1.23180 0.94927 0.98563 1.05344 1.21366 0.95673 0.96115 0.98326 0.90253 1.22230 0.99103 0.98197 1.02797 0.90091 0.92509 0.91013 0.86756 0.91636 0.83147 0.89044 0.88797 0.90870 0.84367 0.88905 0.91130 0.92550 0.90347 0.92514 0.92539 0.92553 0.85581 0.90758 0.92536 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.60 7.66 37.16 0.28 -2.31 16 2 C 0.08 1.14 3.74 -4.04 -0.02 1.12 16 3 N -0.61 -9.96 1.78 -175.36 -0.31 -10.27 16 4 C 0.57 12.33 6.93 -12.31 -0.09 12.24 16 5 O -0.54 -13.42 15.61 5.33 0.08 -13.34 16 6 C -0.13 -3.08 5.75 -105.04 -0.60 -3.68 16 7 C -0.26 -5.24 6.36 -38.92 -0.25 -5.48 16 8 C -0.11 -2.33 10.01 -39.73 -0.40 -2.73 16 9 C -0.20 -4.74 9.78 -38.81 -0.38 -5.12 16 10 C 0.09 2.51 5.55 -106.87 -0.59 1.91 16 11 C -0.47 -12.49 9.05 -37.73 -0.34 -12.83 16 12 H 0.08 1.98 7.85 -52.49 -0.41 1.57 16 13 C 0.07 1.77 5.41 -17.34 -0.09 1.68 16 14 N -0.80 -21.90 10.62 55.55 0.59 -21.31 16 15 Si 0.91 19.36 29.56 -169.99 -5.02 14.34 16 16 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 18 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 19 C -0.09 -2.30 8.20 -38.44 -0.32 -2.62 16 20 C 0.13 1.82 1.82 -67.93 -0.12 1.69 16 21 H 0.11 1.69 5.17 -51.93 -0.27 1.42 16 22 C -0.15 -2.05 3.97 -26.73 -0.11 -2.16 16 23 C -0.13 -1.63 5.54 -26.73 -0.15 -1.78 16 24 C -0.11 -1.16 5.14 -26.73 -0.14 -1.30 16 25 C -0.18 -1.82 4.28 -26.74 -0.11 -1.94 16 26 C -0.10 -1.03 2.46 -90.62 -0.22 -1.25 16 27 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 28 C -0.17 -1.68 8.34 37.16 0.31 -1.37 16 29 H 0.08 0.94 3.47 -51.93 -0.18 0.76 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.19 6.97 -51.93 -0.36 0.83 16 32 H 0.12 1.27 2.52 -51.93 -0.13 1.14 16 33 H 0.07 1.00 8.02 -51.93 -0.42 0.58 16 34 H 0.15 2.53 1.84 -67.53 -0.12 2.41 16 35 H 0.09 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.09 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.28 7.08 8.30 -40.82 -0.34 6.74 16 38 H 0.14 4.06 5.90 -52.49 -0.31 3.75 16 39 H 0.09 1.55 5.54 -51.93 -0.29 1.26 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.08 1.12 4.53 -51.93 -0.24 0.89 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 45 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 46 H 0.13 1.32 1.52 -54.64 -0.08 1.24 16 47 H 0.07 0.85 5.12 -51.93 -0.27 0.59 16 48 H 0.06 0.48 7.97 -51.93 -0.41 0.06 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -29.61 344.80 -9.65 -39.26 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -6.85 Total: 12.06 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -3.33 Total: -25.93 kcal Atomic # 7 Polarization: -31.86 SS G_CDS: 0.28 Total: -31.58 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: 0.08 Total: -13.34 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.61 -9.65 -39.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066415048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.395 kcal (2) G-P(sol) polarization free energy of solvation -29.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds