Wall clock time and date at job start Tue Mar 31 2020 11:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46860 * 2 1 4 4 C 1.42899 * 113.99723 * 180.02562 * 3 2 1 5 5 H 1.09003 * 112.88114 * 338.18830 * 4 3 2 6 6 C 1.53915 * 113.65182 * 109.50246 * 4 3 2 7 7 C 1.53922 * 87.22337 * 89.62983 * 6 4 3 8 8 H 1.08994 * 113.65587 * 139.44436 * 7 6 4 9 9 N 1.46500 * 113.64597 * 270.37621 * 7 6 4 10 10 C 1.38864 * 119.99917 * 255.49096 * 9 7 6 11 11 C 1.39563 * 119.84162 * 179.97438 * 10 9 7 12 12 C 1.36342 * 120.15972 * 179.97438 * 11 10 9 13 13 C 1.40889 * 119.83606 * 0.02562 * 12 11 10 14 14 C 1.41138 * 120.15406 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00239 * 24.75295 * 14 13 12 16 16 C 1.39868 * 119.99813 * 205.03356 * 14 13 12 17 17 N 1.30898 * 120.00027 * 17.70522 * 16 14 13 18 18 Si 1.86799 * 119.99888 * 197.70677 * 16 14 13 19 19 H 1.48497 * 109.47131 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46889 * 119.99876 * 18 16 14 21 21 H 1.48498 * 109.46921 * 239.99938 * 18 16 14 22 22 C 1.40888 * 119.68784 * 0.27961 * 13 12 11 23 23 C 1.36336 * 119.83419 * 359.43372 * 22 13 12 24 24 C 1.53019 * 86.85144 * 24.86252 * 7 6 4 25 25 C 1.53567 * 115.13600 * 218.15673 * 24 7 6 26 26 C 1.55061 * 103.98671 * 206.85648 * 25 24 7 27 27 C 1.54951 * 102.85464 * 37.30862 * 26 25 24 28 28 C 1.53174 * 115.37183 * 92.15327 * 24 7 6 29 29 H 1.09004 * 109.47312 * 299.99680 * 1 2 3 30 30 H 1.09002 * 109.47484 * 60.00337 * 1 2 3 31 31 H 1.09003 * 109.47072 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47081 * 239.99874 * 2 1 3 33 33 H 1.09008 * 109.47069 * 119.99770 * 2 1 3 34 34 H 1.08991 * 113.59375 * 335.04219 * 6 4 3 35 35 H 1.09008 * 113.66186 * 204.21760 * 6 4 3 36 36 H 0.96997 * 120.00612 * 75.49427 * 9 7 6 37 37 H 1.07999 * 119.92332 * 359.96204 * 11 10 9 38 38 H 1.07999 * 120.07948 * 179.97438 * 12 11 10 39 39 H 0.96999 * 120.00374 * 180.02562 * 17 16 14 40 40 H 1.07998 * 120.07752 * 179.70481 * 22 13 12 41 41 H 1.08004 * 119.92143 * 180.28120 * 23 22 13 42 42 H 1.09001 * 110.53122 * 325.48615 * 25 24 7 43 43 H 1.09001 * 110.52396 * 88.22861 * 25 24 7 44 44 H 1.09002 * 110.73507 * 278.96787 * 26 25 24 45 45 H 1.08993 * 110.73565 * 155.65238 * 26 25 24 46 46 H 1.09001 * 110.47614 * 203.76628 * 27 26 25 47 47 H 1.08998 * 110.47965 * 81.13984 * 27 26 25 48 48 H 1.09006 * 110.08864 * 248.87583 * 28 24 7 49 49 H 1.08994 * 110.09619 * 10.46414 * 28 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.9270 0.5641 0.3722 6 6 4.0086 1.9783 -1.3297 7 6 3.8572 3.3984 -0.7556 8 1 4.6951 4.0556 -0.9879 9 7 2.5570 4.0112 -1.0388 10 6 2.4505 4.9948 -2.0132 11 6 1.2102 5.5759 -2.2807 12 6 1.0983 6.5426 -3.2356 13 6 2.2386 6.9541 -3.9535 14 6 2.1306 7.9545 -4.9431 15 1 1.3273 8.6749 -4.8973 16 6 3.0605 8.0094 -5.9865 17 7 3.8060 6.9674 -6.2542 18 14 3.2385 9.5699 -6.9978 19 1 2.2883 10.5953 -6.4970 20 1 4.6272 10.0819 -6.8775 21 1 2.9419 9.2730 -8.4222 22 6 3.4863 6.3583 -3.6825 23 6 3.5843 5.3970 -2.7208 24 6 3.9442 2.7561 0.6306 25 6 3.0234 3.3723 1.6940 26 6 3.7518 3.0850 3.0324 27 6 5.2447 3.2641 2.6578 28 6 5.3510 2.6803 1.2317 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8901 34 1 3.3671 1.7846 -2.1893 35 1 5.0445 1.6850 -1.5003 36 1 1.7705 3.7299 -0.5456 37 1 0.3368 5.2591 -1.7300 38 1 0.1377 6.9912 -3.4419 39 1 4.4512 7.0055 -6.9775 40 1 4.3636 6.6656 -4.2324 41 1 4.5409 4.9426 -2.5087 42 1 2.9227 4.4462 1.5365 43 1 2.0462 2.8897 1.6793 44 1 3.5573 2.0658 3.3665 45 1 3.4561 3.8054 3.7950 46 1 5.8800 2.7069 3.3463 47 1 5.5140 4.3202 2.6586 48 1 5.6841 1.6432 1.2754 49 1 6.0454 3.2722 0.6356 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085679619.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:49:09 Heat of formation + Delta-G solvation = -11.882951 kcal Electronic energy + Delta-G solvation = -26874.992702 eV Core-core repulsion = 23380.702272 eV Total energy + Delta-G solvation = -3494.290430 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 315.194 amu Computer time = 3.14 seconds Orbital eigenvalues (eV) -40.72140 -37.65556 -37.11700 -35.20662 -33.71689 -32.05908 -30.86575 -29.39091 -28.84317 -28.10438 -26.79670 -24.83768 -23.67395 -22.90169 -21.55814 -21.05466 -20.60459 -19.91604 -18.08976 -17.14266 -16.70582 -16.16718 -15.98814 -15.55664 -15.32378 -14.87399 -14.48153 -13.78044 -13.71152 -13.49940 -13.35264 -13.09071 -12.71405 -12.56232 -12.52064 -12.15351 -11.94879 -11.83957 -11.70652 -11.44945 -11.36702 -11.17482 -11.10878 -11.01315 -10.96269 -10.82588 -10.64631 -10.59979 -10.47456 -10.20386 -9.83114 -9.61304 -9.29642 -9.17590 -9.13187 -8.40382 -7.40942 -6.57410 -6.27344 -3.95749 2.95582 3.17423 3.19476 3.24549 3.41069 3.45347 4.10487 4.26284 4.53161 4.58657 4.77176 4.82420 4.85723 5.00851 5.01709 5.11755 5.21322 5.25947 5.27386 5.44872 5.47480 5.58827 5.64267 5.66974 5.80318 5.81952 5.82735 5.87633 5.91512 6.01473 6.03893 6.08633 6.20904 6.31957 6.33997 6.39076 6.40542 6.41444 6.50343 7.01299 7.06565 7.27044 7.30688 7.43623 7.66942 7.77967 7.94766 8.22649 8.39282 8.61412 8.82582 8.94770 9.13172 9.23982 10.43943 Molecular weight = 315.19amu Principal moments of inertia in cm(-1) A = 0.017350 B = 0.003201 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.481255 B = 8745.161974 C = 9416.450090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.358 6.358 4 C 0.081 3.919 5 H 0.065 0.935 6 C -0.187 4.187 7 C 0.168 3.832 8 H 0.084 0.916 9 N -0.731 5.731 10 C 0.100 3.900 11 C -0.160 4.160 12 C -0.185 4.185 13 C 0.072 3.928 14 C -0.467 4.467 15 H 0.072 0.928 16 C 0.075 3.925 17 N -0.809 5.809 18 Si 0.901 3.099 19 H -0.263 1.263 20 H -0.275 1.275 21 H -0.278 1.278 22 C -0.123 4.123 23 C -0.167 4.167 24 C -0.093 4.093 25 C -0.105 4.105 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.096 4.096 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.391 0.609 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.274 0.726 40 H 0.117 0.883 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.922 -12.849 14.737 19.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.277 6.277 4 C 0.022 3.978 5 H 0.082 0.918 6 C -0.227 4.227 7 C 0.059 3.941 8 H 0.102 0.898 9 N -0.364 5.364 10 C 0.003 3.997 11 C -0.182 4.182 12 C -0.206 4.206 13 C 0.069 3.931 14 C -0.499 4.499 15 H 0.090 0.910 16 C -0.140 4.140 17 N -0.437 5.437 18 Si 0.726 3.274 19 H -0.187 1.187 20 H -0.200 1.200 21 H -0.204 1.204 22 C -0.143 4.143 23 C -0.188 4.188 24 C -0.094 4.094 25 C -0.143 4.143 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.134 4.134 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.225 0.775 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.135 0.865 41 H 0.106 0.894 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.085 0.915 48 H 0.083 0.917 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.127 -12.761 14.522 19.448 hybrid contribution 0.035 0.125 -0.548 0.563 sum 2.162 -12.636 13.974 18.963 Atomic orbital electron populations 1.21737 0.93831 1.01967 1.03315 1.22452 0.95466 0.84174 0.99585 1.87858 1.19738 1.25673 1.94410 1.22984 0.81459 0.96513 0.96796 0.91756 1.24183 1.00865 0.99621 0.98064 1.21317 0.88663 0.92143 0.92004 0.89844 1.43530 1.07181 1.42875 1.42791 1.17364 0.94132 0.94026 0.94177 1.19789 0.94222 1.01731 1.02505 1.20535 0.97187 1.01138 1.01691 1.17484 0.90525 0.92714 0.92358 1.19386 1.10849 1.12665 1.06982 0.91024 1.25770 0.94623 0.96479 0.97130 1.69868 1.19308 1.28040 1.26495 0.86394 0.78866 0.82842 0.79306 1.18676 1.20031 1.20354 1.20926 0.98210 0.98072 0.97049 1.20119 0.95286 1.02708 1.00725 1.22610 0.95735 0.95422 0.95646 1.22076 0.98607 1.01169 0.92447 1.22522 0.95129 1.00860 0.97657 1.22396 0.96743 1.01020 0.95909 1.21822 0.94597 1.01030 0.95947 0.91956 0.91583 0.91413 0.93620 0.93850 0.90409 0.89627 0.77460 0.89708 0.89197 0.91508 0.86499 0.89404 0.90926 0.90699 0.92096 0.91941 0.91995 0.91497 0.91707 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.16 0.38 -1.03 16 2 C 0.06 0.62 6.51 37.16 0.24 0.86 16 3 O -0.36 -4.65 7.74 -35.23 -0.27 -4.92 16 4 C 0.08 0.98 3.83 -26.24 -0.10 0.88 16 5 H 0.06 0.68 7.62 -51.93 -0.40 0.29 16 6 C -0.19 -2.62 7.55 -25.78 -0.19 -2.81 16 7 C 0.17 2.59 3.50 -67.44 -0.24 2.35 16 8 H 0.08 1.38 5.96 -51.93 -0.31 1.07 16 9 N -0.73 -13.26 4.79 -51.56 -0.25 -13.51 16 10 C 0.10 2.23 6.67 -83.69 -0.56 1.68 16 11 C -0.16 -3.72 9.82 -39.77 -0.39 -4.11 16 12 C -0.19 -4.72 9.74 -39.26 -0.38 -5.10 16 13 C 0.07 1.99 5.57 -106.79 -0.60 1.39 16 14 C -0.47 -12.98 9.03 -37.87 -0.34 -13.32 16 15 H 0.07 1.93 7.91 -52.49 -0.41 1.52 16 16 C 0.07 1.96 5.13 -17.34 -0.09 1.87 16 17 N -0.81 -21.90 10.96 55.54 0.61 -21.29 16 18 Si 0.90 19.60 29.60 -169.99 -5.03 14.57 16 19 H -0.26 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.12 -3.28 8.64 -39.26 -0.34 -3.61 16 23 C -0.17 -3.97 9.18 -39.77 -0.37 -4.34 16 24 C -0.09 -1.14 1.04 -154.11 -0.16 -1.30 16 25 C -0.11 -1.30 5.00 -25.35 -0.13 -1.42 16 26 C -0.12 -1.25 6.91 -24.61 -0.17 -1.42 16 27 C -0.12 -1.18 6.84 -24.93 -0.17 -1.35 16 28 C -0.10 -0.99 6.15 -25.87 -0.16 -1.15 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.04 0.39 8.14 -51.92 -0.42 -0.03 16 34 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 36 H 0.39 6.86 7.02 -40.82 -0.29 6.58 16 37 H 0.08 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.27 6.78 8.30 -40.82 -0.34 6.44 16 40 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 41 H 0.09 1.92 6.07 -52.48 -0.32 1.60 16 42 H 0.07 1.02 7.97 -51.93 -0.41 0.61 16 43 H 0.07 0.97 6.81 -51.93 -0.35 0.61 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.59 7.74 -51.93 -0.40 0.18 16 49 H 0.07 0.75 7.74 -51.93 -0.40 0.35 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -28.53 380.77 -11.21 -39.74 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -8.25 Total: 11.58 kcal Atomic # 6 Polarization: -28.16 SS G_CDS: -3.76 Total: -31.92 kcal Atomic # 7 Polarization: -35.15 SS G_CDS: 0.36 Total: -34.79 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: -0.27 Total: -4.92 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -28.53 -11.21 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085679619.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.860 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds