Wall clock time and date at job start Tue Mar 31 2020 11:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42906 * 109.46881 * 2 1 4 4 C 1.42899 * 113.99870 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.87811 * 338.18820 * 4 3 2 6 6 C 1.53916 * 113.65445 * 109.50431 * 4 3 2 7 7 C 1.53926 * 87.22223 * 89.71294 * 6 4 3 8 8 H 1.08996 * 113.65264 * 270.28415 * 7 6 4 9 9 N 1.46496 * 113.65002 * 139.35343 * 7 6 4 10 10 C 1.38859 * 120.00224 * 159.54818 * 9 7 6 11 11 C 1.39560 * 119.84414 * 179.97438 * 10 9 7 12 12 C 1.36337 * 120.16202 * 180.02562 * 11 10 9 13 13 C 1.40892 * 119.83688 * 0.02562 * 12 11 10 14 14 C 1.41138 * 120.15456 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00091 * 336.04271 * 14 13 12 16 16 C 1.39870 * 119.99416 * 156.03995 * 14 13 12 17 17 N 1.30898 * 120.00354 * 333.19954 * 16 14 13 18 18 Si 1.86800 * 119.99614 * 153.47200 * 16 14 13 19 19 H 1.48499 * 109.47176 * 179.72193 * 18 16 14 20 20 H 1.48493 * 109.47339 * 299.72794 * 18 16 14 21 21 H 1.48506 * 109.47055 * 59.72464 * 18 16 14 22 22 C 1.40884 * 119.68570 * 0.27785 * 13 12 11 23 23 C 1.36347 * 119.83759 * 359.41675 * 22 13 12 24 24 C 1.53009 * 86.95104 * 24.82079 * 7 6 4 25 25 C 1.53568 * 115.13595 * 218.19830 * 24 7 6 26 26 C 1.55063 * 103.98472 * 206.85363 * 25 24 7 27 27 C 1.54952 * 102.85758 * 37.30641 * 26 25 24 28 28 C 1.53176 * 115.37607 * 92.18823 * 24 7 6 29 29 H 1.08990 * 109.47197 * 60.00231 * 1 2 3 30 30 H 1.09000 * 109.46643 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46985 * 299.99526 * 1 2 3 32 32 H 1.09000 * 109.47127 * 239.99960 * 2 1 3 33 33 H 1.09001 * 109.47598 * 119.99693 * 2 1 3 34 34 H 1.09004 * 113.58927 * 335.13565 * 6 4 3 35 35 H 1.08996 * 113.59148 * 204.29650 * 6 4 3 36 36 H 0.97009 * 120.00403 * 339.55724 * 9 7 6 37 37 H 1.08005 * 119.92112 * 0.02903 * 11 10 9 38 38 H 1.08001 * 120.08771 * 180.02562 * 12 11 10 39 39 H 0.97004 * 119.99880 * 354.45974 * 17 16 14 40 40 H 1.08000 * 120.08052 * 179.71988 * 22 13 12 41 41 H 1.07997 * 119.91878 * 180.27964 * 23 22 13 42 42 H 1.08993 * 110.52556 * 325.48035 * 25 24 7 43 43 H 1.08998 * 110.52397 * 88.23254 * 25 24 7 44 44 H 1.09001 * 110.73933 * 278.96308 * 26 25 24 45 45 H 1.08999 * 110.88923 * 155.72523 * 26 25 24 46 46 H 1.09000 * 110.47731 * 203.76216 * 27 26 25 47 47 H 1.09005 * 110.47725 * 81.13868 * 27 26 25 48 48 H 1.08997 * 110.09288 * 248.87760 * 28 24 7 49 49 H 1.08996 * 110.08984 * 10.46849 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9270 0.5642 0.3722 6 6 4.0087 1.9784 -1.3297 7 6 3.8593 3.3984 -0.7546 8 1 2.8931 3.8563 -0.9659 9 7 4.9875 4.2799 -1.0652 10 6 4.8300 5.6580 -1.0008 11 6 5.9071 6.4946 -1.2968 12 6 5.7599 7.8486 -1.2352 13 6 4.5167 8.4027 -0.8711 14 6 4.3569 9.8035 -0.8047 15 1 5.2163 10.4380 -0.6463 16 6 3.0856 10.3696 -0.9441 17 7 2.1616 9.7434 -1.6279 18 14 2.7086 12.0231 -0.1609 19 1 1.3044 12.4034 -0.4590 20 1 2.8943 11.9282 1.3093 21 1 3.6274 13.0522 -0.7105 22 6 3.4356 7.5519 -0.5675 23 6 3.5956 6.1997 -0.6393 24 6 3.9448 2.7575 0.6322 25 6 3.0238 3.3756 1.6943 26 6 3.7509 3.0889 3.0335 27 6 5.2442 3.2662 2.6598 28 6 5.3511 2.6809 1.2344 29 1 -0.3633 0.5137 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.3663 1.7861 -2.1891 35 1 5.0441 1.6834 -1.4997 36 1 5.8445 3.9009 -1.3159 37 1 6.8596 6.0685 -1.5754 38 1 6.5941 8.4950 -1.4649 39 1 2.3803 8.9275 -2.1047 40 1 2.4812 7.9697 -0.2833 41 1 2.7665 5.5464 -0.4112 42 1 2.9242 4.4493 1.5356 43 1 2.0462 2.8937 1.6795 44 1 3.5553 2.0703 3.3686 45 1 3.4561 3.8082 3.7975 46 1 5.8786 2.7093 3.3494 47 1 5.5145 4.3223 2.6598 48 1 5.6832 1.6437 1.2794 49 1 6.0464 3.2717 0.6381 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085679615.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:59 Heat of formation + Delta-G solvation = -16.830645 kcal Electronic energy + Delta-G solvation = -27046.403651 eV Core-core repulsion = 23551.898672 eV Total energy + Delta-G solvation = -3494.504979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.68512 -37.91130 -37.12568 -35.22000 -33.99694 -32.23157 -30.83620 -29.60882 -28.56104 -28.07416 -26.74967 -24.77439 -23.50522 -23.06400 -21.81177 -20.88111 -20.57142 -20.14170 -18.16561 -17.73762 -16.59667 -16.26046 -15.98858 -15.80871 -15.24473 -14.73624 -14.30082 -13.92254 -13.81873 -13.36361 -13.25682 -13.17487 -12.95015 -12.69784 -12.41878 -12.24507 -12.12261 -11.93061 -11.72143 -11.46129 -11.38621 -11.20200 -11.00885 -10.96423 -10.85612 -10.73927 -10.66073 -10.44638 -10.33182 -10.24604 -9.92372 -9.54546 -9.40865 -9.34254 -8.98044 -8.50879 -7.65220 -7.00685 -6.48816 -4.04838 2.95851 2.98080 3.25847 3.40318 3.43111 3.46695 4.17198 4.30651 4.53740 4.57624 4.72679 4.80816 4.85691 4.92556 4.99232 5.09649 5.15946 5.20414 5.33319 5.36685 5.56834 5.62720 5.69376 5.71052 5.72054 5.75329 5.82889 5.93040 5.93474 6.03142 6.07822 6.17226 6.18620 6.27457 6.30461 6.38870 6.46948 6.55468 6.60209 6.81551 6.88983 7.14616 7.20660 7.45069 7.52881 7.68176 7.94409 7.99744 8.27100 8.40696 8.52816 8.72517 9.00151 9.13161 10.27193 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015627 B = 0.003403 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.391783 B = 8225.009030 C = 8632.024097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.077 3.923 5 H 0.070 0.930 6 C -0.169 4.169 7 C 0.166 3.834 8 H 0.101 0.899 9 N -0.743 5.743 10 C 0.082 3.918 11 C -0.145 4.145 12 C -0.194 4.194 13 C 0.068 3.932 14 C -0.535 4.535 15 H 0.068 0.932 16 C 0.040 3.960 17 N -0.811 5.811 18 Si 1.061 2.939 19 H -0.276 1.276 20 H -0.277 1.277 21 H -0.279 1.279 22 C -0.182 4.182 23 C -0.141 4.141 24 C -0.096 4.096 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.095 4.095 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.383 0.617 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.296 0.704 40 H 0.104 0.896 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.061 0.939 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.626 -18.450 4.716 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.018 3.982 5 H 0.088 0.912 6 C -0.208 4.208 7 C 0.058 3.942 8 H 0.119 0.881 9 N -0.376 5.376 10 C -0.014 4.014 11 C -0.167 4.167 12 C -0.214 4.214 13 C 0.065 3.935 14 C -0.565 4.565 15 H 0.087 0.913 16 C -0.180 4.180 17 N -0.435 5.435 18 Si 0.886 3.114 19 H -0.201 1.201 20 H -0.203 1.203 21 H -0.204 1.204 22 C -0.202 4.202 23 C -0.163 4.163 24 C -0.098 4.098 25 C -0.145 4.145 26 C -0.160 4.160 27 C -0.159 4.159 28 C -0.132 4.132 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.105 0.895 36 H 0.216 0.784 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.109 0.891 40 H 0.122 0.878 41 H 0.109 0.891 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.932 -17.198 4.957 17.922 hybrid contribution 1.781 -1.615 -0.420 2.441 sum 0.849 -18.813 4.536 19.371 Atomic orbital electron populations 1.21742 0.93796 1.02025 1.03334 1.22486 0.95516 0.84159 0.99741 1.87905 1.19786 1.25767 1.94430 1.22936 0.81296 0.97379 0.96567 0.91195 1.23901 1.01214 0.97771 0.97919 1.21900 0.92057 0.88018 0.92274 0.88124 1.43825 1.11468 1.02477 1.79860 1.17235 0.94434 0.82281 1.07498 1.19855 0.95884 0.93735 1.07255 1.20486 0.98429 0.93213 1.09251 1.17547 0.91298 0.93469 0.91213 1.20298 0.96336 0.92293 1.47531 0.91335 1.26824 0.92330 1.04850 0.94024 1.70484 1.36874 1.17521 1.18641 0.83705 0.76856 0.73854 0.77017 1.20115 1.20252 1.20441 1.20766 0.99951 0.92231 1.07270 1.20042 0.94752 0.95144 1.06352 1.22853 0.95673 0.94440 0.96875 1.22156 0.98291 1.01226 0.92862 1.22490 0.95373 1.00490 0.97629 1.22355 0.96414 1.01275 0.95819 1.21756 0.95338 1.00007 0.96144 0.91744 0.91322 0.91791 0.93611 0.93612 0.90806 0.89533 0.78372 0.89612 0.89135 0.89061 0.87755 0.89051 0.90898 0.90913 0.92395 0.92012 0.92428 0.91338 0.92717 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.54 6.51 37.16 0.24 0.78 16 3 O -0.36 -4.50 8.87 -35.23 -0.31 -4.81 16 4 C 0.08 0.91 3.84 -26.14 -0.10 0.81 16 5 H 0.07 0.72 7.62 -51.93 -0.40 0.33 16 6 C -0.17 -2.06 7.50 -25.77 -0.19 -2.25 16 7 C 0.17 2.50 3.38 -67.45 -0.23 2.27 16 8 H 0.10 1.77 6.30 -51.93 -0.33 1.44 16 9 N -0.74 -12.47 4.20 -51.57 -0.22 -12.69 16 10 C 0.08 1.74 6.67 -83.69 -0.56 1.19 16 11 C -0.15 -3.23 9.82 -39.77 -0.39 -3.62 16 12 C -0.19 -4.84 9.74 -39.26 -0.38 -5.22 16 13 C 0.07 1.85 5.32 -106.79 -0.57 1.28 16 14 C -0.54 -14.81 8.96 -37.87 -0.34 -15.14 16 15 H 0.07 1.86 7.97 -52.49 -0.42 1.44 16 16 C 0.04 1.05 4.91 -17.34 -0.09 0.97 16 17 N -0.81 -22.43 12.30 55.54 0.68 -21.75 16 18 Si 1.06 22.62 30.01 -169.99 -5.10 17.52 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 21 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 22 C -0.18 -4.76 7.92 -39.26 -0.31 -5.07 16 23 C -0.14 -3.27 9.11 -39.77 -0.36 -3.63 16 24 C -0.10 -1.28 1.08 -154.01 -0.17 -1.44 16 25 C -0.11 -1.55 6.12 -25.35 -0.16 -1.71 16 26 C -0.12 -1.54 6.91 -24.61 -0.17 -1.71 16 27 C -0.12 -1.54 6.84 -24.93 -0.17 -1.71 16 28 C -0.09 -1.19 6.06 -25.87 -0.16 -1.35 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.38 5.74 8.12 -40.82 -0.33 5.40 16 37 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.30 8.42 6.73 -40.82 -0.27 8.14 16 40 H 0.10 2.85 6.44 -52.49 -0.34 2.51 16 41 H 0.09 1.98 5.51 -52.49 -0.29 1.69 16 42 H 0.07 1.24 7.45 -51.93 -0.39 0.85 16 43 H 0.07 1.04 6.82 -51.93 -0.35 0.69 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.05 0.59 7.74 -51.93 -0.40 0.19 16 49 H 0.08 1.06 6.23 -51.93 -0.32 0.74 16 LS Contribution 380.20 15.07 5.73 5.73 Total: -1.00 -28.35 380.20 -11.06 -39.41 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -8.13 Total: 13.03 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -3.71 Total: -36.45 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.47 Total: -34.43 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.31 Total: -4.81 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.10 Total: 17.52 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.35 -11.06 -39.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085679615.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.576 kcal (2) G-P(sol) polarization free energy of solvation -28.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds