Wall clock time and date at job start Tue Mar 31 2020 11:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47143 * 2 1 4 4 C 1.34785 * 119.99620 * 80.65555 * 3 2 1 5 5 O 1.21542 * 120.00042 * 341.11764 * 4 3 2 6 6 C 1.47888 * 119.99488 * 161.12039 * 4 3 2 7 7 C 1.39917 * 120.02891 * 23.38134 * 6 4 3 8 8 C 1.38326 * 120.35700 * 180.27843 * 7 6 4 9 9 C 1.37746 * 120.41344 * 359.70370 * 8 7 6 10 10 C 1.40747 * 120.04104 * 0.02562 * 9 8 7 11 11 C 1.41441 * 120.17869 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99649 * 326.19633 * 11 10 9 13 13 C 1.39931 * 120.00020 * 146.19592 * 11 10 9 14 14 N 1.30836 * 119.99945 * 2.01179 * 13 11 10 15 15 Si 1.86800 * 120.00181 * 182.01387 * 13 11 10 16 16 H 1.48500 * 109.47130 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47162 * 119.99720 * 15 13 11 18 18 H 1.48501 * 109.47317 * 239.99919 * 15 13 11 19 19 C 1.38996 * 120.02034 * 203.10727 * 6 4 3 20 20 C 1.46502 * 120.00192 * 260.65511 * 3 2 1 21 21 H 1.08997 * 109.47253 * 230.95182 * 20 3 2 22 22 C 1.53000 * 109.46760 * 110.95204 * 20 3 2 23 23 C 1.53004 * 109.47255 * 299.99764 * 22 20 3 24 24 C 1.53004 * 109.47163 * 300.00548 * 23 22 20 25 25 C 1.52994 * 109.47021 * 59.99741 * 24 23 22 26 26 C 1.52998 * 109.47331 * 299.99816 * 25 24 23 27 27 H 1.08994 * 109.47100 * 300.00221 * 26 25 24 28 28 C 1.53007 * 109.47113 * 180.02562 * 26 25 24 29 29 H 1.09006 * 109.46708 * 71.91441 * 1 2 3 30 30 H 1.08994 * 109.47509 * 191.91117 * 1 2 3 31 31 H 1.09000 * 109.47077 * 311.91579 * 1 2 3 32 32 H 1.09001 * 109.47422 * 240.00186 * 2 1 3 33 33 H 1.09000 * 109.47185 * 119.99961 * 2 1 3 34 34 H 1.08001 * 119.81761 * 359.97438 * 7 6 4 35 35 H 1.08001 * 119.79377 * 179.72324 * 8 7 6 36 36 H 1.08004 * 119.97986 * 180.02562 * 9 8 7 37 37 H 0.97001 * 119.99792 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.20562 * 0.02668 * 19 6 4 39 39 H 1.08996 * 109.47406 * 60.00287 * 22 20 3 40 40 H 1.09003 * 109.46937 * 179.97438 * 22 20 3 41 41 H 1.08999 * 109.46547 * 180.02562 * 23 22 20 42 42 H 1.08994 * 109.46822 * 60.00427 * 23 22 20 43 43 H 1.09003 * 109.46878 * 299.99747 * 24 23 22 44 44 H 1.09002 * 109.46592 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.46640 * 179.97438 * 25 24 23 46 46 H 1.09003 * 109.47290 * 60.00258 * 25 24 23 47 47 H 1.09002 * 109.47167 * 279.59982 * 28 26 25 48 48 H 1.09005 * 109.46680 * 39.59752 * 28 26 25 49 49 H 1.08994 * 109.46969 * 159.59809 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.0643 2.0797 1.1518 5 8 1.4043 1.7204 2.1072 6 6 2.9176 3.2833 1.2531 7 6 3.2819 3.9826 0.0972 8 6 4.0846 5.1059 0.1836 9 6 4.5295 5.5526 1.4083 10 6 4.1687 4.8654 2.5824 11 6 4.6243 5.3213 3.8415 12 1 5.5977 5.7807 3.9294 13 6 3.8139 5.1769 4.9730 14 7 2.6513 4.5849 4.8738 15 14 4.3918 5.8294 6.6252 16 1 5.7310 6.4520 6.4706 17 1 3.4285 6.8453 7.1206 18 1 4.4749 4.7103 7.5978 19 6 3.3537 3.7239 2.4971 20 6 2.4568 2.0032 -1.2519 21 1 3.4453 2.4411 -1.1134 22 6 1.4655 3.0979 -1.6518 23 6 0.0779 2.4833 -1.8463 24 6 0.1395 1.4235 -2.9482 25 6 1.1306 0.3288 -2.5481 26 6 2.5182 0.9435 -2.3537 27 1 2.8443 1.4062 -3.2851 28 6 3.5096 -0.1514 -1.9542 29 1 -0.3633 0.3191 -0.9770 30 1 -0.3634 -1.0055 0.2121 31 1 -0.3633 0.6865 0.7647 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.9386 3.6406 -0.8679 35 1 4.3639 5.6361 -0.7149 36 1 5.1555 6.4306 1.4676 37 1 2.0897 4.4845 5.6583 38 1 3.0717 3.1896 3.3923 39 1 1.4217 3.8529 -0.8669 40 1 1.7919 3.5610 -2.5831 41 1 -0.6280 3.2632 -2.1317 42 1 -0.2482 2.0205 -0.9149 43 1 0.4656 1.8863 -3.8796 44 1 -0.8492 0.9860 -3.0870 45 1 1.1741 -0.4264 -3.3329 46 1 0.8045 -0.1340 -1.6167 47 1 3.4089 -0.3618 -0.8894 48 1 3.3006 -1.0564 -2.5247 49 1 4.5252 0.1840 -2.1639 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066415048.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:44:35 Heat of formation + Delta-G solvation = 58.826402 kcal Electronic energy + Delta-G solvation = -28429.115240 eV Core-core repulsion = 24937.890997 eV Total energy + Delta-G solvation = -3491.224243 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66036 -39.75201 -38.76887 -35.86306 -35.22863 -34.43946 -33.41239 -31.45165 -31.33882 -29.71187 -27.53625 -26.98700 -25.07981 -23.87914 -23.22506 -22.65709 -21.89945 -21.64189 -20.07223 -18.82930 -17.64799 -17.27481 -17.00186 -16.63729 -16.26885 -15.91803 -15.70078 -15.46829 -15.01274 -14.76708 -14.62329 -14.47427 -14.28780 -14.08913 -13.68570 -13.46112 -13.37790 -13.28820 -12.94766 -12.83548 -12.68047 -12.61902 -12.44372 -12.34263 -12.15683 -11.91123 -11.81806 -11.71798 -11.44658 -11.22022 -11.08424 -11.06183 -10.91260 -10.69751 -10.29588 -9.61629 -9.33701 -9.18804 -8.51383 -6.42661 0.44170 1.02608 1.34620 1.44240 1.51159 2.03387 2.13201 2.20818 2.81300 3.61582 3.63713 3.71560 3.80618 4.03221 4.11450 4.22239 4.27623 4.32198 4.42449 4.48959 4.49976 4.56047 4.59230 4.61078 4.71747 4.79371 4.86537 4.89724 4.97796 4.99451 5.03712 5.11459 5.12660 5.18160 5.23577 5.24105 5.29777 5.36605 5.38738 5.40671 5.44333 5.53672 5.56141 5.68235 5.82194 5.88264 5.97511 6.10390 6.32137 6.47318 6.66573 6.92189 6.97812 7.31912 8.40779 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.021414 B = 0.004063 C = 0.003787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.215143 B = 6890.311223 C = 7392.548450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.077 3.923 3 N -0.591 5.591 4 C 0.560 3.440 5 O -0.585 6.585 6 C -0.144 4.144 7 C -0.231 4.231 8 C -0.110 4.110 9 C -0.204 4.204 10 C 0.059 3.941 11 C -0.502 4.502 12 H 0.080 0.920 13 C 0.021 3.979 14 N -0.847 5.847 15 Si 0.989 3.011 16 H -0.251 1.251 17 H -0.268 1.268 18 H -0.270 1.270 19 C -0.124 4.124 20 C 0.121 3.879 21 H 0.100 0.900 22 C -0.153 4.153 23 C -0.131 4.131 24 C -0.108 4.108 25 C -0.184 4.184 26 C -0.088 4.088 27 H 0.106 0.894 28 C -0.170 4.170 29 H 0.103 0.897 30 H 0.078 0.922 31 H 0.028 0.972 32 H 0.155 0.845 33 H 0.043 0.957 34 H 0.195 0.805 35 H 0.139 0.861 36 H 0.107 0.893 37 H 0.280 0.720 38 H 0.100 0.900 39 H 0.056 0.944 40 H 0.104 0.896 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.085 0.915 46 H 0.115 0.885 47 H 0.053 0.947 48 H 0.082 0.918 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -8.529 -18.491 20.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.043 4.043 3 N -0.323 5.323 4 C 0.351 3.649 5 O -0.466 6.466 6 C -0.147 4.147 7 C -0.249 4.249 8 C -0.128 4.128 9 C -0.223 4.223 10 C 0.057 3.943 11 C -0.533 4.533 12 H 0.098 0.902 13 C -0.190 4.190 14 N -0.475 5.475 15 Si 0.810 3.190 16 H -0.174 1.174 17 H -0.193 1.193 18 H -0.195 1.195 19 C -0.145 4.145 20 C 0.019 3.981 21 H 0.117 0.883 22 C -0.191 4.191 23 C -0.169 4.169 24 C -0.146 4.146 25 C -0.220 4.220 26 C -0.107 4.107 27 H 0.124 0.876 28 C -0.226 4.226 29 H 0.121 0.879 30 H 0.097 0.903 31 H 0.048 0.952 32 H 0.172 0.828 33 H 0.062 0.938 34 H 0.211 0.789 35 H 0.157 0.843 36 H 0.125 0.875 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.075 0.925 40 H 0.122 0.878 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.132 0.868 47 H 0.072 0.928 48 H 0.101 0.899 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.565 -8.809 -17.874 20.092 hybrid contribution -0.007 0.668 1.773 1.894 sum -2.572 -8.142 -16.102 18.225 Atomic orbital electron populations 1.22757 0.96170 1.02566 1.03216 1.22615 0.94829 0.82635 1.04259 1.47695 1.64444 1.13633 1.06553 1.18794 0.80281 0.83535 0.82257 1.90660 1.44523 1.70920 1.40478 1.19893 1.02090 0.97369 0.95391 1.23111 1.03657 0.98674 0.99467 1.21053 0.98032 0.96800 0.96926 1.21565 1.06523 1.00990 0.93261 1.17965 0.92004 0.90296 0.94004 1.19829 1.03659 1.37009 0.92828 0.90202 1.26861 0.94094 0.93435 1.04656 1.69926 1.10315 1.34800 1.32439 0.85051 0.79547 0.78484 0.75917 1.17444 1.19269 1.19532 1.21606 1.00810 0.96680 0.95380 1.22073 0.98462 0.94456 0.83148 0.88279 1.22374 0.96269 0.97708 1.02742 1.21741 0.96156 0.99033 0.99942 1.21451 0.99577 0.95745 0.97806 1.23139 0.94064 0.99065 1.05727 1.21382 0.96573 0.95187 0.97539 0.87579 1.22249 0.99334 0.99215 1.01844 0.87932 0.90322 0.95243 0.82808 0.93806 0.78858 0.84281 0.87464 0.90944 0.88250 0.92520 0.87811 0.92101 0.92886 0.90674 0.91333 0.89678 0.86807 0.92809 0.89914 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.91 7.66 71.98 0.55 -4.36 16 2 C 0.08 2.11 3.74 86.38 0.32 2.43 16 3 N -0.59 -19.34 1.78 -827.01 -1.47 -20.81 16 4 C 0.56 25.76 6.93 86.80 0.60 26.36 16 5 O -0.58 -31.94 15.61 -3.85 -0.06 -32.00 16 6 C -0.14 -7.09 5.75 -20.13 -0.12 -7.21 16 7 C -0.23 -9.28 6.36 22.70 0.14 -9.13 16 8 C -0.11 -4.43 10.01 22.17 0.22 -4.21 16 9 C -0.20 -9.77 9.78 22.77 0.22 -9.55 16 10 C 0.06 3.34 5.55 -21.32 -0.12 3.22 16 11 C -0.50 -28.52 9.05 23.47 0.21 -28.30 16 12 H 0.08 4.28 7.85 -2.91 -0.02 4.26 16 13 C 0.02 1.14 5.41 85.25 0.46 1.60 16 14 N -0.85 -50.09 10.62 21.82 0.23 -49.86 16 15 Si 0.99 41.69 29.56 68.60 2.03 43.72 16 16 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 17 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 18 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 19 C -0.12 -7.19 8.20 23.01 0.19 -7.00 16 20 C 0.12 3.03 1.82 44.99 0.08 3.11 16 21 H 0.10 2.74 5.17 -2.39 -0.01 2.73 16 22 C -0.15 -3.73 3.97 30.60 0.12 -3.61 16 23 C -0.13 -2.94 5.54 30.60 0.17 -2.77 16 24 C -0.11 -1.67 5.14 30.59 0.16 -1.51 16 25 C -0.18 -2.69 4.28 30.59 0.13 -2.56 16 26 C -0.09 -1.46 2.46 -10.79 -0.03 -1.49 16 27 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 28 C -0.17 -2.74 8.34 71.98 0.60 -2.13 16 29 H 0.10 2.18 3.47 -2.38 -0.01 2.17 16 30 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.03 1.01 6.97 -2.39 -0.02 1.00 16 32 H 0.16 3.01 2.52 -2.39 -0.01 3.00 16 33 H 0.04 1.38 8.02 -2.39 -0.02 1.37 16 34 H 0.20 6.04 1.84 -17.05 -0.03 6.01 16 35 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 36 H 0.11 4.75 8.06 -2.91 -0.02 4.72 16 37 H 0.28 15.37 8.30 -92.71 -0.77 14.60 16 38 H 0.10 6.49 5.90 -2.91 -0.02 6.47 16 39 H 0.06 1.81 5.54 -2.39 -0.01 1.80 16 40 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.47 4.53 -2.39 -0.01 1.46 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.07 0.94 8.13 -2.39 -0.02 0.92 16 45 H 0.08 0.88 8.13 -2.39 -0.02 0.87 16 46 H 0.11 1.94 1.52 -4.93 -0.01 1.93 16 47 H 0.05 1.10 5.12 -2.39 -0.01 1.09 16 48 H 0.08 0.95 7.97 -2.38 -0.02 0.93 16 49 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -73.89 344.80 5.61 -68.29 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: 0.95 Total: 37.79 kcal Atomic # 6 Polarization: -51.06 SS G_CDS: 3.93 Total: -47.13 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -1.24 Total: -70.67 kcal Atomic # 8 Polarization: -31.94 SS G_CDS: -0.06 Total: -32.00 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 2.03 Total: 43.72 kcal Total: -73.89 5.61 -68.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066415048.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.112 kcal (2) G-P(sol) polarization free energy of solvation -73.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds