Wall clock time and date at job start Tue Mar 31 2020 11:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42907 * 109.46911 * 2 1 4 4 C 1.42901 * 114.00018 * 179.97438 * 3 2 1 5 5 H 1.09007 * 112.87826 * 18.69179 * 4 3 2 6 6 C 1.54209 * 113.73463 * 247.29629 * 4 3 2 7 7 C 1.53917 * 87.12056 * 270.36062 * 6 4 3 8 8 H 1.08998 * 113.64853 * 89.67154 * 7 6 4 9 9 N 1.46496 * 113.65298 * 220.60603 * 7 6 4 10 10 C 1.38856 * 120.00154 * 252.56672 * 9 7 6 11 11 C 1.39573 * 119.83949 * 359.72656 * 10 9 7 12 12 C 1.36341 * 120.16058 * 179.71500 * 11 10 9 13 13 C 1.40891 * 119.83482 * 0.55818 * 12 11 10 14 14 C 1.41137 * 120.15449 * 179.69715 * 13 12 11 15 15 H 1.08002 * 119.99518 * 208.36977 * 14 13 12 16 16 C 1.39863 * 120.00057 * 28.36840 * 14 13 12 17 17 N 1.30905 * 119.99816 * 13.05924 * 16 14 13 18 18 Si 1.86796 * 120.00035 * 193.05482 * 16 14 13 19 19 H 1.48501 * 109.46781 * 60.00222 * 18 16 14 20 20 H 1.48496 * 109.47311 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47516 * 300.00369 * 18 16 14 22 22 C 1.40886 * 119.68819 * 359.71670 * 13 12 11 23 23 C 1.36342 * 119.83596 * 0.02562 * 22 13 12 24 24 C 1.53021 * 113.65250 * 149.99940 * 4 3 2 25 25 C 1.53567 * 115.10813 * 206.43589 * 24 4 3 26 26 C 1.55062 * 103.98279 * 106.83186 * 25 24 4 27 27 C 1.54955 * 102.86008 * 37.29821 * 26 25 24 28 28 C 1.53172 * 115.34171 * 332.39733 * 24 4 3 29 29 H 1.08995 * 109.47403 * 299.99766 * 1 2 3 30 30 H 1.09005 * 109.46933 * 60.00542 * 1 2 3 31 31 H 1.09003 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47809 * 240.00088 * 2 1 3 33 33 H 1.09000 * 109.47543 * 119.99795 * 2 1 3 34 34 H 1.09001 * 113.59030 * 155.82501 * 6 4 3 35 35 H 1.08998 * 113.67969 * 24.91049 * 6 4 3 36 36 H 0.97008 * 120.00246 * 72.57124 * 9 7 6 37 37 H 1.08000 * 119.92099 * 359.97438 * 11 10 9 38 38 H 1.07992 * 120.08471 * 180.27297 * 12 11 10 39 39 H 0.97001 * 119.99820 * 179.97438 * 17 16 14 40 40 H 1.07999 * 120.08249 * 180.02562 * 22 13 12 41 41 H 1.08007 * 119.91600 * 179.97438 * 23 22 13 42 42 H 1.09001 * 110.52686 * 225.45303 * 25 24 4 43 43 H 1.08991 * 110.52583 * 348.20815 * 25 24 4 44 44 H 1.09002 * 110.73756 * 278.95854 * 26 25 24 45 45 H 1.08998 * 110.73991 * 155.64206 * 26 25 24 46 46 H 1.09002 * 110.47677 * 203.76291 * 27 26 25 47 47 H 1.08993 * 110.47857 * 81.13977 * 27 26 25 48 48 H 1.09002 * 110.09587 * 349.16533 * 28 24 4 49 49 H 1.09001 * 110.09498 * 110.76280 * 28 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.4308 1.4602 0.0006 5 1 3.9285 0.5453 -0.3209 6 6 4.0060 2.0526 1.3030 7 6 3.8564 3.4373 0.6477 8 1 2.8887 3.9048 0.8296 9 7 4.9822 4.3369 0.9112 10 6 4.8262 5.4081 1.7808 11 6 3.5937 5.6279 2.3978 12 6 3.4349 6.6743 3.2574 13 6 4.5155 7.5415 3.5131 14 6 4.3567 8.6305 4.3967 15 1 4.9537 9.5214 4.2684 16 6 3.4265 8.5560 5.4384 17 7 2.8903 7.4048 5.7560 18 14 2.9492 10.0992 6.3766 19 1 2.3581 11.0863 5.4377 20 1 1.9544 9.7541 7.4237 21 1 4.1560 10.6839 7.0145 22 6 5.7550 7.3168 2.8822 23 6 5.9008 6.2633 2.0291 24 6 3.9472 2.7187 -0.7002 25 6 5.3628 2.6048 -1.2844 26 6 5.1308 2.5206 -2.8153 27 6 3.9423 3.4897 -3.0378 28 6 3.0402 3.2742 -1.8025 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 5.0414 1.7687 1.4914 35 1 3.3624 1.9089 2.1709 36 1 5.8367 4.1843 0.4780 37 1 2.7650 4.9652 2.1971 38 1 2.4820 6.8407 3.7374 39 1 2.2454 7.3530 6.4787 40 1 6.5876 7.9773 3.0740 41 1 6.8503 6.0900 1.5444 42 1 5.9513 3.4878 -1.0351 43 1 5.8543 1.7020 -0.9221 44 1 4.8618 1.5061 -3.1096 45 1 6.0125 2.8602 -3.3586 46 1 3.4061 3.2321 -3.9512 47 1 4.2934 4.5207 -3.0784 48 1 2.2518 2.5583 -2.0349 49 1 2.6048 4.2223 -1.4869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085679617.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:05 Heat of formation + Delta-G solvation = -9.551935 kcal Electronic energy + Delta-G solvation = -26648.856701 eV Core-core repulsion = 23154.667351 eV Total energy + Delta-G solvation = -3494.189350 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.71129 -37.75647 -37.16257 -35.16290 -33.77143 -32.22643 -30.81396 -29.44525 -28.79696 -28.32483 -26.82628 -24.88020 -23.36505 -23.03804 -21.83554 -20.98527 -20.61089 -19.92772 -18.20757 -17.15127 -16.80873 -16.26804 -15.84994 -15.76246 -15.36500 -14.92865 -14.37463 -13.78320 -13.66816 -13.42958 -13.26059 -13.23369 -12.86513 -12.55608 -12.50809 -12.20633 -11.96431 -11.91081 -11.70200 -11.58199 -11.39558 -11.11840 -11.09738 -11.03304 -10.97950 -10.92587 -10.69377 -10.56168 -10.49181 -10.24952 -9.89636 -9.62700 -9.35046 -9.21225 -9.14149 -8.44863 -7.43876 -6.53491 -6.29719 -3.99880 2.97905 3.15230 3.18086 3.21387 3.39257 3.44658 4.10902 4.33314 4.48496 4.50308 4.69489 4.80245 4.83200 4.96097 4.96467 5.11820 5.19772 5.22251 5.26956 5.35621 5.46850 5.56130 5.60350 5.66779 5.74147 5.74590 5.79770 5.87313 5.88544 5.95583 6.05693 6.15117 6.19287 6.22809 6.31389 6.36891 6.37777 6.40463 6.52030 6.98853 7.01100 7.23799 7.25944 7.42094 7.62190 7.75339 7.90125 8.20996 8.35308 8.56045 8.76052 8.86276 9.12355 9.20864 10.47149 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.015916 B = 0.003194 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.800838 B = 8764.116706 C = 9879.824205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.360 6.360 4 C 0.077 3.923 5 H 0.070 0.930 6 C -0.178 4.178 7 C 0.167 3.833 8 H 0.105 0.895 9 N -0.746 5.746 10 C 0.098 3.902 11 C -0.166 4.166 12 C -0.116 4.116 13 C 0.073 3.927 14 C -0.469 4.469 15 H 0.070 0.930 16 C 0.073 3.927 17 N -0.815 5.815 18 Si 0.904 3.096 19 H -0.267 1.267 20 H -0.281 1.281 21 H -0.269 1.269 22 C -0.184 4.184 23 C -0.163 4.163 24 C -0.090 4.090 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.104 4.104 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.383 0.617 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.275 0.725 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.921 -14.550 -13.671 19.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.018 3.982 5 H 0.088 0.912 6 C -0.218 4.218 7 C 0.059 3.941 8 H 0.122 0.878 9 N -0.381 5.381 10 C 0.001 3.999 11 C -0.188 4.188 12 C -0.136 4.136 13 C 0.071 3.929 14 C -0.501 4.501 15 H 0.089 0.911 16 C -0.141 4.141 17 N -0.443 5.443 18 Si 0.730 3.270 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.194 1.194 22 C -0.204 4.204 23 C -0.185 4.185 24 C -0.092 4.092 25 C -0.139 4.139 26 C -0.159 4.159 27 C -0.163 4.163 28 C -0.141 4.141 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.219 0.781 37 H 0.107 0.893 38 H 0.136 0.864 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.383 -14.510 -13.454 19.836 hybrid contribution 0.249 0.263 0.520 0.634 sum -1.134 -14.247 -12.934 19.276 Atomic orbital electron populations 1.21741 0.93811 1.02028 1.03304 1.22491 0.95504 0.84119 0.99774 1.87896 1.19760 1.25822 1.94452 1.22941 0.81332 0.96812 0.97091 0.91184 1.24189 1.01143 0.98893 0.97556 1.21927 0.92237 0.88038 0.91944 0.87770 1.44020 1.12048 1.30303 1.51710 1.17392 0.94868 0.90886 0.96760 1.20156 0.94891 1.01215 1.02530 1.20949 0.99361 0.95862 0.97461 1.17485 0.90154 0.93236 0.92059 1.19315 1.18877 1.01396 1.10494 0.91142 1.25762 0.94835 0.96590 0.96919 1.69823 1.24032 1.24645 1.25801 0.86443 0.78861 0.82566 0.79142 1.19186 1.20637 1.19375 1.20575 0.96887 0.99394 1.03534 1.19796 0.96012 0.98519 1.04198 1.22657 0.95659 0.95316 0.95555 1.22059 0.94912 1.01929 0.94986 1.22504 0.98273 0.99405 0.95762 1.22409 0.96414 0.99532 0.97899 1.21888 0.97512 1.01181 0.93533 0.91649 0.91899 0.91326 0.93684 0.93485 0.89557 0.90897 0.78135 0.89252 0.86443 0.91410 0.89133 0.89745 0.90405 0.91668 0.91895 0.91747 0.92166 0.91658 0.91159 0.91439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.15 0.38 -0.91 16 2 C 0.06 0.56 6.50 37.15 0.24 0.80 16 3 O -0.36 -4.56 9.10 -35.23 -0.32 -4.88 16 4 C 0.08 0.92 3.76 -26.09 -0.10 0.83 16 5 H 0.07 0.73 7.76 -51.93 -0.40 0.32 16 6 C -0.18 -2.48 7.57 -25.62 -0.19 -2.68 16 7 C 0.17 2.59 3.40 -67.44 -0.23 2.36 16 8 H 0.10 1.86 6.06 -51.93 -0.31 1.54 16 9 N -0.75 -13.00 5.36 -51.56 -0.28 -13.27 16 10 C 0.10 2.15 6.67 -83.69 -0.56 1.59 16 11 C -0.17 -3.97 9.19 -39.77 -0.37 -4.34 16 12 C -0.12 -3.11 8.60 -39.26 -0.34 -3.45 16 13 C 0.07 2.02 5.55 -106.79 -0.59 1.43 16 14 C -0.47 -13.00 9.04 -37.87 -0.34 -13.34 16 15 H 0.07 1.88 7.88 -52.49 -0.41 1.47 16 16 C 0.07 1.93 5.21 -17.34 -0.09 1.84 16 17 N -0.81 -22.14 10.93 55.54 0.61 -21.54 16 18 Si 0.90 19.70 29.58 -169.99 -5.03 14.67 16 19 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 22 C -0.18 -4.62 9.74 -39.26 -0.38 -5.01 16 23 C -0.16 -3.70 9.82 -39.77 -0.39 -4.09 16 24 C -0.09 -1.12 1.08 -154.11 -0.17 -1.29 16 25 C -0.10 -1.09 5.69 -25.35 -0.14 -1.23 16 26 C -0.12 -1.16 6.91 -24.61 -0.17 -1.33 16 27 C -0.12 -1.32 6.84 -24.93 -0.17 -1.49 16 28 C -0.10 -1.27 6.06 -25.87 -0.16 -1.43 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.38 5.97 6.23 -40.82 -0.25 5.71 16 37 H 0.09 1.99 6.01 -52.49 -0.32 1.68 16 38 H 0.12 3.27 6.26 -52.49 -0.33 2.94 16 39 H 0.28 6.89 8.30 -40.82 -0.34 6.56 16 40 H 0.09 2.16 8.06 -52.49 -0.42 1.73 16 41 H 0.08 1.69 8.06 -52.48 -0.42 1.26 16 42 H 0.08 0.90 5.87 -51.93 -0.30 0.59 16 43 H 0.06 0.63 7.88 -51.93 -0.41 0.22 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 0.85 7.19 -51.93 -0.37 0.48 16 49 H 0.07 0.94 7.90 -51.93 -0.41 0.53 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -28.66 381.19 -11.20 -39.86 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -8.16 Total: 11.15 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: -3.76 Total: -31.74 kcal Atomic # 7 Polarization: -35.14 SS G_CDS: 0.33 Total: -34.81 kcal Atomic # 8 Polarization: -4.56 SS G_CDS: -0.32 Total: -4.88 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.03 Total: 14.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.66 -11.20 -39.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085679617.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.307 kcal (2) G-P(sol) polarization free energy of solvation -28.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds